KEGG   Oryza sativa japonica (Japanese rice): 9268124
Entry
9268124           CDS       T01015                                 
Name
(RefSeq) LOW QUALITY PROTEIN: protein RNA-directed DNA methylation 3
Organism
osa  Oryza sativa japonica (Japanese rice)
SSDB
Motif
Pfam: KOW1_SPT5 KOW4_SPT5 Spt5-NGN KOW KOWx_SPT5 KOW5_SPT5 Spt5_N
Other DBs
NCBI-GeneID: 9268124
NCBI-ProteinID: XP_015639328
LinkDB
Position
5:join(25119418..25119676,25120661..25120908,25120992..25121147,25121531..25121689,25121790..25121873,25122437..25122504,25122619..25123008,25123090..25123138,25123211..25123363,25124782..25124937,25125280..25125331,25125405..25125563,25125633..25125669,25125793..25125827,25125924..25125975,25126189..25126238,25127165..25128499,25129263..25129400,25129482..25129532,25129656..25130843)
AA seq 1605 aa
MAVKGKGKAVASASASGGGVKRRKGPGDAAGPSSSSSAAAEAAKRRRRSGVLQFFDDAAF
VGDEEEDEDEEEEEEEEMFASDGDDDGFFTEGKAENVNLKRTERSHPLPFLGIVKEEELS
GDELEEFIKDRYSSRVKHTPFDGSTNVQDDEFTEDGLLKEPVIWRIKCMVGRERQIAFCL
MQKYVDLQKFGTKVPIISAFALDHVRGFVFVEAEKACDVTEACKGFCSVYISRINSVPVA
EVPSLLSSRAKPFAISPGTWVRMKTGIYKGDLAQVVSADEGRKRVMIKLIPRVDLRAISK
KIGGAIPLKEAAIPAPRLISSQELEFFGSHIERKHDRQTNDFYEVLDGLMFKDGFLYKRV
ALSSLIYWGIQPTETELLKFSSTPTITSSTDDLDWVSSMYGPKKRNVPKEPDMEPSSSKA
SSSKGKYSKASSKASTSTEDYEDKGFNLHDLVLFGRRDFGVVIAFEKDGLRILKGGPEGS
AVTVRKQDIKDVCADKMLTAVDHKKKIICINDTVNVLEGPFQGKQGVVKHLYMGILFIHN
ESESENSGFFCAQCSSCENVKKRKELASFTFGNSDDNPIPMFSYEQNEQRDNERPYRSTR
EQLFSIGEMLRIRKGPMKGYLCRVVRIFRNDVTVKLDSLLKIVTVQAEFLSVPAKRGDNS
SGAPSGPFGSEADKPSWDNGLPSFGSDSWQPFSSAALPVQNADGESEVDPWCKKTSSSAN
DSDPWGTKTKSASVDVWNNSTTQVENSSDNAWDKQPGGSGPNIGGSSWDRPATDKESEKS
DNWGEACKETEKTGSDTDPWGSKVKEIDLKETDSWGKASMQPEKKLEDDSQGWGQPVGKS
NQDQEKGADKCGAWDTVIAGSSSSVPGRGDDDSWIKTDTLPVAQDDAWGNSKDCSDGAAG
WNETRTSKQSHSTGGWDAAAANLNESSDVDAHKDSWGKAKDTTANAEEKNNESGNWNKAG
PLDKVCGSDWGSPKFSSGDGPSSWNKGDKIGGDSQNGSWSRPGGNFEGGRGFGRGRGRGR
GRESGDFGGRNDQGSWKNSGTSDSSGRPSWRSDSQVEKEVGDSGGYRGRGRGRGQYGGQG
RGDNGWRNGGQSNSEFGRSDADAPNWGNKGVSNKGSWDSGDNWNAPKSSDENQTSAWNSS
EDKRPSGGQEQQSGAWASKMTSTAGAEDKSDAWGTKAEGNSGSTGGKWENASSGEEQQSD
PWGSKICSNEGKEQETDPWTSKVTSTADADDNNNVWNTSASDTASGSESKWGNAGAEEKA
DAWKSKVGSENSGGWNQKSSWGKPSFSGGEQEPAWSNPKNGDDNSGYGRGGFGRGNRGRG
RGRNFGDSGSSWSGGSYRNDESRGERSEDRWNTRDSDGGRGRGRGHFGRGDRNQGNNYGS
GDNNDRTWGSGRGNRDQDGCKNWNRNDDRRPFGQDRGGDWSQSSDWNANKGQSSWGAPKP
SGGDDQAGKNNGNNPWGAPADSMTGGGSGGGGSWKNKTEIPGIRLEEQGIQVRPQENLLG
VDQKMAKRKKDHGGKARGAGDKSVEAAPGTSRMEDGTAASARAPKEVAAVAPGTRRMAGT
VTRAPKEVVAAAPGTRQMADGTAAARVGAPAMVGGKLDPGSAAIH
NT seq 4819 nt   +upstreamnt  +downstreamnt
atggcggtgaaggggaagggcaaggcggtggcctccgcgtccgcatccggcggcggggtc
aagcggcggaagggccccggcgacgcggcggggccctcttcctcctcctcggcggccgcg
gaggccgccaagcgccgccgccggtctggggtcctccagttcttcgacgacgccgccttc
gtcggggacgaggaggaggatgaggatgaggaggaggaggaggaggaggagatgttcgcg
tccgacggcgacgacgacggtttcttcaccgagggaaaggcagaaaatgttaacttaaaa
agaactgaaaggtcacaccctcttccgtttcttgggatagttaaggaagaggagctgagt
ggtgatgaacttgaagaatttatcaaggatcgttattcaagtcgagtgaaacacacccct
tttgatggctccaccaatgtacaggatgacgagtttaccgaggatggtctattgaaagag
ccagtaatttggaggatcaaatgcatggttgggcgtgagcgccaaattgctttctgcctc
atgcaaaagtatgttgatctgcaaaagtttggtaccaaagttccaattatctcagcattt
gcacttgatcatgtgagaggatttgtttttgttgaagctgagaaggcctgtgatgttaca
gaggcatgcaaaggattttgcagtgtttacataagcagaattaattctgttcctgtagct
gaagttcctagcttgctatcaagccgcgcaaaaccatttgcaatatctccaggtacatgg
gtgcgcatgaagactggaatttataaaggagatctagcacaggttgttagtgcagatgag
gggcgaaaacgggtgatgatcaagcttatacccagagttgatctccgggctatttcaaaa
aaaattggtggtgctattccactaaaagaagctgcaattcctgctccacgtctaatcagt
tcacaagaattagagttcttcggatctcatattgaaaggaaacatgatcgccagacaaat
gatttttatgaagtgcttgatggtctcatgttcaaagatggtttcctgtataaaagggtt
gcacttagttctttgatttactgggggatacaaccaacagaaactgaacttctcaagttc
tcttccactccaactattacaagttcaactgatgacttggattgggtctccagcatgtat
ggtcctaagaaaagaaacgttccaaaagaaccggatatggagccttcctcttcgaaagct
tcatcttctaaaggaaaatactccaaggcatcttctaaggcatccacttctactgaagat
tacgaggataaaggatttaatctccatgatcttgtactctttgggcgaagagattttggt
gtggtcattgcttttgagaaagatggtcttaggatattaaaaggtggtcctgaaggatct
gcagtaactgttagaaagcaggatattaaggacgtttgtgcagacaaaatgcttactgct
gttgatcataagaagaagataatatgtattaatgacaccgttaatgttctggaagggcca
ttccagggtaagcaaggagttgttaaacacttgtacatgggcatactgtttatccataat
gaaagtgaaagtgagaacagcggatttttctgcgcccagtgcagttcatgtgaaaatgtc
aagaagcggaaggaactggcaagtttcacttttggaaattcggacgataatcctattccc
atgttttcatatgaacaaaatgagcaacgggacaatgaaaggccttacaggagcactaga
gaacaacttttctcaattggggagatgctgcgtattcgaaagggtcctatgaagggctat
ctctgtcgagtagttcgaatatttcgcaatgatgtaactgttaagctagattcactgctg
aagattgtcacagtgcaagctgagtttctttcagtcccagctaaaagaggggataactct
tctggtgctccatctggtccttttggttcagaagccgataaaccctcatgggacaatgga
ttaccatcttttggaagtgattcctggcaacccttttcaagtgctgcattaccagttcag
aatgcagatggggaatctgaagttgatccatggtgtaagaaaacttcatcttctgccaat
gattctgatccatggggtacgaaaacaaaatctgcatctgttgatgtatggaacaacagt
accacacaagtagagaactccagtgacaatgcatgggataaacaacctggaggtagtgga
cctaatattggtggaagctcttgggacagaccagcaactgataaggaaagtgaaaaaagt
gacaactggggtgaggcatgcaaggagacagagaaaactggtagtgatacagatccctgg
ggaagcaaggtcaaagagatagatctgaaagaaacggatagctggggaaaggcttcaatg
caaccagagaagaagttggaggatgatagtcaaggatggggccaacctgttggcaagtca
aaccaagaccaagaaaaaggtgcagacaaatgtggggcttgggatactgttattgctggg
tcatcttcgtctgttcctggcagaggggatgatgactcctggattaaaactgatactttg
cctgttgctcaagatgatgcctggggcaactcaaaagattgtagtgatggggcagctggg
tggaatgaaactagaacatctaaacaaagccacagcactggaggatgggatgctgctgct
gccaacctgaatgaatcatctgatgtggatgcacataaggactcatggggcaaagcaaaa
gatacaacagctaatgctgaagaaaaaaataatgaaagtggaaactggaacaaagctgga
ccactagacaaagtttgtggcagtgattggggtagtccaaagttttccagtggtgatggt
ccatccagctggaacaagggagacaaaattggaggagattctcaaaacggcagctggagc
agacctggtggaaactttgaaggtggtcgtgggtttgggcgaggacggggcagaggcagg
ggccgagaatctggggatttcggtggcagaaatgaccaaggaagctggaagaactcaggg
actagtgacagttctggaaggccctcttggaggtctgatagtcaagttgagaaggaagtg
ggagattctggtggatatcgggggagaggaagaggaagaggccagtatggaggacaggga
agaggagacaatggttggagaaatggaggtcaaagcaattctgagtttggaaggagtgat
gctgatgcaccaaactggggaaataaaggtgtatccaataaaggttcttgggatagtggt
gacaattggaatgccccaaagtcatctgatgaaaatcaaacttccgcttggaacagttca
gaagataaaaggccatctggaggccaagagcaacaaagtggtgcttgggctagcaagatg
acttctactgctggcgctgaggataaaagtgatgcctggggcaccaaggcggaaggcaat
tctggtagcactgggggaaagtgggagaatgcttcatctggggaagagcagcaaagcgac
ccttggggaagcaagatctgttctaatgaaggcaaagaacaagaaactgacccttggaca
agcaaggtgacatccactgcagatgctgatgataacaataatgtctggaacactagcgca
agtgatactgcctctgggagtgagagcaagtggggcaatgctggggcagaggaaaaggca
gatgcctggaaaagtaaagtggggagtgaaaatagtggaggttggaatcagaaatcttct
tggggtaaaccaagcttctcaggtggagagcaggaaccagcttggagcaatccaaagaat
ggtgatgataacagtggatatggtaggggtggatttggacgaggaaatcgaggcagaggg
agaggaagaaattttggtgatagtggatcctcatggagcggaggaagttacagaaatgat
gagtcacgtggagagagatctgaagatcgctggaacacacgagattctgatggtggcaga
ggaagaggaagaggacactttggcagaggtgatcgcaatcaaggtaataactatggttcg
ggtgacaacaatgacagaacctggggttctggcaggggaaacagggaccaggatggttgc
aaaaattggaaccgaaatgatgacagaagaccgttcggtcaagatcgaggtggtgactgg
tcccaatcttccgactggaacgccaacaaaggacagtccagctggggagcgccaaaacct
tctggtggagatgaccaggcaggaaaaaacaatggaaacaatccgtggggtgctcctgct
gacagcatgactggtggtggatccggtggaggagggtcttggaaaaataagactgaggat
acctggaattcgtctggaggaacaagggattcaggtacgaccccaggaaaatcttcttgg
ggtggatcagaagatggccaaaagaaagaaggatcatgggggaaaagcgaggggagcggg
agacaagtcggtggaggcagctcctgggacaagccggatggaggatggaacagcagcaag
tgcgagggcacccaaggaggtggcggcggtagctcctgggacaaggcggatggcgggaac
agtaacaagggcacccaaggaggtggtggcggcagctcctgggacaaggcagatggcgga
tggaacagcagcagcaagggtgggagctccggcaatggtgggtggtaagctcgatccagg
atcagctgcaatccattag

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