Oryza sativa japonica (Japanese rice): 4350981
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Entry
4350981 CDS
T01015
Symbol
OsJ_34542, U2AF65A
Name
(RefSeq) splicing factor U2af large subunit A
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4350981 (OsJ_34542)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4350981 (OsJ_34542)
Spliceosome [BR:
osa03041
]
Complex A
U2 snRNP components
U2 related factors
4350981 (OsJ_34542)
Complex B
4350981 (OsJ_34542)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_MUD2_C
RRM_7
RRM_occluded
DUF8489
RRM_PARP14_3
BUD22
DUF4154
Motif
Other DBs
NCBI-GeneID:
4350981
NCBI-ProteinID:
NP_001391495
LinkDB
All DBs
Position
11:complement(join(27101202..27101339,27101438..27101505,27101829..27101970,27102063..27102683,27102775..27102876,27102986..27103056,27104090..27104160,27104552..27104659,27104770..27105008,27105477..27105641))
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AA seq
574 aa
AA seq
DB search
MAEHEEQPYEGNGNGGDPAPASAYAEYPAPEGSPPAAAAKPTGFSDGATDGGRSQHETQP
HDGRSSKSRERERERDKDKERDRDRDRDRRDRDRGDKDRDRDRHREHRDRSERREHHDRE
RSDDRDRRRGHDSERRRDRDRDGHRRHRSRSRSPSKGRDRRSRSRSRSRSSKRVSGFDQG
PQAAIPALAAGAAPGQVPVVAPAISGMLPNMFNLTQTPFTPLVIQPQAMTQQATRHARRV
YVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASN
AMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRI
FVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALN
GIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQAQMQKLMFQVGGGALPTKVVCLTQV
VSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESS
TKAKNGMHGRKFANNQVVAVFYPEDKFAEGQYDG
NT seq
1725 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcacgaggagcagccctacgagggcaacgggaacggcggcgacccggccccc
gcctccgcgtacgctgagtaccctgcgcccgaggggtccccgcccgccgccgccgccaag
cccaccggcttctccgatggcgccaccgacggcggccgttctcagcacgagacacagcca
catgatggcaggtcctcaaagtctagagagagggaaagagaacgggacaaggacaaggaa
cgcgacagagaccgtgatagagaccgaagggaccgcgaccgtggtgacaaggacagggac
cgtgatcgccacagggagcaccgcgatagaagcgaaagaagggaacaccacgatcgtgaa
cgttctgatgaccgtgatcgacgccggggccatgattctgaaaggagaagagaccgtgac
agagatggtcaccgcaggcatcgatctcgctcccgctccccttcaaagggtcgtgatcgc
agatctagatctcgctcacgctctcgatctagcaagcgcgtgagtggatttgaccaggga
ccacaagcagccattcctgcgcttgctgctggagcagccccaggtcaggtacctgttgtg
gcccctgctatttctgggatgcttccgaacatgttcaatttgactcaaaccccgttcact
ccgcttgttattcagccacaagctatgacacaacaggctactcgacatgctaggcgtgtt
tatgttggtggacttcctccaactgctaatgagcatactgttgctgtatacttcaatcaa
gttatggctgctgttggtggaaatacagctggtccaggtgatgctgttcttaatgtctac
ataaaccatgataagaaatttgcatttgtggagatgaggtctgtggaggaagcaagcaat
gcaatggccttggatggtataatgtttgagggagcacctgtgaaggttagaaggccaaca
gactataatccttccctagcagctgcattgggtccaagccagccaaaccccaacctcaat
cttgctgctgttggcttaacacctggctcagctggaggtttagaaggtcctgaccgcatt
tttgtgggtgggctgccctattacttcacagaagctcaagtcagggagttgctcgaatcc
tttggacctctgcgtggttttgatcttgtgaaggacagagaaactggaaactcgaagggc
tatgctttctgtgtataccaggatcttaatgtcacggacattgcctgtgctgctcttaat
ggtatcaagatgggagacaagaccctcactgttaggcgagctaaccaaggagcttctcaa
cctaggccagagcaagaaagcatgctcctgcatgtacaacaacaggcgcaaatgcagaaa
ctcatgttccaagttggagggggagcactgcctacaaaggtggtatgcctgacccaagtg
gtttcaccagatgaactgagggatgatgaggagtatgaggacatcgtgcaagacatgagg
gaagaagggtgcagatacggtaacctggtgaaagttgtgatcccgcgacctgatcccagc
ggtgctcctgttgctggagttgggagggtgtttttggaatttgcagatgtagagagctcg
accaaggcgaagaatgggatgcacgggaggaagtttgccaacaaccaggtggtggctgtc
ttctaccctgaggacaagttcgctgaagggcaatacgacggttga
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