Oryza sativa japonica (Japanese rice) (RefSeq): 4349924
Help
Entry
4349924 CDS
T01015
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
3.6.4.13
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4349924
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4349924
03041 Spliceosome [BR:
osa03041
]
4349924
03009 Ribosome biogenesis [BR:
osa03009
]
4349924
03016 Transfer RNA biogenesis [BR:
osa03016
]
4349924
Enzymes [BR:
osa01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
4349924
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
4349924
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
4349924
Complex C
U4/U6.U5 tri-SnRNP related factors
4349924
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
Pre-60S particles
Helicases
4349924
Transfer RNA biogenesis [BR:
osa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
4349924
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
rRNA_proc-arch
DSHCT
DEAD
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
4349924
NCBI-ProteinID:
XP_015617002
UniProt:
Q53PH9
B9G9P0
LinkDB
All DBs
Position
11:complement(3801449..3808587)
Genome browser
AA seq
1003 aa
AA seq
DB search
MEEVENTSKRKAPESEHAAAVSGEHPPPPPPPDAAAKRRNLSRSCIHEVAVPKGYAAAKD
EAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNESVLVSAHTSAGKTAIAEYAIA
MSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQPNATCLVMTTEILRAML
YRGSEVIKEVAWVIFDEIHYMKDRERGVVWEESIIFLPPAIKMVFLSATMSNATEFAEWI
CNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDEDGQFREDNFLKLQDTFTKQSNQ
VDGRKGGGPKASGRIAKGGSASGNSDIYRIVKMIMERKFQPVIIFSFSRRECEHHAMSMS
KLDFNTDEEKDNIEQVFSSAILCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKELV
ELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDTNRYIASGEYIQMSGRAGRR
GKDIRGICVIMIDEKMEMSVIKDMVLGKPAPLVSTFRLSYYTILNLMSRVEGQFTAEHVI
RNSFHQFQYEKALPEVVQKITSLENEATLLDSSGETDLAEYHKLGLDISELEKKIMSEMI
RPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPQSGTLPPALSASRGNNYIVDTLL
HCSSSSNENGSRSKPLPPRPGEKGEMHVVPVPLPLLSGLSSVRINIPPDLRPPEARQNIL
FAVQELGKRYPQGLPKLDPIKDMGLQEPELVELVHKLDDLEQKLCSHPLHKSDQSEQQLS
WYQRKAELNHEIQMLKSKMRDSQLQKFRDELRNRSRVLKMLGHIDADGVLQLKGRAACLI
DTGDELLITELMFNGTFNDLDHHQVASLASCFIPCEKSSEQIRLRSELSTPMMQLQEAAR
KIAEVQKECKLEVNVEEYVESTCRPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRLARR
LDEFLNQLKAAAQAVGEVNLENKFGAASDSLRRGIMFANSLYL
NT seq
3012 nt
NT seq
+upstream
nt +downstream
nt
atggaggaggtggagaacacgagcaagcggaaggcgccggagagcgagcacgccgccgcc
gtctcgggggagcatccgccgcctccgccgccgcctgacgcggcggcgaagcggcggaac
ctgtcgcggtcgtgcatccacgaggtggcggtgcccaagggctacgccgcggccaaggac
gaggcggtgcacgggacgctctcgagcccggccttccatggcgagatggccaaggcctac
ccgttccagctcgaccccttccagagcgtctccatcgcctgcctcgagcgcaacgagtcg
gtgctcgtctccgcccacacctcggcggggaagaccgccattgccgagtacgccatcgcc
atgtcgttccgggacaagcagagggtcatatacacctcccctctcaaggccctgagcaac
cagaagtacagggagctcagccaggagttctccgatgtcggattgatgaccggcgatgtc
acgctgcagccgaacgcgacttgcctcgtcatgaccacggagatcctcagggcaatgctc
tacagggggtccgaggtgatcaaggaggttgcctgggttatctttgatgagatccactac
atgaaggatcgcgagcgcggggtcgtgtgggaggagagtataatcttcctgccacctgcc
atcaagatggtgttcctctctgccaccatgtcgaacgcgaccgagtttgccgagtggata
tgcaatctgcacaagcaaccttgtcatgtggtgtatactgacttcaggccgacaccgtta
cagcactatgtgttcccgattggcggctccggtctctaccttgtagtagatgaggatggc
caattcagagaggataattttttgaagctgcaagacacgttcacaaagcaaagtaatcaa
gtggatggaaggaagggtggtggacctaaagccagtggtcgaatagcaaagggcggaagt
gcctctggaaattcggacatatacagaatcgtcaagatgattatggaacggaagtttcaa
ccggtcataattttcagctttagcagaagagaatgtgaacaccatgccatgtcaatgtca
aaacttgacttcaacactgatgaagaaaaagataacatcgaacaggttttcagcagtgct
attctatgtttaagtgaggaagatagaggtttgcctgctatagagttgatgttgcctctt
cttaaacgaggtattgcagttcaccattctggattgcttccattaattaaagagctggtg
gagttgctcttccaagaaggccttgtaaaagctctctttgctactgaaacatttgccatg
ggactgaatatgcctgcaaaaaccgttgtgttcacgtctgtcaaaaaatgggatggtgat
actaaccgctatattgcttctggagaatatatacagatgagtggaagagctggtcggcgt
ggcaaggatatacgtggaatttgtgttataatgatagatgaaaaaatggagatgagtgtt
ataaaggacatggtgttaggtaaaccagcacctcttgtcagtactttccggctgagctat
tacacaattctcaatttaatgagtcgcgtggagggccagtttactgctgagcatgtgatc
aggaattcattccatcagtttcaatatgagaaggcattgccagaagtggtgcaaaagatt
acatcattggaaaatgaagctaccttacttgattcttctggagagactgatcttgcagaa
tatcataaattggggcttgatatatcggaacttgaaaagaaaatcatgtcggagatgatt
agaccagagagggctttgttatacttggttcctggaaggctggttaaagtgagagatggt
tcaacagactggggatggggtgtggttgtaaatgtggttaagaaacctccacaatctggt
actctccctcctgcactaagtgcatctcgtggtaataactatatagtggataccctgctt
cactgttcttctagttcgaacgagaatggatcccgttcaaagccattgccaccacgccca
ggggagaagggagaaatgcatgtggtgcctgtaccactacctttattatctggtctaagc
agtgttagaatcaacattcctcctgatctacgaccacctgaagcaagacaaaatatactt
tttgcagtgcaagagctgggaaagcggtacccccaaggtcttccaaagctagatccaatc
aaagacatgggtcttcaagaacctgaactagtggagttggttcataagcttgatgatctt
gagcagaaactgtgttctcatccacttcataagtctgatcaaagtgagcagcaactgtca
tggtatcaaagaaaagctgagctaaatcatgaaattcaaatgctaaagtcaaagatgcgg
gattcgcagctacaaaaatttagagatgagcttaggaatcggtcccgtgttctgaagatg
cttggtcacattgatgctgatggtgtgctccagctgaaaggacgtgctgcctgtttaata
gacacaggggatgagctgcttatcactgaacttatgtttaatggtacatttaacgatctt
gatcatcatcaagttgcttcccttgctagctgctttataccttgtgagaagtctagtgaa
caaatacgcctgagaagtgagctttctacaccaatgatgcagctacaggaggctgcgaga
aaaatagctgaggtacaaaaagaatgcaaattagaggtaaatgttgaagaatatgtcgaa
tcaacttgtaggccctacctgatggatgtcatatactgttggtcaaagggggccactttt
ggagaggtgatagaaatgactgacatttttgaaggaagtatcatacggctggctagaaga
ctggatgaatttctgaatcagttgaaagctgctgctcaagctgttggtgaggttaacctt
gagaacaagttcggagcggccagcgacagcttacgtcggggtatcatgttcgccaactca
ttgtatctgtga
Oryza sativa japonica (Japanese rice) (RefSeq): 9268439
Help
Entry
9268439 CDS
T01015
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
3.6.4.13
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9268439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
9268439
03041 Spliceosome [BR:
osa03041
]
9268439
03009 Ribosome biogenesis [BR:
osa03009
]
9268439
03016 Transfer RNA biogenesis [BR:
osa03016
]
9268439
Enzymes [BR:
osa01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
9268439
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
9268439
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
9268439
Complex C
U4/U6.U5 tri-SnRNP related factors
9268439
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
Pre-60S particles
Helicases
9268439
Transfer RNA biogenesis [BR:
osa03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
9268439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
rRNA_proc-arch
DSHCT
DEAD
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
9268439
NCBI-ProteinID:
XP_015620627
LinkDB
All DBs
Position
12:10458954..10466159
Genome browser
AA seq
1001 aa
AA seq
DB search
MATLKRKADSAAAELASPPPKAPRGSEALAESPSLAGGGSEPVACVHDVSYPEGYDPSAP
ATHLLNGVGGAEGAGPAKTFPFQLDPFQAEAIRCLDNGESVMVSAHTSAGKTVVALYAIA
MSLRNQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQ
YKGSEVMREVAWIIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWV
AKVHKQPCHIVYTDYRPTPLQHYVFPSGGDGLYLVVDEKSKFREDSFQKGLNALVPASEN
DKKRENGKWQKGLLTGKPSEDSDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMD
LNDDDEKANIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEIL
FQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGID
QRGICILMVDEKMEPSTAKMILKGSADSLNSAFHLSYNMLLNQIRCEDGDPEKLLRHSFY
QFQADRVLPDLEKQVKELELERNSMIIEEEENLKSYYDLLQQYKNLKKDVRDIVHSPKYV
LPFLQPGRLARVQYSTDEQSTFSIDENITWGVTINFEKVKTHSEDRRPEDSDYTVDVLTR
CSVSKDKSGKKTMKIIPLKDRGEPVVISLPLSQIDGLSSIRMHIPKDLLPVEARENTLRK
VDEVISRFAKDGIPLLDPEEDMKVQSSSFRKASRRIEALESLFEKHDVHNSPHIKQKLKV
LHAKQELSTKIKAIKRTMRSSTALAFKDELKARKRVLRRLGYITSEDVVEVKGKVACEIS
SADELTLTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFFQLQETARR
VANLQLDCKIQIDVESFVNSFRPDIMEAVYSWAKGSKFYQIMEMTQVFEGSLIRAIRRLE
EVLQQLILASKSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctcaagcgtaaggccgattccgcggccgccgagctcgcgtcccctcctccc
aaggccccgcggggctcggaagcactcgctgaatcgccttccctcgccggcgggggcagc
gagcccgtcgcctgcgtgcacgacgtctcctacccggaaggctatgacccgtccgccccc
gccacccacctgctcaacggcgtcggcggcgccgagggtgctgggcctgccaagaccttc
ccgttccagctcgaccccttccaggccgaggccatccgatgcctcgacaacggagaatcc
gtcatggtctcagctcacacatcagctggaaagacagtggttgcattgtatgcaatagca
atgtctttgcgtaatcagcaacgtgtcatctatacatctccaatcaaggctttgagtaac
caaaagtacagggaattcaaagaagagttctctgatgtcggcctcatgactggggatgtt
actattgagccaaatgcatcttgtttggtcatgaccacggaaatttggcgtagcatgcag
tataaaggatcagaagtcatgagggaagtcgcttggattatatttgatgaagtacactac
atgcgtgatagagagagaggagtggtgtgggaggaaagtatagtgatggctcctaagaac
tcacgttttgtgttcctctcagctaccgtgcctaatgccaaggagtttgctgactgggtg
gctaaggtacataagcaaccttgtcatatagtatacactgactaccggcctacacctctc
caacactatgtatttccttctggaggtgatggtttatatctggtagttgatgagaagagc
aagttcagagaggatagttttcagaaaggtttgaatgcgcttgtccctgctagtgagaat
gacaaaaagagggaaaatgggaagtggcagaaaggtctcttgacaggaaaacctagtgag
gacagcgacatattcaagatggtgaagatgataattcagcgtcaatatgacccagtgata
cttttcagctttagcaaaagggagtgtgaatttcttgctatgcagatggctaagatggac
ttgaatgatgatgatgagaaggcaaacattgaaacaattttttggagtgctatggatttg
ctttcagatgatgataagaagcttccccaggtttcaaacatgcttcccttgttgaaacgt
ggcattggtgtacatcattctggtcttttgcccattttgaaggaagtgattgagatactc
ttccaagagggccttatcaagtgcttgtttgccacagaaacattcagtattggtttgaac
atgcctgcaaagactgttgtgtttaccaatgtgcgaaaatttgacggtgatcgattcaga
tggttgtcaagtggagaatacatccagatgagtggccgtgctggtcgccgaggtattgat
cagcgtggtatctgtatattgatggtagatgagaaaatggaaccttcaactgccaaaatg
attctgaaaggaagtgctgatagtttgaacagtgcctttcatttgagctacaatatgttg
ttaaatcaaatacgctgtgaagatggtgatcctgaaaagcttcttcggcactcattttac
caatttcaagctgatcgagttctccctgatcttgagaagcaagtcaaggagctggaacta
gagagaaattccatgattattgaggaggaggagaacctaaagagttattatgatctcttg
cagcagtacaaaaatctaaagaaggatgtccgcgatattgttcattctcctaaatatgtt
ctacctttcttgcaaccaggaaggcttgctcgcgttcagtacagtactgatgagcaatcc
accttctctattgatgaaaacatcacttggggagttacaataaactttgaaaaggtgaaa
acccatagtgaagataggaggcctgaggattccgattacacagttgatgttctcacaaga
tgttctgtaagcaaggacaaaagtggaaagaagacaatgaagattattcctctgaaagac
cgtggagaaccagttgtgatttccttgccactttctcagattgatggactaagcagcatt
cggatgcacataccaaaggatcttttgcctgtagaagctcgagaaaacacattgaggaaa
gttgatgaagttatttccaggtttgctaaagatgggatccctttattggatccagaagag
gatatgaaagtacaatcaagctctttccggaaagcttccagaagaatagaagctcttgaa
agtttatttgagaagcacgatgtccacaattctccacatattaaacaaaagctaaaagtg
ttgcatgctaagcaagaattatcaaccaaaataaaggccattaaaagaacaatgcggtct
tccactgctttagccttcaaggatgagctcaaggcccgaaaacgggttcttcgtagactg
ggatatattacaagtgaggatgttgtggaagtgaagggcaaagtagcatgcgagataagt
tctgctgatgagctaacattgacagagcttatgtttagcggcactctgaaggatgctaca
gtagaacagatggtagcgctgctttcttgctttgtttggcaggaaaagcttcaggatgcc
ccaaagccaagggaggagctcgacttgctgttcttccagttgcaggagacagctagaagg
gttgctaaccttcagcttgactgcaagatccaaattgacgtggagagttttgtgaactct
ttccggcctgatataatggaagcggtgtattcatgggccaaaggatccaaattctatcaa
atcatggagatgacccaagtatttgagggcagcttgatcagggccatcagaaggcttgag
gaggtcctgcaacagctaattctggcatcgaaatccatcggtgaaacccaattggaagca
aaacttgaggaggctgtcagtaagatcaagagggatatagtgtttgcagcatctttatac
ctgtaa
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