Oryza sativa japonica (Japanese rice): 4351059
Help
Entry
4351059 CDS
T01015
Name
(RefSeq) WD repeat-containing protein VIP3
KO
K12602
WD repeat-containing protein 61
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4351059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4351059
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
4351059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
ANAPC4_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_1st
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_Vps41
Beta-prop_SPT8
Beta-prop_SCAP
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
eIF2A
Beta-prop_DCAF12
Beta-prop_IFT140_1st
Beta-prop_NUP159_NUP214
Beta-prop_DCAF4
Ge1_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_Nup120_160
CFAP43_N
WD_LRWD1
WD40_like
Beta-prop_RIG_1st
RMC1_N
Beta-prop_WDR11_2nd
Cytochrom_D1
Beta-prop_IFT80_2nd
Beta-prop_LRRK2
Motif
Other DBs
NCBI-GeneID:
4351059
NCBI-ProteinID:
XP_015617388
UniProt:
Q2R037
Q0IR99
LinkDB
All DBs
Position
11:join(28462898..28463245,28464607..28465230)
Genome browser
AA seq
323 aa
AA seq
DB search
MKLAGLKSVDGAHEESIWAAAWVPAADHRPAALLLTGALDETVRLWAPDDLASAAASPSR
GHALGVVSLAAHPAGAVAAAVSLDSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPKGSAL
AAAGGGSGSVKLWDTEKWKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSM
DGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGA
MSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRPPGG
TGVRAGRLASVSDDKSITLYDYS
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcgcggggctcaagtcggtggacggggcccacgaggagtccatctgggcggcg
gcgtgggtgcccgcggcggaccaccgccccgcggcgctgctcctgacgggcgccctcgac
gagaccgtccgcctctgggcccccgacgacctcgcctccgccgccgcctccccctcgcgg
ggccacgcgctcggggtggtgtcgctcgccgcccaccccgcgggcgccgtcgccgccgcc
gtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccgtcgccacg
ctcgaggcccctccctccgaggtctggggcatccagttccaccccaagggtagtgctctg
gctgcagctggtggtggcagtggatcagtgaagctctgggacacagagaagtggaagcca
attaccagccttgctgttccgcgtccagagggagctcgccctgataaaacaggaagcggc
aagtttgtcctttcagttgcatggagtcctgatggcaagctcttagcttgtggttccatg
gatggcaccatcgctgtgtatgacgcagttcgcatgaagttcctccaccaccttgagggc
catcacatgccagtgagatcaatggtgttctctccagtggacccgcacgtgctcttcact
gcctccgacgattgccacatccacatatacgacgccaaggagaagagcctcattggggcc
atgtcagggcatgcgagctgggtgctgagcatcgacgtgagcccagacggcatggcggta
gcgacaggctccagtgaccgcacggtccggctttgggacatcaacacgagggcgtcggtg
cagacgatgagcaaccacaatgatcaggtctgggctgtcgccttccgaccaccgggtggg
acaggagtccgcgcaggccggcttgccagcgtgtcagatgacaagagcatcaccctgtac
gattactcatag
DBGET
integrated database retrieval system