KEGG   Oryza sativa japonica (Japanese rice): 4351236
Entry
4351236           CDS       T01015                                 
Name
(RefSeq) THO complex subunit 4A isoform X1
  KO
K12881  THO complex subunit 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03013  Nucleocytoplasmic transport
osa03015  mRNA surveillance pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4351236
  09122 Translation
   03013 Nucleocytoplasmic transport
    4351236
   03015 mRNA surveillance pathway
    4351236
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4351236
   03041 Spliceosome [BR:osa03041]
    4351236
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     4351236
    TREX complex
     4351236
Spliceosome [BR:osa03041]
 Complex C
  Other components
   EJC/TREX
    4351236
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    4351236
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3 RRM_10 DUF8251
Other DBs
NCBI-GeneID: 4351236
NCBI-ProteinID: XP_015620448
LinkDB
Position
12:join(25835..25993,26060..26167,26550..26618,26710..26894,27954..28146)
AA seq 237 aa
MAADSLLDMSLDDLITNKYKRRSRPGPAPSARRSHSRAATRSAAAPYHAITFQAPPTAYV
HPTPAANVETGTKLYISNLDYAVSNEDIKELFSEVGDVKRYSINYDRSGRSKGTAEVVFS
RKSDALAAVKRYNNVQLDGKPMKLELIGINIEPPPPAIFGFAAPAGYFDFPPKSAEIFSG
PGRGGRGWPRGRGGFGGRGRGHVGRGRGRGDRGSRKISAEDLDADLDKYHAEGMQMS
NT seq 714 nt   +upstreamnt  +downstreamnt
atggcggcggactcgctgctggacatgtccctcgacgacctcatcaccaacaagtacaag
cgccgctcccgtccaggtccagcgccctctgcccgccgctcccactcccgcgccgccacc
cgctccgctgccgctccctatcacgccatcacctttcaggcgccgcccacggcctacgtc
cacccgacgcccgcggccaacgtcgagaccggcaccaagctctacatctccaacctcgac
tacgccgtctccaacgaggacatcaaggaactcttctctgaggttggcgatgtcaagcgt
tactctattaactatgacaggagtggaagatccaagggaactgcagaggttgtattttcc
agaaaatctgacgccctggctgctgttaagaggtacaacaatgtgcagctggatggcaaa
cctatgaaacttgagctcattggtataaatattgagccaccaccacctgctatttttggt
ttcgctgcaccagctggatacttcgattttcctcccaaaagtgctgaaattttcagtgga
cctggcaggggtggaagaggatggcctcggggcaggggtggatttggtgggcgtggtcgg
ggtcatgtgggtcgtgggcgagggaggggagaccgtggaagtcggaagatttctgctgaa
gacctggatgctgacttggacaagtaccatgcggaaggaatgcaaatgagctag

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