Oryza sativa japonica (Japanese rice) (RefSeq): 4350754
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Entry
4350754 CDS
T01015
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03030
DNA replication
osa03420
Nucleotide excision repair
osa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4350754
03420 Nucleotide excision repair
4350754
03430 Mismatch repair
4350754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
osa03032
]
4350754
03400 DNA repair and recombination proteins [BR:
osa03400
]
4350754
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
4350754
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
4350754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
AAA_30
AAA_22
DNA_pol3_delta
PTCB-BRCT
RuvB_N
AAA_16
AAA_5
AAA_assoc_2
Sigma54_activ_2
BRCT_2
Zeta_toxin
AAA_24
AAA_17
RNA_helicase
AAA_18
GREB1_C
RsgA_GTPase
NTPase_1
AAA_33
AAA_14
Mg_chelatase
TsaE
AAA_19
Motif
Other DBs
NCBI-GeneID:
4350754
NCBI-ProteinID:
XP_015617630
UniProt:
Q2R2B4
LinkDB
All DBs
Position
11:21443057..21452911
Genome browser
AA seq
1021 aa
AA seq
DB search
MSSDIRKWFMKAQDKNGGAAKPAGTTALAKKPVLSIPEKPSAAPSMAACDQDCSARRKTS
KYFASKTEKEEDTSAGKGTGRGLPKRKLQKVSDELEDDMKPLPAKEVHKEEEDDDDDDFV
APSKRKTPVKPPPSKKLKGASTAEAHGKTGLDDDNEDKMDEDAKTPSKASGSGRGRGRGR
GRGGRGAGAAHGKTIGLDDDGEEDKMDEDAKTPSKAAGRGRGGASGGRGRGGGGRGFMNF
GERKDPPHKGEKEVPEGAPDCLTGLTFVISGTLDSLEREEATDLIKRYGGRVTGSISKKT
NYLLADEDVGGVKSNKAKELGVPFLTEDGLFDMIRKSKPAKATVAKHQSDKNSEKQQKSP
MKSSPVKVERRDGNQITTGKNISPKSNKGSASIDNQKVNIVDRGSLQWTEKYRPKVPNDI
VGNQSMVKQLHDWLRSWEDQFLHSGQKGKGKKQADSGAKKAVLLSGPPGIGKTTTAKVVS
QMLGLQAIEVNASDSRGKADSKIEKGVGGSTSNSIKELISNATLNYSNNRLKRPKAVLVM
DEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLLLNFRKPTKQQM
GKRLMEIAKKEGLQAQENAMEELAERVHGDIRMALNHLQYMSLSQSVVKYDDIRQRLNSS
TKDEDISPFTAVDKLFGFNGGRLRMDERIDLSMSDPDLVPLIIQENYINYRPITVGKDDS
GVKRMNFLARAAESIADADIVNVQIRRYRQWQLSQAACLSSSIVPAALMHGNREILEAGE
RNFNRFGGWLGKYSTTNKNIRLLEDAHSHILASQQANLDRESLRLDYLTLLLRQLTDPLK
TMPKDEAVQKVVEFMDTYSLSQEDFDTIVELSKFKGHPNPMDGIQPAVKSALTKAYKQGS
SSRVVRAADLVNIPGMKKPLKKRVAAILEPVGESLPEENGVASSEGDEEDSSDAENNDEL
VPGDTKPKLDLQSDKKKGIQVQLDLKSNGNGLNSKKMPAGRSKASGSAGKAAGGSGGKRK
R
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcggacatcaggaaatggttcatgaaggcgcaggacaagaatggtggcgcagcg
aagccggctgggacgacggcgttggcgaagaagcccgtgctcagcattccggagaagccg
tcggcggcgccatctatggcggcttgtgatcaagattgttcagctagaaggaagactagc
aagtactttgcatccaaaacagaaaaggaggaagacaccagtgcaggaaaaggtaccggg
agaggtttgcctaaaagaaaacttcagaaagtcagtgatgagcttgaggatgacatgaag
cctttgccagcaaaggaagtccataaagaagaagaagatgatgatgacgacgactttgtg
gcaccttcaaaaaggaaaactccggtgaagccaccaccatcaaagaagttgaagggtgca
tctactgctgaagctcatggaaagactggtcttgatgatgataacgaggacaagatggat
gaagacgctaagaccccttccaaggcatctggaagtggaaggggaaggggaagggggaga
gggaggggaggaagaggagcaggagcagcccatggaaagacaattggtcttgatgacgac
ggtgaggaggataagatggatgaagatgccaagaccccttccaaagcagctggaagggga
aggggaggagcctctgggggaagagggagaggagggggtgggagaggcttcatgaacttt
ggtgaaaggaaggatcctcctcacaaaggggagaaggaagtcccggagggtgcccctgac
tgtttaactggtttgacatttgtcataagtggcactcttgacagtcttgaacgtgaggag
gcaactgatctaatcaagcgttatggaggccgtgtgaccggctctattagcaaaaagacg
aattacctattggctgatgaagacgttggtggagtgaaatcaaataaagcgaaagaactg
ggcgtcccattcctaactgaagatggtttatttgatatgattcggaaatcaaagcctgca
aaggctactgtggcaaaacatcaaagcgacaaaaattcagaaaagcagcaaaaatcacca
atgaagagttctccagttaaagttgaaagaagagatggtaatcaaattaccacaggcaaa
aatatttcaccaaagagtaataaaggaagtgcctccattgacaaccaaaaggtcaacatt
gttgaccgtggttctttgcaatggactgaaaagtatcggcccaaagttccaaatgacata
gttgggaaccaatcaatggttaaacagcttcatgattggttgagaagttgggaggaccaa
ttccttcattctggccagaagggtaagggaaagaagcaggctgatagtggagctaaaaag
gctgtgttgttgagtggacctccaggtattggtaagaccacaactgctaaagttgtcagt
cagatgcttggattgcaggctattgaggttaatgcaagtgatagccgtggtaaggcagac
tctaagattgagaaaggtgttgggggcagtacatcaaattctatcaaagagcttattagt
aatgcaactctgaattatagtaacaaccgattaaaacgacccaaggctgtactagtcatg
gatgaagttgatggtatgtctgctggagatcgtggtggtgttgctgatcttattgctagc
attaagatgtccaagattcctataatttgcatttgcaatgaccgttatagccagaaattg
aagagccttgtaaattactgcttgctactcaacttcagaaaaccaaccaagcaacagatg
ggtaagaggttgatggaaattgccaagaaggaaggtcttcaagctcaagagaatgcaatg
gaagaacttgcagaaagagtacacggggatattcgcatggctcttaaccatttgcaatat
atgagcctctcccagtccgtggtcaaatatgatgatataagacagcgacttaatagtagc
acaaaagatgaagatatttcccccttcacggctgttgacaagctgtttggttttaatggt
gggagactacggatggatgagagaattgatttgagcatgagcgatcctgatttagtccct
ctgattatccaggaaaactatatcaattatcggcctatcactgttgggaaggatgacagt
ggagttaaaagaatgaattttcttgctcgtgctgctgaatctatagcggacgctgatatt
gttaatgtacaaataagaagatatcgacagtggcaattgtcccaagctgcttgtttgtct
tcatctatagttcctgctgctttgatgcatgggaatagagagatccttgaagcaggtgag
cgaaacttcaataggtttggtggatggttgggaaagtactcgaccacaaataaaaacata
aggctactggaagatgcccatagtcatattcttgcctcccagcaagcaaatttggacagg
gagtcattgaggctggattacctcactcttctcttgagacaattgactgatccactgaag
acaatgcccaaggatgaagctgtgcaaaaagtggtggagtttatggatacctactcttta
agccaggaagactttgacacaattgttgaattatcaaaatttaagggtcatccaaatcct
atggatggtattcaaccagctgttaaaagtgccttaacaaaagcatacaaacaaggaagt
agttctcgtgttgttcgagcagcagatctagtaaatatcccaggcatgaaaaagccatta
aagaaacgagtggcagcaatccttgagccagtgggagagagtttgcctgaagaaaatgga
gtagcgtcatctgaaggcgatgaagaggattcctctgatgctgaaaataatgatgaactg
gtgcctggtgacacaaaaccaaaactggacctgcagagtgataagaagaaagggatccaa
gtgcagctcgacctgaagagcaatggcaatggcttgaactcgaagaagatgccggctggt
agatcaaaagcttctggctctgctgggaaggctgctggaggctcaggtgggaagaggaag
aggtaa
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