Oryza sativa japonica (Japanese rice): 9267107
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Entry
9267107 CDS
T01015
Name
(RefSeq) uncharacterized protein isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
osa03016
]
9267107
Enzymes [BR:
osa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
9267107
Transfer RNA biogenesis [BR:
osa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
9267107
Prokaryotic type
9267107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
9267107
NCBI-ProteinID:
XP_015637752
LinkDB
All DBs
Position
5:complement(join(11690490..11690726,11696729..11696791,11697223..11697585,11697724..11697863,11698752..11698884,11698951..11699043))
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AA seq
342 aa
AA seq
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MLGLAPLRFVSPPPRGAAAVSAAAIGGHSISLGDGCHCAVPPPGEKDADKARAETTEGAS
YKWRMVIAYDGTKFKGWQYQPSPPTIQCSIENALTRITKLDRKELCLVGAGRTDTGVHAW
GQVAHFTTPFSYHCLDSMHSAINGLLPHEIRVREISAAKPEFHARTSTRSKIYHYKIYNG
PVMDPFHNHYAYHSAYKLNSQAMREAAKHFVGTHDFTSFANAVHNDRVRSPIKKIMRFDV
IEMGAILQLEIEGTGFLYRQVRNMVALLLQVGREALPPDIVAKIIAARDRKELAKVALSA
PPHGLYLMSVNYDKEMLQPPEGAPHISFGRTHQISKCKLLFY
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgctgggtttagcaccactccggtttgtttctccccctcctcgcggcgccgccgccgtt
tccgccgccgctatcggcggacatagtatctcgctcggggatggctgccattgcgcggtg
ccgccgccgggggagaaggacgccgacaaggcgcgggcggagacgacggagggagcgtcg
tacaagtggcgtatggtgatcgcctacgacgggaccaagttcaaaggttggcagtatcaa
ccatcgcctccaaccatacaatgtagtattgagaatgcgctaacacgcatcacaaagctg
gatcgcaaggagctctgcttggttggagctggcagaacagatacaggtgttcatgcatgg
ggtcaggtggcgcatttcaccacgcctttttcctaccattgtcttgatagcatgcactct
gcaatcaatgggcttcttccacatgagattcgagtgagggaaattagtgcagcaaagcct
gaatttcatgcccggacatccacaaggagcaaaatttatcattacaagatttataatgga
ccagtcatggatccctttcataatcattatgcataccatagtgcgtataagcttaattca
caagctatgcgggaggctgcaaagcattttgttggaacacatgactttacatctttcgct
aatgcagtacacaatgatcgtgtacgcagtcccataaagaagataatgcgctttgatgtt
attgaaatgggtgctatcttacagcttgagattgaaggcactggctttctgtacagacaa
gttaggaacatggtagctttgttgctacaagttggaagggaggcactaccacctgacatc
gtcgcaaaaatcatcgcagcaagagaccgcaaggaactagcaaaggtggcattatcagca
ccacctcatggattgtacctcatgtcagtcaactatgacaaggaaatgctacagcctcct
gagggtgcccctcacattagctttggaaggactcatcagattagcaaatgtaaactccta
ttttattga
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