KEGG   Oryza sativa japonica (Japanese rice): 4349954
Entry
4349954           CDS       T01015                                 
Symbol
CHB705, OsJ_33208, OsSWI3C, OsSWI3C1, SWI3C, SWI3C1
Name
(RefSeq) SWI/SNF complex subunit SWI3C homolog
  KO
K11649  SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03082  ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    4349954 (CHB705)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4349954 (CHB705)
   03036 Chromosome and associated proteins [BR:osa03036]
    4349954 (CHB705)
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    BAF/PBAF complex
     4349954 (CHB705)
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Chromatin remodeling factors
   BAF complex
    4349954 (CHB705)
   PBAF complex
    4349954 (CHB705)
   GBAF(ncBAF) complex
    4349954 (CHB705)
SSDB
Motif
Pfam: SWIRM-assoc_1 SWIRM Myb_DNA-binding Myb_DNA-bind_6 ZZ
Other DBs
NCBI-GeneID: 4349954
NCBI-ProteinID: NP_001410101
LinkDB
Position
11:join(4274584..4274611,4274685..4275230,4275306..4275862,4277526..4277880,4278001..4278074,4280175..4280266,4280710..4280783,4280890..4281032,4282361..4282846)
AA seq 784 aa
MPRKASSTSDSRLKWRKWKRNPTASPSPSNRSSAAAAAADHSDDSDSAAVNEDDDSAVPE
DADDETLAGAEDPVLDLREAEVLPSAEPVSAFPVATRRVVNRPHPSVLAVIAAERSACAG
EGSAAVAAAPVLENISYGQQQVLSGVLPDHASLATDTDKPSTYVCTPPNLMEGHGVTKQF
QGRLHVVPKHSDWFSPGIVHRLERQVVPQFFSGKSPGNTPEKYMLLRNKVIAKYLENPSK
RLAFAECQGLVANTAELYDLSRIVRFLDTWGIINYLASGSVHRGLRMATSLLREEPTGEL
QLLTAPLKSIDGLILFDRPKCNLQAEDISSLASNSEVVDFDAGLAELDGKIRERLSESSC
SYCLQPLTSLHYQSLKEADIALCSDCFHDARYITGHSSLDFQRIDGDNDRSENDGDSWTD
QETLLLLEGIEKYNDNWNNIAEHVGTKSKAQCIYHFIRLPVEDGLLENIEVPDASVPFRA
ETNGYPHLDCNGSTSGNLPQKIPPDNQLPFINSSNPVMSLVGFLASAMGPRVAASCASAA
LSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAATK
AKLFADQEEREIQRLTATVINHQLKRLELKLKQFAEVETLLLKECEQVERIRQRIASDRV
RIVSTRLASPGNSLPGGSTSTMSSNPMSMSPRPMGVPGSMPQSSMPAPFANNMQGHGHPQ
MAFLQQQQRQQMLSFGPRLPLSAIQTQPSPQTSNIMFNPGMPNSVTPNHHQLLRSSSGNN
SSVG
NT seq 2355 nt   +upstreamnt  +downstreamnt
atgccgcggaaggcctcgtcgacctcagattcgcgcctgaaatggcggaagtggaagcgg
aaccccaccgcgtccccgtcgccgtccaaccgctcgtcggccgccgccgccgcggcggac
cactccgacgactccgactccgccgccgttaacgaggacgacgactccgcggtccccgag
gacgccgacgacgaaaccctagccggggcggaggaccccgtgctcgacctccgcgaggcg
gaggtgctcccttcggcggagcccgtctcggcgttccccgtcgccacccgacgcgtcgtc
aaccggccgcacccgtccgtcctcgccgtcatcgcggccgagcgatccgcgtgcgcgggt
gagggttccgccgcggtggcggcggcgccggtgctggagaacatctcgtacgggcagcag
caggtgctctccggggtgctccctgaccacgcttcgctcgcgacggacactgacaagccg
tctacctatgtgtgcacgccgccgaatcttatggaggggcatggcgtgaccaagcagttc
cagggtcgcctacatgtcgtgcccaagcactcagattggttctccccagggatcgtgcac
aggctggaaaggcaggtggtgccacagttcttttcagggaagtcgccgggcaacactcca
gagaagtacatgctattgaggaataaggttattgcaaaatatttagagaacccaagcaag
aggcttgcttttgcagagtgccaggggcttgttgcgaacacagctgaattatatgatctc
agtaggattgttaggttcttagacacttggggaatcatcaattaccttgcgtctgggtcg
gtgcaccggggtctaaggatggcaacctcccttctaagggaggagccaaccggggagttg
caactattgactgcgccactgaaatcaattgatggcctaattttgtttgatcgaccgaaa
tgtaacctccaagcagaggacatttcttcattggcatcaaattcggaggttgtggatttt
gatgctggacttgcagaattggatggaaagattagggagcgattgtcagagagttcttgc
agttattgcttacagcctttgaccagcttgcactatcagtcactaaaggaggcagatatc
gctctatgctctgattgcttccatgatgcgagatatattactgggcattcaagcttagat
tttcagaggattgatggggataacgatagatcagaaaatgatggggatagttggactgat
caagaaacgttattgctgttggagggcatagagaagtacaatgacaactggaataacatt
gcagagcatgttggaacaaagtcaaaagcacaatgtatttaccattttattcgtcttcct
gttgaagatggtttgttagagaatattgaggtgccagatgcatctgtgccatttagagca
gaaaccaatggatacccacatttagattgcaatggcagtacttcaggaaatctacctcaa
aaaattccacctgataaccagcttccgttcattaattcttctaatccggtgatgtcactg
gttgggtttttggcttctgctatgggaccaagagttgcagcatcatgtgcaagtgctgct
ttatcagttttgacagtagatgatgattccagggtgaattcagaaggcatttgctctgat
tctaggggccaaggtccgcatccgaattttcgtgatcataatggtggtgtatcttcatcc
atctctccagaaaaggtgaagcatgctgccatgtgtggtttgtcggcagcagctacgaag
gctaaactttttgcagatcaagaggaacgtgaaatccaaagactaactgctactgtaata
aaccatcagttaaaaaggttggaactgaagctgaagcagtttgccgaagtcgagaccttg
cttttgaaagaatgcgagcaagtggagagaataaggcagaggattgcatctgaccgtgtc
cgaatcgtgtccacccgcttggcctcgcctggaaatagcctacctgggggtagtactagc
accatgtcatccaatccaatgagtatgagccccagaccgatgggcgtgccaggctcgatg
cctcaatccagtatgccagcaccatttgccaataacatgcaggggcatggtcacccccag
atggcattcttacaacagcagcagcggcagcagatgctgtcatttggacctcgtctgccg
ctgtcggccatccaaacccagccatccccacagacgtcaaacatcatgttcaacccaggc
atgcccaattctgtaacccctaatcatcatcaactgttgaggtcgtcttctggaaacaat
tcaagtgtaggatag

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