Oryza sativa japonica (Japanese rice): 4352633
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Entry
4352633 CDS
T01015
Name
(RefSeq) TATA-binding protein 2-like
KO
K03120
transcription initiation factor TFIID TATA-box-binding protein
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4352633
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4352633
03021 Transcription machinery [BR:
osa03021
]
4352633
Transcription factors [BR:
osa03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
TATA-binding proteins
4352633
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
4352633
RNA polymerase III system
TFIIIB
4352633
RNA polymerase I system
SL1/TIF-1B
4352633
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TBP
DUF3378
DUF4295
Motif
Other DBs
NCBI-GeneID:
4352633
NCBI-ProteinID:
XP_015618516
UniProt:
Q2QN41
B7ETR1
LinkDB
All DBs
Position
12:join(24742290..24742390,24743426..24743513,24744099..24744170,24745110..24745160,24745229..24745273,24745375..24745467,24745554..24745655,24745731..24745804,24746250)
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AA seq
208 aa
AA seq
DB search
MAAAEAAAEAAAALEGSEPVDLVKHPSGIIPTLQNIVSTVNLDCKLDLKAIALQARNAEY
NPKRFAAVIMRIREPKTTALIFASGKMVCTGAKSEQQSKLAARKYARIIQKLGFAAKFKD
FKIQNIVGSCDVKFPIRLEGLAYSHGAFSSYEPELFPGLIYRMKQPKIVLLIFVSGKIVL
TGAKVRDETYTAFENIYPVLTEFRKVQQ
NT seq
627 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggaggcggcggcggaggcggcggcggcgctggaggggagcgagcccgtg
gacctggtcaagcacccctccggcatcatccccacgctccaaaacatcgtgtcgacggtc
aatttggattgcaaattagacctcaaagctatagctttgcaagcacgcaatgcagaatat
aatccaaagcgttttgctgcagttatcatgagaataagagaaccgaaaactacagctctg
atatttgcatcgggtaaaatggtatgtactggggcaaagagcgaacaacaatcaaagctt
gcagcaagaaagtatgctcgtattatccaaaagcttggctttgctgctaagtttaaggac
ttcaagattcagaacattgttggttcttgtgatgttaaatttccaatcaggctggaggga
cttgcatattctcatggtgctttctcaagttatgagcctgaactctttcctggtctgata
tatcggatgaagcaaccgaagattgttcttctgatttttgtttcaggcaagattgttttg
accggagcaaaggtgagggatgagacgtataccgcctttgagaacatataccctgtgcta
acagagttcagaaaagtccagcaatga
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