KEGG   Oryza sativa japonica (Japanese rice): 9268632
Entry
9268632           CDS       T01015                                 
Name
(RefSeq) nuclear poly(A) polymerase 4 isoform X2
  KO
K14376  poly(A) polymerase [EC:2.7.7.19]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    9268632
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    9268632
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.19  polynucleotide adenylyltransferase
     9268632
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Poly(A) addition factors
     9268632
SSDB
Motif
Pfam: PAP_NTPase PAP_central PAP_RNA-bind NTP_transf_2 MTPAP-like_central Nrap_D2
Other DBs
NCBI-GeneID: 9268632
NCBI-ProteinID: XP_015643151
LinkDB
Position
6:complement(join(22202454..22202494,22202694..22202793,22202894..22203799,22204268..22204432,22204514..22204843,22204918..22204980,22205069..22205182,22205710..22205871,22205955..22206017,22207590..22207697,22208088..22208165,22208261..22208392))
AA seq 753 aa
MAACNAAAAAAVAEQPQKQYGITKPISLAEPAEVDLQKTAELEKFLVEAGLYESPEESAR
REEVLGELDKIVKDWVKQLTSQRGYTDQMVEEANAVLFTFGSYRLGVHGPGADIDTLCVG
PSYVNREEDFFIVLHDILAQTEEVTELQPVPDAHVPVMKFKFHGISIDLLYASVSLLVVP
PDLDISQGSVLYDVDEVTVRSLNGCRVADQILRLVPNVENFRTTLRCLKYWAKKRGVYSN
VTGFLGGVNWALLVARVCQLYPNAVPSMLVSRFFRVFTQWQWPNPVMLCAIEEDELGFPV
WDPRKYHRDRSHHMPIITPAYPCMNSSYNVSTSTLRVMMEQFQFGNKICQEIDISKANWS
ALFEPFQFFEAYKNYLQVDIIAEDGEDLRLWKGWVESRLRQLTLKIERDTYGMLQCHPYP
HEYADPSRQCAHCAFFMGLSRKEGAKIQEGQQFDIRGTVDEFRHDIGMYGYWRPGMELAV
SHVRRKQIPSYVFPEGYKRPRPSRHINHPQQSNKNDVEDGTANRSPDGQPKRKHDTAGVY
DSEPGRSVKRASISPSISPVHQKTSSPPSGNIADASGASGGSPVSLANGNLEQANCLNSP
LASEKSLDSVTSGSKCVGVEAVCPSDATKEHDNCGSNMKNCTTTTVAVSLKRVAEKVVSE
LVGSESLGGNKSGELLERAEDMGSALVENVHFGGNGVVQTGLPEELEPNNGIEVVSKAHA
GVNSDAPQKASLRHDPELNPYLQARGAVKGRWR
NT seq 2262 nt   +upstreamnt  +downstreamnt
atggcggcctgtaacgccgccgcagcggctgccgtcgccgagcagccacagaagcagtat
ggaattacgaaaccgatatcgttggctgagccggcggaggttgacctgcagaagacagcg
gagttggagaagttcttggttgaagccggtctgtatgagagtccggaggagtcggctagg
cgagaggaggtgctaggggagctcgataagattgtaaaagattgggtgaagcagttaacc
agccagagaggttacactgatcagatggttgaagaagcaaatgctgtactcttcacgttt
ggatcataccgtttaggggttcatggccctggagctgacattgatactttatgtgttggg
ccttcatatgtgaatcgtgaggaggatttctttattgtactacatgacatattggcacaa
acagaggaagttactgagttgcaacctgtacctgatgcacatgttcctgttatgaaattt
aaattccatggaatatcaattgaccttctttatgcgagtgtctctctcttagtagtacca
ccagacttggatatctcgcaaggatcagtactgtatgatgttgatgaagtaactgttcgc
agtcttaatgggtgcagagtagctgaccagattcttaggcttgttccaaatgttgagaac
tttcgaacaacgctaaggtgtttgaagtattgggcgaaaaaaagaggagtttactctaat
gttactggttttcttggcggtgtcaattgggctttacttgttgcacgtgtctgccagctc
taccctaatgctgtgccaagtatgcttgtctcaagattctttagagtttttactcaatgg
caatggccaaatcccgtgatgctttgtgctattgaggaggatgaacttggttttcctgtg
tgggatccacgcaaatatcaccgtgacagatctcatcatatgcccataataacccctgct
tacccgtgcatgaactccagctataatgtttcaacaagcacacttagggttatgatggag
caattccagtttggtaacaaaatttgccaggaaatcgatatcagtaaggctaattggtct
gctctttttgagcctttccaattttttgaagcatataagaattatctccaggttgacatc
atcgctgaagatggagaagatcttagactttggaagggatgggttgaatctcggttaaga
caacttactttaaagattgaaagagacacatatggaatgttacaatgccatccttaccca
catgagtatgctgacccttccagacaatgtgctcattgtgcttttttcatgggtttatca
aggaaagaaggtgcaaaaatacaggagggtcaacagtttgatattcgtggaacagtagat
gaatttaggcatgatatcggcatgtatgggtactggagacctgggatggagttggctgta
tctcatgttcggaggaagcagattccatcttatgtgtttccagagggctacaagagacct
cgtccttcgaggcatataaatcatccccagcagtctaataaaaatgatgttgaagatggc
acagcgaatagatccccagatgggcagcccaagcgaaagcatgatacagctggggtttat
gatagtgaacctggtagatctgttaagagggcctcaattagcccctcaattagcccagtt
caccagaaaacttcatcgcctccatcaggcaatattgctgatgcttccggtgcaagtggt
ggaagtccggtttcacttgccaatggcaatctagaacaagcaaattgcttgaattcacca
ctggcatctgaaaaaagtctggactctgttacatcaggctccaagtgtgtgggagtggaa
gcggtttgtcctagtgatgctactaaagagcatgataactgtggttccaatatgaagaac
tgcaccactacaactgtagctgtatctttgaaacgtgtggcagaaaaggttgtgtcagag
ctcgttggaagtgaaagcttgggaggcaacaaaagtggggagctattggagagagccgag
gacatgggaagtgccctggttgaaaatgtgcatttcggtggaaatggagtcgttcaaact
ggtcttcccgaagagttagagccaaacaatgggattgaagtggtttctaaagctcatgca
ggtgtgaactcggatgcgccacagaaggcatcattgaggcatgaccctgaactcaatcct
tatctgcaagcaaggggggctgttaagggaagatggcgataa

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