Oryza sativa japonica (Japanese rice): 4351654
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Entry
4351654 CDS
T01015
Symbol
OsJ_35406, OsRFC2, RFC2
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03030
DNA replication
osa03410
Base excision repair
osa03420
Nucleotide excision repair
osa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4351654 (OsJ_35406)
03410 Base excision repair
4351654 (OsJ_35406)
03420 Nucleotide excision repair
4351654 (OsJ_35406)
03430 Mismatch repair
4351654 (OsJ_35406)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
osa03032
]
4351654 (OsJ_35406)
03036 Chromosome and associated proteins [BR:
osa03036
]
4351654 (OsJ_35406)
03400 DNA repair and recombination proteins [BR:
osa03400
]
4351654 (OsJ_35406)
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
4351654 (OsJ_35406)
DNA Replication Termination Factors
ELG1-RFC complex
4351654 (OsJ_35406)
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
4351654 (OsJ_35406)
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
4351654 (OsJ_35406)
Check point factors
HRAD17(Rad24)-RFC complex
4351654 (OsJ_35406)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
AAA_lid_RFC1
Rad17
AAA_22
RuvB_N
Mg_chelatase
AAA_assoc_2
AAA_14
AAA_11
AAA_5
nSTAND_NTPase5
SLFN-g3_helicase
ResIII
AAA_24
AAA_16
nSTAND3
AAA_2
PhoH
DNAX_ATPase_lid
AAA_25
AAA_19
AAA_30
AAA_7
AAA_23
AAA_28
RNA_helicase
Cdc6_lid
bpMoxR
Gp44_lid
IstB_IS21
Parvo_NS1
Motif
Other DBs
NCBI-GeneID:
4351654
NCBI-ProteinID:
NP_001410281
LinkDB
All DBs
Position
12:join(3902563..3902606,3902731..3902809,3902903..3902982,3903956..3904075,3904158..3904227,3904306..3904379,3904461..3904581,3904668..3904730,3904816..3904875,3905224..3905349,3905426..3905509,3905980..3906078)
Genome browser
AA seq
339 aa
AA seq
DB search
MAPLVPSSQPWVEKYRPRQVKDVAHQEEVVRVLTTTLQTADLPHMLFYGPPGTGKTTTAL
AIAYQLYGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSARKGGYPCPPYKIIIL
DEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSN
RILHICNEEGLSLDAQALATLSTISNGDLRRAITYLQSAARLFGSSISSTDLISVSGAIP
EDVVKSLLASCKSGEFDVANKEVNNIIADGYPVSQLISQFLDVIVNADDIPDEQKARICK
KLGEADKCLVDGADEYLQLLDVASETIRALFDMPQTLVF
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgctcgtgccgtcctcgcagccatgggtggagaaataccggccgaggcaggtg
aaggatgtcgcgcaccaggaggaggtggtccgggtgctcaccaccaccctccagaccgcc
gaccttccgcacatgctgttctacggcccgcctggcaccgggaagaccaccaccgcgctt
gccattgcttaccagctctacggtccagagctctacaagtcaagagttctagaacttaat
gctagtgatgatcgtggaattaatgtggtgaggactaagatcaaggactttgctgctgtt
gctgttggttctgcacgaaaaggcggttatccctgcccaccatacaagattattatacta
gatgaagcagattcgatgacagaagatgcccagaatgctttaaggcgtactatggagact
tactccaaagtgacaagattctttttcatatgcaattacatcagcaggataatagaacca
cttgcatcaagatgtgcaaagtttagattcaagcctctttcagaagaagtaatgagcaat
cgcattttgcatatatgcaatgaagaagggctcagtcttgatgctcaggcattggctaca
ctaagcaccatctctaatggtgacctccgccgtgctataacctatcttcagagcgctgct
cgcttatttggatcttctatttcttctactgacttgattagtgtttcaggggctatccct
gaagacgttgtcaagtcattgcttgcatcttgcaaatctggtgaatttgatgtggcaaac
aaggaagtcaataatattattgcagatggataccccgtttcacagttgatctcacagttt
ctagatgtgatagttaatgccgatgatattccagatgagcagaaggcaagaatatgtaaa
aagcttggggaagcagataagtgcttggtcgatggagcggatgagtatttacagcttttg
gatgtggctagtgagactatccgtgctctttttgacatgccacaaacgctggtcttctaa
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