KEGG   Oryza sativa japonica (Japanese rice): 4349978
Entry
4349978           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein
  KO
K10728  topoisomerase (DNA) II binding protein 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4349978
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4349978
   03400 DNA repair and recombination proteins [BR:osa03400]
    4349978
DNA replication proteins [BR:osa03032]
 Eukaryotic type
  DNA Replication Initiation Factors
   Other initiation factors
    4349978
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-B complex
     4349978
SSDB
Motif
Pfam: PTCB-BRCT BRCT BRCT_2 LIG3_BRCT BRCT_3 RTT107_BRCT_5 TopBP1_BRCT0 ECT2_BRCT0
Other DBs
NCBI-GeneID: 4349978
NCBI-ProteinID: XP_015616981
LinkDB
Position
11:join(4669337..4669570,4669689..4669731,4671583..4671704,4671786..4671893,4673214..4673358,4673447..4673538,4674015..4674108,4674236..4674677,4674766..4674905,4675023..4675372,4675648..4675815,4675925..4676215,4676340..4676520,4676596..4676777,4676888..4676914,4677017..4677099,4677527..4677653,4677736..4677843)
AA seq 978 aa
MTPSHGAAAAAASSSAGAGRRAATFAGASVFLSRSLVAPEVYDAVHDALRLNGAEVFLCA
DPARTGPLDFHVISSSSHERFADLRAKGCNLLGPQCILSCAKEHRFLPKQGYTCCLAMDG
VKILCSGFEKDEKAKIEQLVTAMGGTLQNKAYTDANFVIAKDVLAAKYKWAVNTLKKPIV
SRNWLEQCWIEHRVVPHEPYRIPPFSGLNICITKLNVDERRELAKIIVQNGGQYSANLTR
RCTHLVSNEPGGDKYVVAQKWGNIHIVVPKWIDQSVARKVCLDESAYLVCQNSTNINGVK
HSLKEQHNPEISSASFQPVPTTSVDDSVSTSQYVPASFDDASKICSTDIGAPSFQETKEL
QVDSHVAEDSEAEDDDLYLSNCRISLVGFEEKESSRLVMMIRNGGGSRHVMLSERLTHII
LGAPSEEEKKEVRRLAAWGVINVVKATWLEDCNKAKKEVKVSPSYVANELLAKEFSCAVM
EKTVMRETKAAKNSGGIFHIPTVNDLHDKQLGNDLSSERKSARGKHETMNSNRTATKSAI
SSQQNGVASTSEYHPKFQVNSSAINRQSSRSSNTFKGRIFCFSNSFSHDRRAQVVDWVRE
GGGIMVDDAQSTVVDFIIESHGQNSMLRDSSHSTAVSTHWIRSCLEEGCFQDVGSHPIFS
PLCCRIPFPGFEDFRFCVSQYEEKDRLLLKNLCFILGSKFTEKATKKVTHLICKFASGPK
YEAYYSRGIPTITAEWLFECVRQDRIVPFDQFQPKPPTSQDRDAGLCTVSQYPTQAAKTI
SRFDCSESHTESQLPRSSSKYNSGNASVNEEPNDPGVSKRRRLSEFGKANDTSGNIGRTE
ELQDSTPVPDVADAIEDLLVQSSKIQDVQPPRSIFAPDDSVLNQDQENTHSFGISRHWLN
MPQKLHSTPDTKVQSGNSATTSAAPPAAATAYYPFSETQTESQVVGYEEDLTGRQKIIDR
VRSQSINVTPAAEMSSDT
NT seq 2937 nt   +upstreamnt  +downstreamnt
atgacgccgtcgcacggcgccgcggctgcggcggcgtcgtcctccgccggcgccgggcgg
agggccgcgacattcgcgggggcgagcgtgttcctgtcgcggagcctggtggcacccgag
gtgtacgacgccgtgcacgacgcgctccgcctcaacggcgccgaggtcttcctctgcgcc
gaccccgcccggacggggccgctcgacttccacgtcatctcctcctcctcccacgagagg
ttcgcggatctgagagccaaaggctgcaatttactcggaccacagtgcattctttcctgt
gcgaaggaacaccgcttcctacctaagcaaggttatacttgttgtcttgcaatggatggg
gttaagatactttgctcaggttttgaaaaagatgagaaggcaaagattgaacaattagtg
acagctatgggaggtactttacaaaacaaagcatacacggatgctaactttgtaattgca
aaggatgtattggctgccaaatacaaatgggctgtgaatactctgaagaagcctattgtc
agcaggaactggttagagcaatgttggattgaacatcgtgttgtacctcatgaaccttac
agaatccctcctttttctgggttgaatatttgcatcaccaaactgaatgtagacgaacgg
agggagttggcaaaaataatagtgcagaatggtggccagtattcagcaaatcttacacgg
cggtgcactcatttagtttcaaatgaacctggaggtgacaagtatgttgtggcccaaaaa
tggggtaatatccacatagtagttcccaaatggatcgaccaatctgttgctcgaaaagtt
tgccttgatgaaagtgcataccttgtttgtcagaattccactaatattaatggtgtaaaa
cattcccttaaggaacaacacaaccctgagatcagtagtgcaagttttcaacctgttcca
acaacatctgtagatgactcagtatcaacgtcacagtatgtgcctgcttcatttgatgac
gcttcaaagatctgcagtactgatattggcgcacctagtttccaagagacaaaagaacta
caggttgatagccatgttgctgaggactcagaggcagaagatgatgacctttatttatca
aattgtagaatttctctggtgggttttgaggagaaagagtcgtcaaggttagtcatgatg
atacgcaatggtggtggatcccggcatgttatgttaagtgagagactcacacatattatt
cttggtgcaccatcagaggaagaaaaaaaggaggtgagacgtctggctgcttggggtgta
atcaatgtggtaaaagcaacatggttagaagactgcaacaaagcaaaaaaggaggtgaaa
gtatccccaagttatgtggctaatgagttgctcgcgaaagagttttcatgtgcggttatg
gaaaaaactgttatgcgggaaacaaaagcagccaaaaactcaggtggaatttttcatatt
ccaaccgtcaatgacttgcatgataaacaacttggaaacgatctgtcatctgaaagaaaa
tcagcacggggcaaacatgaaaccatgaatagtaaccggacagcaacgaagtctgcaata
tcaagtcaacagaatggagtggctagtactagcgagtaccaccccaaatttcaagtaaac
tcttctgcaataaatcggcagagtagcagatcatcaaatactttcaaagggagaatattt
tgtttctcaaattcattttcccacgatcggagagctcaggttgttgactgggtcagagaa
ggtggaggcattatggtggatgatgcacaatcaacagttgtggatttcattatcgagagc
cacggacagaatagcatgctccgcgactcttctcattcaactgctgtttccactcattgg
atacgctcatgtttggaggagggctgcttccaagatgtgggaagccatcctattttctca
cctttgtgctgtcgcatcccgtttcctgggtttgaagattttcgtttctgtgtgtcacaa
tatgaagagaaagatagacttctgctgaagaacttgtgctttatcctcggaagtaaattt
acagagaaagcaacaaagaaagtgacccatcttatctgcaaatttgcaagtggtccaaag
tatgaggcttactatagtaggggaattccaaccataacagcagagtggctctttgagtgt
gtaagacaggatagaattgtcccttttgaccagtttcagccaaaaccacctacttctcag
gacagagatgctggtctatgcactgttagtcaatatcccacacaggccgcaaagacaatt
tccagatttgactgctctgagtcgcatactgaatctcaattaccaagaagcagttcaaaa
tacaactccggtaatgcctctgttaatgaggaaccaaatgatcctggtgttagtaaaagg
aggcgattatccgagtttggcaaagctaatgatacatctggaaacataggaagaactgag
gaactccaggatagtacccctgttcctgatgttgcagatgcaatagaggacctactggtt
caatcatccaagattcaggacgtacaacctcctaggagtatttttgcacccgatgattct
gttcttaatcaagatcaggaaaatacacactcttttggcatttcaaggcactggttgaac
atgccacagaagctacacagcacccctgacacgaaagttcaaagtgggaactcagccacc
acctctgctgcccctcctgccgcagccactgcctattatcctttcagtgaaactcagact
gagtctcaggtcgttggctatgaagaagatttgactggcaggcaaaagattatcgacaga
gttcgttctcagagcattaatgtcaccccggcagctgaaatgtcttccgatacttag

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