KEGG   Oryza sativa japonica (Japanese rice): 9266400
Entry
9266400           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K12385  Niemann-Pick C1 protein
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04142  Lysosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
    9266400
 09140 Cellular Processes
  09141 Transport and catabolism
   04142 Lysosome
    9266400
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02000 Transporters [BR:osa02000]
    9266400
Transporters [BR:osa02000]
 Solute carrier family (SLC)
  SLC65: NPC-type cholesterol transporter
   9266400
SSDB
Motif
Pfam: NPC1_N Sterol-sensing NPC1_MLD Patched
Other DBs
NCBI-GeneID: 9266400
NCBI-ProteinID: XP_015636550
LinkDB
Position
4:complement(join(28730541..28730621,28730709..28730777,28730864..28730930,28731098..28731165,28731649..28731759,28732503..28732560,28732654..28732690,28732767..28732860,28733314..28733379,28733486..28733550,28733699..28733843,28734016..28734087,28734272..28734421,28734613..28734682,28735099..28735175,28735266..28735334,28736145..28736228,28736365..28736408,28736519..28736659,28736767..28736965,28737624..28737752,28738032..28738118,28738210..28738323,28739332..28739439,28739530..28739625,28740069..28740134,28740294..28740395,28740477..28740569,28740776..28740859,28741308..28741425,28741538..28741614,28741806..28741988,28742736..28742983,28743250..28743400,28743601..28743717,28744565..28744672,28744860..28744959,28745135..28745187,28746369..28746449))
AA seq 1293 aa
MALVRRRRGVAGGGGPALAAVAVALMQLVFLVPPTRAQQSNGTSRVVPAEGYCSMYGICA
QRSDGKVLNCVNATKAVKPDTLFSARIQSLCPTITGDVCCTVDQFDTLHQQVQQAIPFLV
GCPACLRNFLNLFCEMSCSPNQSLFINVTSVKQVNNTMTVNGIDYYVTSTYGEELYNSCK
DVKFGTLNTRAMDFLGGGAKNYKEWMAFIGRQADLNQIGSPYLITFPSDISGSTAVKPLN
ATIYSCGDPSLGCSCGDCPSSSVCTGSLLPQLNTETSCSVKMGSLKAKCLDFSLVVVYLV
LLCIFLFGAFLHRTRRSGIFSHTKPLKNAEDKIHSSNNGKVPDSSAQVSEAASAPVQSAH
PSVIQTYMSTFFRKHGTFVAKHPLLVLFVSLLVPTLLCIGLIRFKVEIRPEKLWVSSGSR
AADEKQYFDSHLAPFYRIEQLVLATSAFGGSEAPTIVNDNNMKLLFQIQKKIDDLRANYS
GSTVSLADICLKPLGTECATQSVLQYFQLDPKKYDDSGIDHAKFCFQHYTTEETCLSTFQ
SPIDPSTILGGFPGNNFTEASAFVITYPVNNKVETTGQENGKAVAWERAYVNLVKEEILP
MVLAHNLTMSFSSESSIQDELNRESTADAITIVISYIVMFAYISFTLGDRPSHLLSLFVS
SKVLLGLSGVVLVMLSVLGSMGFFSAIGVKSTLIIMEVIPFLVLAVGVDNMCILVHAVKR
QPDGLDLEERISTALVEVGPSITLASLAEVLAFAVSAINPMPATRVFSMFAALAVLLDFL
LQVSAFVALIVLDFRRAQDGRIDCMPCARVKSSVVASDGGNHQGLPLLARYMKNVHAPIL
GYRAVKFVVIAVFVGFSFASIALSTRLQPGLEQKIVLPRDSYLQDYFDDLATYMKVGPPL
YFVIKNFNYSSASEHTNKICSINQCDSNSLLNEIAKQSLSPETSYIAKPAASWLDDFLIW
MSPEAFGCCRKFVNGSYCPPDDQPPCCQHDQDSSSCSASGACNNCTTCFLRSDLHNGRPS
TTQFKEKLPWFLDALPSSDCSKGGKGAYSTSLDLNGYENGIIQASAFRTYHTPLNKQSDY
VNSMKAARDFSSKMSKELQMQMFPYSVFYIFFEQYLGVWKTAIMNICVCLGTVFVVCFVV
TSSLWASIIILIVLAMIVLDLMGMMAILGIQLNAISIVNLVMSIGIAVEFCVHITHAFMI
GIGNRESRARQALSTMGASVFSGITLTKLVGVIVLRFAKSEVFVVYYFQMYLALVIIGFL
HGLIFLPVVLSLCGPPSKVMKPLEQSQPSASSD
NT seq 3882 nt   +upstreamnt  +downstreamnt
atggcgctcgtccggcgccggcgaggcgtcgccggcggcggcggcccggccctcgccgcc
gtggcggtggctctgatgcagcttgtttttctcgtgcctcctacaagagcccagcaatct
aatggtacttcaagggttgtacctgcagaaggatactgttccatgtacggtatttgtgca
cagcgaagtgatgggaaggtcttgaactgcgtgaatgcaaccaaagctgttaagccagac
actttgttttctgcgaggattcagagtttgtgcccaactatcactggcgatgtctgttgt
acggtagatcagtttgacacattacatcaacaggtgcaacaggctattccatttcttgtt
ggatgcccagcatgcctgaggaatttcttgaatctcttttgtgaaatgtcttgttcccca
aaccaaagcctcttcattaacgtgacttcagtaaaacaggttaataatactatgactgtt
aatggcatagattactatgtaacaagtacctatggtgaagagctatacaactcctgcaag
gatgttaaatttggcacactgaacacacgtgcaatggatttcctaggtggaggcgctaaa
aattacaaagagtggatggcatttattgggcgacaggccgaccttaatcagattggttca
ccttatttgataacatttccatccgatattagtggttcgactgcggtgaagccgctgaat
gctacaatttattcttgtggagatccatctttgggctgttcatgtggtgattgtccttct
tcttctgtttgcacgggatccttgttgcctcagttgaacacagaaacctcctgttcagtt
aaaatgggttctctgaaggccaaatgcttggacttctcactggtggttgtataccttgtg
ttattgtgtatatttttatttggggcattcttacacagaacacgaagatctggcatcttc
tcacacacaaaaccattgaaaaatgcagaagataagatccactcaagcaacaatggcaag
gttcctgatagctctgctcaggtgtctgaagctgcatccgctcctgtccaatcagcccat
ccttctgttattcaaacttacatgtcaactttctttaggaagcatgggacatttgttgct
aaacatcctcttcttgtgttatttgtatccttgcttgtccctaccctattatgcattggt
ctaattcgtttcaaggttgaaatacgaccagagaagctttgggttagttctggaagtcgg
gctgctgatgagaagcaatattttgatagtcatcttgcaccattctataggattgagcag
cttgtattagccacttctgcatttggtggttctgaagctcctacaatagtcaatgacaac
aatatgaaattactatttcagattcagaaaaagattgatgatctgcgtgcaaattattct
gggtcaacagtatctcttgctgacatctgcttaaagccgcttggtacagaatgtgctaca
caaagtgttctacagtatttccaactggatcctaaaaagtatgatgattcgggtatagac
catgctaagttttgttttcagcattacactactgaagagacatgtttgagtacttttcag
tcacctattgatcctagtaccatattaggtggttttccaggaaacaattttactgaggct
tctgcatttgtaataacatatcctgtgaacaacaaggttgagacaacaggacaggagaat
ggaaaagctgtggcttgggaaagggcatatgttaatcttgtcaaggaagaaatattgcca
atggtattagcacacaatcttacaatgtccttctcatccgagagttctatccaagatgaa
ttaaacagagagagtacagctgatgcaattacaatagtgattagctatattgtgatgttt
gcctacatatcattcactctcggagaccgtccttctcatttgctgtcactatttgtttca
tcaaaggtccttcttggcttgtctggggttgtcctggtgatgctttcagttctaggatca
atgggattcttcagtgcaatcggagtgaaatcaactctaatcataatggaagtaatcccg
tttctagtattggctgtcggtgtggacaacatgtgtatccttgtgcacgctgtcaaacgc
caaccagatggcttggatttggaagaacggataagtactgcattggtggaagttggacca
tccattacattggccagtttggctgaagttttagcttttgctgtgagtgcaatcaatcca
atgcctgcgaccagagtattttccatgttcgctgcattggcggtgcttctggatttcctt
ctccaagtttcagcttttgtggcccttattgtacttgatttcaggagggctcaagatgga
aggattgattgtatgccttgtgcgagagtaaaatcgagtgttgttgcttctgatggtggt
aaccaccaggggcttcctttgcttgcacgatacatgaagaatgtccatgcaccaattctc
ggttatcgggcagtgaagtttgttgtgattgctgtgtttgtaggattttcatttgcaagc
atagcattgtccactagactgcaaccaggattggagcagaaaattgttctaccacgagat
tcctacttacaggattattttgatgatcttgcaacatacatgaaagttggcccaccacta
tattttgtcataaagaacttcaattatagctcagcatcagaacatacaaataagatatgt
tcaatcaaccagtgtgattcaaattctcttttaaacgagatagcaaaacaatcattatct
cccgagacaagttacattgctaaacctgctgcctcatggcttgatgatttcctaatatgg
atgtctcctgaagcgtttggatgctgtcggaaatttgttaatggaagttattgcccacca
gatgaccagcctccatgctgtcaacatgatcaagactcaagctcatgtagtgcaagtgga
gcatgcaataattgtacaacgtgcttcttacgatcagacttgcataatggacgcccatcc
acaactcaattcaaagagaaacttccatggtttcttgacgcacttccgtcaagtgattgt
tctaagggtggcaaaggagcttattctacaagtttggaccttaacggttatgaaaatggc
attatacaagcgtcagcatttcgaacataccatactcctctcaataaacagagtgattat
gttaattctatgaaagctgcacgggacttcagctctaaaatgtccaaagaattacagatg
caaatgttcccatattcagtattttacatattctttgagcaatacctgggagtatggaag
acggctatcatgaacatatgtgtttgccttggtacagtgtttgtcgtttgcttcgtagtc
acaagcagtttgtgggcttcaataatcattttaatagtgctggccatgatagtactggat
ttgatgggaatgatggctatccttggcattcagctcaatgcaatttctattgtaaacctt
gttatgtcaataggaattgctgttgaattctgtgttcatatcacacatgccttcatgata
ggcattggaaatagagaaagccgtgcaaggcaagctctatcgacgatgggggcttctgta
ttcagcggaatcaccttgaccaaacttgttggagttattgtcctacgttttgcaaaatct
gaagtttttgtggtatactatttccaaatgtacttagcacttgtcatcataggctttctg
catggccttatcttcttaccggttgttctgagtttgtgtggccccccttcaaaggtgatg
aaacctctcgaacagagtcaaccttcagcttcgtccgattaa

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