Oryza sativa japonica (Japanese rice): 4351052
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Entry
4351052 CDS
T01015
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4351052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4351052
03041 Spliceosome [BR:
osa03041
]
4351052
03032 DNA replication proteins [BR:
osa03032
]
4351052
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
4351052
Spliceosome [BR:
osa03041
]
Complex A
U1 snRNP components
Sm proteins
4351052
U2 snRNP components
4351052
Complex B
U1 snRNP components
4351052
U4/U6.U5 tri-snRNP components
4351052
Complex C
U2 snRNP components
4351052
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
4351052
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
4351052
NCBI-ProteinID:
XP_015617232
UniProt:
Q2R066
B9G8N6
LinkDB
All DBs
Position
11:join(28274355..28274360,28275092..28275179,28275483..28275520,28275633..28275697,28276036..28276099)
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AA seq
86 aa
AA seq
DB search
MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQLANTEEYIDGQFSGNL
GEILIRCNNVLYLRGVPEDAEIEDAE
NT seq
261 nt
NT seq
+upstream
nt +downstream
nt
atggcgactgttccagttaacccaaaacctttcttgaacaacctgacagggaagcctgtc
attgtcaaacttaagtggggtatggaatacaaaggataccttgtttctgtggactcttat
atgaatctgcagctggctaatacagaggagtatattgatggacaattctctggaaacctg
ggagagatactgattaggtgcaacaatgttctgtatctccgaggcgttccagaggatgcc
gagatagaggatgcagaatga
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