| Entry |
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| Symbol |
OsJ_34542, U2AF65A
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| Name |
(RefSeq) splicing factor U2af large subunit A
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| KO |
| K12837 | splicing factor U2AF 65 kDa subunit |
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| Organism |
osa Oryza sativa japonica (Japanese rice)
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| Pathway |
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| Brite |
KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4350981 (OsJ_34542)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:osa03041]
4350981 (OsJ_34542)
Spliceosome [BR:osa03041]
Complex A
U2 snRNP components
U2 related factors
4350981 (OsJ_34542)
Complex B
4350981 (OsJ_34542)
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| SSDB |
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| Motif |
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| Other DBs |
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| LinkDB |
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| Position |
11:complement(join(27101202..27101339,27101438..27101505,27101829..27101970,27102063..27102683,27102775..27102876,27102986..27103056,27104090..27104160,27104552..27104659,27104770..27105008,27105477..27105641))
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| AA seq |
574 aa
MAEHEEQPYEGNGNGGDPAPASAYAEYPAPEGSPPAAAAKPTGFSDGATDGGRSQHETQP
HDGRSSKSRERERERDKDKERDRDRDRDRRDRDRGDKDRDRDRHREHRDRSERREHHDRE
RSDDRDRRRGHDSERRRDRDRDGHRRHRSRSRSPSKGRDRRSRSRSRSRSSKRVSGFDQG
PQAAIPALAAGAAPGQVPVVAPAISGMLPNMFNLTQTPFTPLVIQPQAMTQQATRHARRV
YVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASN
AMALDGIMFEGAPVKVRRPTDYNPSLAAALGPSQPNPNLNLAAVGLTPGSAGGLEGPDRI
FVGGLPYYFTEAQVRELLESFGPLRGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALN
GIKMGDKTLTVRRANQGASQPRPEQESMLLHVQQQAQMQKLMFQVGGGALPTKVVCLTQV
VSPDELRDDEEYEDIVQDMREEGCRYGNLVKVVIPRPDPSGAPVAGVGRVFLEFADVESS
TKAKNGMHGRKFANNQVVAVFYPEDKFAEGQYDG |
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| NT seq |
1725 nt +upstreamnt +downstreamnt
atggcggagcacgaggagcagccctacgagggcaacgggaacggcggcgacccggccccc
gcctccgcgtacgctgagtaccctgcgcccgaggggtccccgcccgccgccgccgccaag
cccaccggcttctccgatggcgccaccgacggcggccgttctcagcacgagacacagcca
catgatggcaggtcctcaaagtctagagagagggaaagagaacgggacaaggacaaggaa
cgcgacagagaccgtgatagagaccgaagggaccgcgaccgtggtgacaaggacagggac
cgtgatcgccacagggagcaccgcgatagaagcgaaagaagggaacaccacgatcgtgaa
cgttctgatgaccgtgatcgacgccggggccatgattctgaaaggagaagagaccgtgac
agagatggtcaccgcaggcatcgatctcgctcccgctccccttcaaagggtcgtgatcgc
agatctagatctcgctcacgctctcgatctagcaagcgcgtgagtggatttgaccaggga
ccacaagcagccattcctgcgcttgctgctggagcagccccaggtcaggtacctgttgtg
gcccctgctatttctgggatgcttccgaacatgttcaatttgactcaaaccccgttcact
ccgcttgttattcagccacaagctatgacacaacaggctactcgacatgctaggcgtgtt
tatgttggtggacttcctccaactgctaatgagcatactgttgctgtatacttcaatcaa
gttatggctgctgttggtggaaatacagctggtccaggtgatgctgttcttaatgtctac
ataaaccatgataagaaatttgcatttgtggagatgaggtctgtggaggaagcaagcaat
gcaatggccttggatggtataatgtttgagggagcacctgtgaaggttagaaggccaaca
gactataatccttccctagcagctgcattgggtccaagccagccaaaccccaacctcaat
cttgctgctgttggcttaacacctggctcagctggaggtttagaaggtcctgaccgcatt
tttgtgggtgggctgccctattacttcacagaagctcaagtcagggagttgctcgaatcc
tttggacctctgcgtggttttgatcttgtgaaggacagagaaactggaaactcgaagggc
tatgctttctgtgtataccaggatcttaatgtcacggacattgcctgtgctgctcttaat
ggtatcaagatgggagacaagaccctcactgttaggcgagctaaccaaggagcttctcaa
cctaggccagagcaagaaagcatgctcctgcatgtacaacaacaggcgcaaatgcagaaa
ctcatgttccaagttggagggggagcactgcctacaaaggtggtatgcctgacccaagtg
gtttcaccagatgaactgagggatgatgaggagtatgaggacatcgtgcaagacatgagg
gaagaagggtgcagatacggtaacctggtgaaagttgtgatcccgcgacctgatcccagc
ggtgctcctgttgctggagttgggagggtgtttttggaatttgcagatgtagagagctcg
accaaggcgaagaatgggatgcacgggaggaagtttgccaacaaccaggtggtggctgtc
ttctaccctgaggacaagttcgctgaagggcaatacgacggttga |
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