Oryza sativa japonica (Japanese rice): 4351244
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Entry
4351244 CDS
T01015
Name
(RefSeq) uncharacterized protein isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4351244
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4351244
03019 Messenger RNA biogenesis [BR:
osa03019
]
4351244
04121 Ubiquitin system [BR:
osa04121
]
4351244
Enzymes [BR:
osa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
4351244
Transcription factors [BR:
osa03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
4351244
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4351244
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4351244
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
4351244
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Nup35_RRM_2
PcfJ
zf-UDP
Motif
Other DBs
NCBI-GeneID:
4351244
NCBI-ProteinID:
XP_015619668
UniProt:
Q2QYY3
Q0IQS9
LinkDB
All DBs
Position
12:join(129179..129180,129481..129580,129658..129785,129999..130161,130258..130370,131086..131169,131253..131301,131391..131482,131740..131869,131966..132042,132118..133736,134084..134281,134347..134885)
Genome browser
AA seq
1097 aa
AA seq
DB search
MMTMSDDGDRTCPLCAEDMDITDQQLKPCKCGYEICVWCWHHIIDMAEKEDTEGRCPACR
TRYDKDRIVKMAATCDRTVVEKNVDKKQKTQKVKSKAAVTVEAKKHLASVRVIQRNLVYI
IGLPANLCNESILERREYFGQYGKVLKVSVSRPTGAPSQQAPTNNSISVYITYAKEEEAI
RCIQAVHNFVLEGKVLRACFGTTKYCHAWLRNMTCGNPDCLYLHDVGSQEDSFTKDEIIS
AYTRSRVPQMASNVSQRRAGTVLPPPAEDFSYSAVVAAKHPIKNGITNTANQSRLSPPNS
SSGRSTLPPAASWGHRDLNTRTTATGVASSQSLTKSKADPQSNSFSSSSTVSSTKLPSSW
NDDTSTVPKMTEGRDSLSKTLKPYKPGIAKETQAVTSLESSLDIDFSTIPSAWNDDDVTS
DGMSKGSDEKQVVNDNGKFECSVSSKPAESGHLTSKSTTSPKKDIAVNSTRQSPLNCVSS
PSVSKSEVKDGDGDYQVTNMASKTSTLVIRKDQSNQAAIDTATEDTRSESTDIDRLSVGV
SSVTLSRKDGVQSIAENQQPDAILSTSVVVPFSQNLKLAECNDSTCQPSSDKHRDWCSDI
QSSVSPQLNDIESYAVATDKSHGRVLDAADQASSSPYVHFPNTAPISLWNGKEINHTSTS
DRTSTMMQPGLLSSVDSTSTMLNGHQEGLGTIYAPGKVSEHPRMKNHQPGAVGAVRIDNI
GSFDKAVSVNKDESSIIADILSLEFDPWDESYSTANNFAKMLSASEKNDVLFDARSWKTK
TSNSESRFSFARQDNQGSLLDSSMRNYKSEQNFSLPSQNSHGNIYQSGIAFQSPEEGFSK
SNSLTMLDMLATGTSKPKVSAPPGFSAPARVPTGFSSGFSSHEGLNPPPGFSSHNGPNPP
PGFSSQGGSNQIYGSAYSETRPFDDLLGINTSHYQPQLARQTSDIEFVDPAILAVGKGRM
PGISDSGLEMKTSHTFPSQLQTSNDPRFQLLMQQNMPSHQNVGFAEHVQDAFNPMNDNYL
ASRLIPQNHGSLSSYTQMSLQQPRSSHLTNGHWDGWGDLRQGNNVSMPDMSRMLYPTEAN
NFHMLGSNDLYNRAFGL
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atgatgaccatgagcgacgatggagaccgcacctgcccgctctgtgctgaggacatggac
atcactgaccagcagctcaagccctgcaaatgcggctatgagatttgtgtctggtgctgg
caccacatcattgatatggctgagaaagaggacactgagggccgctgccccgcatgccgc
actcgctatgacaaagataggattgtcaagatggctgccacttgtgacaggacggtagtg
gagaaaaatgtggacaagaaacagaagacccaaaaggtcaagtcaaaggccgcggtaact
gtggaagctaagaaacatcttgctagcgtcagggttatccagagaaacctcgtgtacata
attggactacctgcaaatttatgcaacgaaagcatacttgagcgcagggaatactttggt
cagtatggcaaggttctgaaagtttcagtttctcggccgactggggctccttcccagcag
gcaccaacaaacaacagtatcagcgtatatattacatatgccaaagaagaagaggccatc
aggtgtattcaagctgtacacaattttgttttggaagggaaagtgttaagagcgtgcttt
ggtactacaaagtattgccatgcatggctgcggaacatgacctgtggaaatccagattgt
ctctatttacatgatgtaggaagccaggaagatagtttcactaaagatgagataatctca
gcatatacaaggagtagggttccccaaatggcgtctaatgtttctcaaagacgcgcaggg
actgtattacctcctccagcagaagatttctcatatagtgcagtggttgcagctaaacat
ccaatcaagaatggaataactaatactgcaaatcaatccaggctttcgcctccaaacagt
agttctgggagatccacacttccaccagctgcttcatgggggcatcgcgatttgaatacc
aggacaacagcaactggggtggcatcgtcacaatctcttactaaatcaaaagcagatcct
caaagtaattcattctcgagttcttcgactgtttcaagtacaaaactaccttcttcatgg
aatgatgacacaagcacagttccgaaaatgacggaaggacgagatagtttgtctaaaacc
ttgaagccatataagcctggtattgcaaaggaaacccaagctgtaacatcactggagtca
tcgcttgacatagacttctctaccataccttcagcttggaacgatgatgatgtcacatca
gatggcatgtcaaaaggaagtgacgagaagcaggttgtaaatgacaatggaaagtttgaa
tgttcagtttcttcaaagccagctgaatcagggcatcttacatcgaagtcaacgacatca
ccaaagaaagacatcgcagtaaacagtaccaggcaaagtcctctaaattgtgtatcaagt
ccatcggtttctaaatcagaagtaaaggatggtgatggtgattaccaagtaaccaacatg
gcttctaaaacatctactttggtaattagaaaggaccaatctaatcaagcagctattgac
acagcaaccgaagatactagatctgagagcacggatattgataggctttctgttggagta
tcttcagtaacattaagcagaaaagatggggttcaaagtattgccgaaaaccaacaaccg
gatgcaatcctaagtacttcagttgtggtgccctttagtcagaatttgaaacttgctgag
tgtaatgattctacatgtcagcctagttcagataagcatcgtgattggtgttcagatatc
cagagtagtgtgtctcctcagttaaatgacatagaaagttatgcagtagccactgataaa
tctcatggtagagtgctggatgctgctgatcaagcttcgtcttcaccatatgtccatttc
cctaacactgctcctatttcactgtggaatggtaaagagattaaccatacatcaacaagt
gatagaacttccacaatgatgcaacctgggctgttatcttcagttgacagcacttctacc
atgttaaatggacatcaagaagggctagggactatatatgcacctggtaaggtttctgaa
catcctagaatgaaaaaccatcagcctggagcagttggtgcagtgagaattgataacata
ggcagttttgacaaggctgtaagtgtaaataaggatgagagcagcataattgctgatatt
ttgtctttggagtttgatccatgggatgagtcgtattcaacggctaacaattttgctaag
atgcttagtgcatctgaaaagaacgatgtgctttttgatgcacgttcatggaaaacaaaa
accagcaatagtgagtctagattttcatttgctagacaagataatcaaggaagcctccta
gattcatctatgagaaattataaaagtgagcagaatttcagtttgccatcccagaattct
catggaaacatttatcagagtggcattgcatttcaatctcctgaggaaggtttctcaaag
agcaactctcttactatgttggatatgctagctaccggcacatcaaagcctaaagtatcc
gcgcctcctggattttcagcaccagcaagagttcctactgggttttcttctggattttca
tcccatgaggggttgaatccacctccaggattttcatctcataatgggcctaatccccct
cctggattttcttctcagggtgggtctaatcagatctatggttcggcatactcagaaact
cgcccatttgatgatcttttgggtataaatactagccattatcaaccacagttagctaga
caaacaagtgatatagaatttgttgatcctgctatattggctgtgggtaaagggcggatg
cctggaataagtgattcagggttggagatgaaaacttcccatacttttccttcgcagttg
caaacatcaaatgatccaaggtttcaattacttatgcagcagaacatgccttcccatcaa
aatgttggatttgcagaacatgttcaagatgcattcaaccctatgaatgataattatctt
gcatcccgacttatacctcagaaccatggttctctatcctcttacacacagatgtcactc
caacaacctagaagctcacatcttacaaatggtcattgggatggctggggtgatttgaga
caagggaataatgtttccatgcctgacatgtcaaggatgttatatccaactgaagcaaac
aacttccacatgctgggttcaaatgatctgtataacagagcttttggactgtga
DBGET
integrated database retrieval system
