KEGG   Oryza sativa japonica (Japanese rice): 4351059
Entry
4351059           CDS       T01015                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4351059
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4351059
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     4351059
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st WD40_MABP1-WDR62_2nd WDR55 EIF3I ANAPC4_WD40 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_MABP1-WDR62_1st Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_TEP1_C NBCH_WD40 Beta-prop_Vps41 Beta-prop_SPT8 Beta-prop_SCAP Beta-prop_IFT122_1st WDR90_beta-prop_4th eIF2A Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 Beta-prop_DCAF4 Ge1_WD40 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 CFAP43_N WD_LRWD1 WD40_like Beta-prop_RIG_1st RMC1_N Beta-prop_WDR11_2nd Cytochrom_D1 Beta-prop_IFT80_2nd Beta-prop_LRRK2
Other DBs
NCBI-GeneID: 4351059
NCBI-ProteinID: XP_015617388
UniProt: Q2R037 Q0IR99
LinkDB
Position
11:join(28462898..28463245,28464607..28465230)
AA seq 323 aa
MKLAGLKSVDGAHEESIWAAAWVPAADHRPAALLLTGALDETVRLWAPDDLASAAASPSR
GHALGVVSLAAHPAGAVAAAVSLDSYVRVFDVDSGSSVATLEAPPSEVWGIQFHPKGSAL
AAAGGGSGSVKLWDTEKWKPITSLAVPRPEGARPDKTGSGKFVLSVAWSPDGKLLACGSM
DGTIAVYDAVRMKFLHHLEGHHMPVRSMVFSPVDPHVLFTASDDCHIHIYDAKEKSLIGA
MSGHASWVLSIDVSPDGMAVATGSSDRTVRLWDINTRASVQTMSNHNDQVWAVAFRPPGG
TGVRAGRLASVSDDKSITLYDYS
NT seq 972 nt   +upstreamnt  +downstreamnt
atgaagctcgcggggctcaagtcggtggacggggcccacgaggagtccatctgggcggcg
gcgtgggtgcccgcggcggaccaccgccccgcggcgctgctcctgacgggcgccctcgac
gagaccgtccgcctctgggcccccgacgacctcgcctccgccgccgcctccccctcgcgg
ggccacgcgctcggggtggtgtcgctcgccgcccaccccgcgggcgccgtcgccgccgcc
gtctccctcgacagctacgtccgcgtcttcgatgtggactcgggctcctccgtcgccacg
ctcgaggcccctccctccgaggtctggggcatccagttccaccccaagggtagtgctctg
gctgcagctggtggtggcagtggatcagtgaagctctgggacacagagaagtggaagcca
attaccagccttgctgttccgcgtccagagggagctcgccctgataaaacaggaagcggc
aagtttgtcctttcagttgcatggagtcctgatggcaagctcttagcttgtggttccatg
gatggcaccatcgctgtgtatgacgcagttcgcatgaagttcctccaccaccttgagggc
catcacatgccagtgagatcaatggtgttctctccagtggacccgcacgtgctcttcact
gcctccgacgattgccacatccacatatacgacgccaaggagaagagcctcattggggcc
atgtcagggcatgcgagctgggtgctgagcatcgacgtgagcccagacggcatggcggta
gcgacaggctccagtgaccgcacggtccggctttgggacatcaacacgagggcgtcggtg
cagacgatgagcaaccacaatgatcaggtctgggctgtcgccttccgaccaccgggtggg
acaggagtccgcgcaggccggcttgccagcgtgtcagatgacaagagcatcaccctgtac
gattactcatag

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