Oryza sativa japonica (Japanese rice): 4350197
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Entry
4350197 CDS
T01015
Symbol
TID1, tubA
Name
(RefSeq) tubulin alpha-2 chain
KO
K07374
tubulin alpha
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04145
Phagosome
osa04814
Motor proteins
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
4350197 (TID1)
09142 Cell motility
04814 Motor proteins
4350197 (TID1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4350197 (TID1)
03036 Chromosome and associated proteins [BR:
osa03036
]
4350197 (TID1)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
osa04812
]
4350197 (TID1)
04147 Exosome [BR:
osa04147
]
4350197 (TID1)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4350197 (TID1)
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Other tubulins
4350197 (TID1)
Cytoskeleton proteins [BR:
osa04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulins
4350197 (TID1)
Exosome [BR:
osa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
4350197 (TID1)
Exosomal proteins of other body fluids (saliva and urine)
4350197 (TID1)
Exosomal proteins of colorectal cancer cells
4350197 (TID1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tubulin
Tubulin_C
Tubulin_3
DUF7281
Motif
Other DBs
NCBI-GeneID:
4350197
NCBI-ProteinID:
NP_001391388
LinkDB
All DBs
Position
11:join(8393541..8393633,8394526..8394760,8394847..8395217,8395330..8395986)
Genome browser
AA seq
451 aa
AA seq
DB search
MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPGDKTVGGGDDAFNTFFSETGAGK
HVPRAVFVDLEPTVIDEVRTGDYRQLFHPEQLISGKEDAANNFARGHYTIGKEIVDLCLD
RIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTS
VVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTA
SLRFDGALNVDVNEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS
MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPP
SVVPGGDLAKVQRAVCMISNSTSVVEVFSRIDIKFDLMYSKRAFVHWYVGEGMEEGEFSE
AREDLAALEKDYEEVGSEFDDGDEGDEGDEY
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atgagggagtgcatctcgatccacatcgggcaggccggtatccaggtcgggaacgcgtgc
tgggagctctattgcctcgagcatggcatccagcctgatggacagatgcccggtgacaag
accgttgggggaggtgatgatgcttttaacaccttcttcagtgagactggtgctgggaag
catgtcccccgtgctgtcttcgtcgatcttgagcctaccgtgattgatgaggtgaggact
ggtgactaccgccagctcttccaccctgagcagctcatcagtggcaaggaggatgcagcc
aacaactttgcccgtggtcactacaccattggcaaggagattgttgatctgtgccttgac
cgcatcaggaagcttgccgacaactgcactggtctccagggcttccttgtgttcaacgct
gttggaggaggaacgggctccggtctcggttcccttctccttgagcgtctctctgtggac
tatggcaagaagtccaagctcgggttcaccgtgtacccgtcccctcaggtctccacctct
gtggttgagccatacaacagtgtcctctccacccactccctccttgagcacaccgatgtc
gctgtcctgctcgacaatgaggccatctatgacatctgccgccgctccctcgacattgag
cgcccaacctacaccaacctcaacaggcttgtgtcccaggtcatctcctcactgactgcc
tccctgaggttcgatggtgctctgaatgtggatgtcaacgagttccaaaccaacctggtg
ccctacccgaggatccacttcatgctttcctcctacgccccggtgatctcggccgagaag
gcctaccacgagcagctctccgtggcggagatcaccaacagcgccttcgagccgtcctcc
atgatggccaagtgcgacccgcgccacggcaagtacatggcgtgctgcctgatgtaccgc
ggcgacgtggtccccaaggacgtgaacgccgcggtggccaccatcaagacgaagcgcacc
atccagttcgtggactggtgccccacggggttcaagtgcggcatcaactaccagccgccc
agcgtcgtcccggggggagacctggccaaggtgcagagggccgtgtgcatgatctccaac
tccaccagcgtcgtcgaggtgttctcccgcatcgacatcaagttcgacctcatgtactcc
aagcgcgccttcgtccactggtacgtcggcgagggcatggaggagggggagttctccgag
gcccgcgaggacctcgccgcgctggagaaggactacgaggaggtcggctccgagttcgac
gatggtgacgagggtgatgagggtgacgagtactag
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