Oryza sativa japonica (Japanese rice): 4351124
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Entry
4351124 CDS
T01015
Symbol
U2AF65B
Name
(RefSeq) splicing factor U2af large subunit B isoform 1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4351124 (U2AF65B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4351124 (U2AF65B)
Spliceosome [BR:
osa03041
]
Complex A
U2 snRNP components
U2 related factors
4351124 (U2AF65B)
Complex B
4351124 (U2AF65B)
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SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_occluded
DUF4154
RRM_PARP14_3
Motif
Other DBs
NCBI-GeneID:
4351124
NCBI-ProteinID:
NP_001410174
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All DBs
Position
11:join(29552851..29552904,29553945..29554225,29554413..29554517,29554898..29554974,29556006..29556070,29556180..29556221,29556304..29556363,29556502..29557122,29557234..29557369,29557586..29557653,29557730..29557867)
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AA seq
548 aa
AA seq
DB search
MADDHAAAADLVDGGRPEGDTHSREDGLSKPRDKDREREKDKDRERHRDRDRDRGRDRDR
DKDKEKDRDKERDRDRDRDKDRDRHHRHHRERREHRDRSDDHDRHRSRDSERRRDHERDG
RRRHRSRSRSRSRGRDRRSRSRSRSKSKRVSGFDMAPPAQAVVPQFPAIPTPSQFPGTAI
PGMFPNMLPMGVGQFNPLVIQPQAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAA
IGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRPTDYNP
SLAAALGPSQPSPNLNLAAVGLTPGSAGGLEGPDRIFVGGLPYYFTEAQVRELLESFGPL
RGFDLVKDRETGNSKGYAFCVYQDLNVTDIACAALNGIKMGDKTLTVRRANQGAAQPRPE
QESILLQAQQQVQLQKLVYQVGALPTKVVCLTQVVSADELKDDEEYEDIMEDMRLEAGKY
GNLIKVVIPRPDPSGLPVAGVGKVFLEYADVDGATKAKTAMHGRKFGGNPVVAVFYPENK
FSSAEYDA
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaccacgccgccgccgccgacctcgtcgacggcggacgccccgagggcgat
acgcattcacgtgaagacggattatcaaaaccaagagataaagatagagaaagagaaaaa
gacaaggacagggaacgccacagggaccgtgacagagatcgaggaagagaccgagatcgg
gacaaggacaaggaaaaagacagagacaaagaaagggacagggatagggacagggacaag
gatcgggatcgccaccataggcatcaccgtgaaagaagagaacacagagatcgctctgat
gatcatgatcgccacagaagccgtgattctgaaaggagaagagaccatgaacgggatggg
cgtcgcaggcatcggtctcgctcacgctctcgttctaggggcagggatcgcagatctagg
tctcgctctcgttcaaaaagcaagcgagttagtggatttgatatggcgcctccagctcaa
gctgtggttccacaatttcctgctattccaaccccaagtcagtttccgggcactgctatt
cctggaatgtttccaaacatgctcccgatgggtgttggacagttcaatccccttgttatc
cagccgcaagcaatgacgcaacaggctactcgacacgcgagacgtgtttatgttggtgga
cttcctccaactgctaatgaacagtcagttgcaatatactttaatcaagtcatggctgct
attggaggaaatactgctggtccaggtgacgctgttcttaatgtctacataaaccatgac
aagaaatttgcttttgtggaaatgaggtctgtggaggaagcaagcaatgcaatggcactg
gatggcattttgtttgaaggggctccagtgaaggttaggagaccaacagactataaccct
tctctggcagctgccttgggccccagccagccaagccccaatctgaatcttgctgcagtt
ggcttaacacctggttcagctggagggctagaaggcccagatcgtattttcgtgggtggc
cttccatattacttcactgaggctcaagtccgggagttgcttgaatcctttgggcctctt
cgaggatttgaccttgtgaaggatagggaaactggtaactcaaagggctatgcattctgt
gtctaccaagatctcaatgtcactgacatagcctgtgctgctctgaatggcatcaagatg
ggagacaaaaccctaactgttagaagggcaaaccagggagcggctcagcctagaccagaa
caggaaagtatcctgttgcaggcacagcaacaagtgcaattacagaaacttgtatatcaa
gttggagcactccctacaaaggttgtgtgcctgacccaggtggtttcggctgatgaatta
aaagatgacgaggagtatgaagacattatggaggacatgagattggaagcaggcaaatat
ggtaatctgattaaggttgtcatccctcgccctgatcctagtggattaccagttgctgga
gttggaaaggttttcttggagtatgcagatgtggacggcgccaccaaagcaaagacggca
atgcatggaaggaagttcggtggaaatccagttgttgcagtgttctaccctgagaacaag
ttttctagtgcggaatatgacgcgtag
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