Oryza sativa japonica (Japanese rice): 4350856
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Entry
4350856 CDS
T01015
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4350856
03041 Spliceosome [BR:
osa03041
]
4350856
03036 Chromosome and associated proteins [BR:
osa03036
]
4350856
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4350856
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
4350856
mRNA cycle factors
Common to processing body (P body) and stress granule
4350856
Spliceosome [BR:
osa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
4350856
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
4350856
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
ResIII
Motif
Other DBs
NCBI-GeneID:
4350856
NCBI-ProteinID:
NP_001410146
LinkDB
All DBs
Position
11:join(24898035..24898784,24898900..24898983,24899701..24899943,24901174..24901341,24901534..24901647,24902017..24902529)
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AA seq
623 aa
AA seq
DB search
MATPSRTSWADVADADPAPAPAPAANGPARPDRSSYVPPHLRNRGASSGGGAAAPPPSSS
SSSAPPPRAAPGLLAPRPAAAGMGRMGGGGGGGGFGGPRRWDREPNPFGNDGDAAAGAGD
EPEVFDAHQNTGINFDAYEDIPVETSGREVPPPVGTFAEIDLGQALNDNIRRCKYVRPTP
VQRYAIPISLAGRDLMACAQTGSGKTAAFCFPIISGIMRGPPAQRPQRGGMRTACPLALI
LSPTRELSMQIHEEARKFSYQTGVRVVVAYGGAPINQQLRDLERGVDILVATPGRLVDLL
ERARVSLQSIRYLALDEADRMLDMGFEPQVRRIVEQMDMPPPGARQTMLFSATFPKEIQR
MASDFLENYIFLAVGRVGSSTDLIVQRVEFVQEADKRSHLMDLLHAQRDSATPGKPTLTL
VFVETKRGADSLEHWLCMNGFPATSIHGDRNQQEREYALRSFKSGHTPILVATDVAARGL
DIPHVAHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMARSLAELMQESNQ
EVPAWLSRYAARPSYGGGGGRNRRSGGGSRFGGRDFRRDSSSGRGGGDYYGGGSSGGAGG
YGGSSAYGGGGYGGGAGAPSAWD
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccctcccgcacctcctgggccgacgtcgccgacgccgaccccgccccggcc
cccgcccccgccgccaacggccccgcccgccccgaccggagctcctacgtgcccccccac
ctccgcaaccgcggggcttcgtcgggtgggggcgcggcggcgcctccgccctcatcatcc
tcctcctccgcgccgccccctcgcgccgcccctggcctcctcgccccccgccccgccgcc
gccggcatggggaggatgggcggcggcggtggcggcggaggattcggtgggccaaggagg
tgggaccgggagccgaacccgttcgggaacgacggcgacgccgcggcgggggcgggggac
gagccggaggtgttcgacgcgcaccagaacaccgggatcaacttcgacgcgtacgaggac
atccccgtggagacgagcgggagggaggtgccgccgccggtgggcacgttcgccgagatc
gacctgggccaggcgctcaacgacaacatccgccggtgcaagtacgtgcgccccacgccc
gtgcagcggtacgccatcccgatctcgctcgcggggagggacctcatggcgtgcgcgcag
accgggtccgggaagacggccgccttctgcttccccatcatcagcggcatcatgcgcggc
ccgcccgcgcaaaggccccagcgcggcgggatgaggaccgcctgccccctcgcgctcatc
ctctcccccaccagggagctctccatgcagattcatgaggaggcgagaaaattttcctat
cagaccggtgtcagggtggttgttgcatatggaggagcacctattaatcagcagttgaga
gatcttgagaggggtgttgacattcttgtggctactcctggccgtttggttgatttattg
gagagggcaagagtatctttgcaatctatcagatatcttgcccttgatgaggcagataga
atgcttgatatgggttttgaaccgcaagttaggagaattgttgagcaaatggacatgcct
ccgccaggtgccaggcagacaatgttgttcagcgccacgttcccaaaagaaatccagaga
atggcatctgacttcctggagaactacatattcctggctgttggaagagttgggtcaagt
acagatttgattgtacagagagttgagtttgtgcaggaggcagacaaaagaagccacttg
atggatctgcttcatgcacaaagagacagtgctactccaggaaagccaactcttacactt
gtctttgtggaaaccaaaaggggtgctgattcgttggagcactggttgtgtatgaatgga
tttccagctacttctattcacggtgatagaaaccagcaggaaagagagtatgctttgaga
tccttcaaaagtggacatactcctattctagttgcaactgatgtggcagcccggggcctt
gacattcctcatgttgctcatgttgtgaactttgatcttcccaatgatatagatgattac
gtccacaggattgggaggacagggagggcaggaaaaagtggtcttgcaactgctttcttc
aatgagaataactcttccatggcaaggtctttggctgagctaatgcaagaatctaatcaa
gaggtacctgcgtggttgtctcgctatgctgctcgcccatcttatggtgggggtggtggg
aggaacagaaggtccggtggtgggagccgcttcggtggccgtgacttccgcagggattct
tcctctggaagaggtggcggtgactactatggtggaggcagcagcggtggagctggtgga
tatggtggttcctctgcatatgggggtggcggctatggtggcggcgcgggtgctccaagt
gcctgggattaa
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