Oryza sativa japonica (Japanese rice) (RefSeq): 9270399
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Entry
9270399 CDS
T01015
Name
(RefSeq) DNA-directed RNA polymerase I subunit 1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
9270399
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
9270399
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
9270399
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
9270399
BRITE hierarchy
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_1
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpa2_4
Motif
Other DBs
NCBI-GeneID:
9270399
NCBI-ProteinID:
XP_015643540
LinkDB
All DBs
Position
6:24411901..24427041
Genome browser
AA seq
1741 aa
AA seq
DB search
MADVRPDEAASEEVNSIHFSFYNDDEIKRISVKQITKSDRVDAKNCPVPGGLLDPAMGPT
NDTDTCKSCGQQSIRCPGHFGHIELAKPLFNPLLFMSLKNLLQVTCFHCHKFRLNKEQAD
RYTNELELLVRGDIAHAKNLEDLGGKVLSKEDDETEATSGDKSARSERENKTWTSIQLKE
ALSIFSKLMKKRQKKCAHCEKKNPIIKNPIYGWLIKDTTSSSVRANAIANAKLSGDGHVN
DSRETGVSGLDEELTSPGTLSRRSTNETRRISDDTIKEMVASSGKKHLLTTEVESILKDL
WKKEARFCMLLCDFQQNTLSVSEKRRGYEMFFLKNLLVAPNRFRPSISSSLGIMEHPQNV
LLSKVQESNLALQQSIAASNHMEVLRRWMDLQRNVNVLYDSSKGLSKNEKNANGIRQLLE
KKEGILRQKMMGKRVNYACRSVISPDPYLAVNEIGIPPVFATRLTYPEKVTPWNARKLQE
AINNGADIHPGATHYRDNNNMYKLQAAPPKRRAIAKMLPASRGSISQPGKDPKCEFESKV
VYRHLQDGDVVLVNRQPTLHKPSMMAHVVRVLPGEKTIRMHYANCSTYNADFDGDEMNVH
FPQDEISRAEAINIVDANKQYIGPRSGDAVRGLIQDHIIGAVLLTKLDTFLSREEYNQLV
YGSVLSSTRRSGQFGKKISIIMDDDALEPVPPAIWKPKPLWTGKQVITTILNHVTKGRPP
FTVEKKGRIEKEYLIPEERNGDKVKTINPSEQVLYVHDNELIKGMIDKAQFGNYGIVHTV
HELYGPETAGVLLSSFSRLFTMVLQLHGFTCGVDDLLLSQESDMTREEILGKSEKHSKIV
HINFTRPKKDDKAEAKAEDIRPKEGDEAEDTRPKEGDEAEDTRPKEDHEAEDSTHPKEDH
EAEDSTHPKEDHEAEGDDEDQMKLQMEVEKIIRRNGESATVILDRNMSSELNTLTSKVNK
KVFPYGLRKPFPGNCLSLMTQTGAKGGLVNMTQISSLLGQQELEGKRVPRMISGKTLPCF
PPWDTSSRAGGFIGDRFLTGLRPQEYYFHCMAGREGLVDTAVKTSRSGYLQRCLIKSLES
LKVSYDHTVRDVDGSIIQFCYGEDGVDVLKTSFLDDKFRELSDNRRALLGKLDSHNDKHL
LLNPNGYISELPEKLIENAMEFLKSKRNEKGRYDIKEKELMKLLKVKYISSLVDPGEAVG
VVAAQSIGEPSTQMTLNTFHLAGRGEMNVTLGIPRLKELLMTASAKISTPFMKCPLLEDK
TWDDDEEEMDDKLKKARDAERLAAKLRTIDDAERIAAKLRRVRVADIVERIEVCTVPFHN
NNGCVSTLYKLQLKLYPQGLYPRQSELTVEECHETLRTVFIDAMDLAISKHLDLLHKINE
IQAVKSNDMESQRSDGVEESENGPTDEDNGVSDGENEDDLGADAEKWKRQEIDEMEYDDD
AEKEEGFDMDSESEEDTKSKPESEDHQAKLDEELEESEEGHVLDSSNKGENLKAKQATAR
LEDEMNEAEDEKAQVTIKFKKNIKWTIHYESTGLNFEVHYALQEQPHILLAQIAQRTARS
VFVKACKNIDRCEVNKPKKIDNNTINTPITLQTAGVNFEVFHKLVDYLDINEVRSNDIHA
MLNTYGVEAARATIIGEVKGVFGAYGIHVDMRHLNLIADFMTFDGGYRPMSRLGMGQFST
SPFGKMTFETATKFIVEAASHGESDTLDGPSASVCLGKPVKVGTGSFGLLQNFSLEQPVA
M
NT seq
5226 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgtgcggcccgacgaggccgcatcagaggaagtgaattctatccacttcagc
ttctacaatgatgatgaaattaagaggatcagtgttaaacagataacaaagtcggatcgt
gtcgatgccaagaactgtcctgtgccaggtggattacttgacccagcaatgggacccacg
aatgatactgacacctgcaagagttgtggtcagcagtccattcgctgccccggccatttt
ggccatatcgaattggcgaaaccactatttaatccattgctttttatgagtcttaaaaac
cttctccaggttacgtgcttccattgtcacaagttccggttgaacaaggaacaggcagac
agatacacaaatgagcttgaactattagtaagaggtgatattgctcatgctaaaaatttg
gaagacttgggtggcaaagtactttcgaaagaagatgatgaaactgaggccacttcaggt
gataaatcggctcgttcggagagggagaataaaacttggacatcgatccaactgaaggag
gctctttcgattttctcaaagctaatgaagaaaagacagaagaaatgtgcacattgtgaa
aaaaagaatccaattatcaaaaatcctatatatggttggttgatcaaggatacaacttct
tcctctgtaagagcaaatgcgattgccaatgctaaactgagtggagatggtcatgttaat
gactcaagagaaactggtgtttccggtcttgatgaagaactaacttcacctggtactttg
tccagaagatcaaccaatgaaacaagacgcatttctgatgatacaatcaaagaaatggtg
gcatcatcaggaaagaaacatctcttgactacagaggttgaatctattctgaaagatttg
tggaaaaaggaagcaaggttctgcatgttactatgtgatttccaacagaatacattgagt
gtatcagaaaagagaaggggctatgagatgtttttcttgaagaatctgctagtggcaccg
aacagattccgcccctcaattagctctagtcttggaatcatggaacatccacaaaatgtt
ctgctcagcaaagtgcaagagtccaatcttgcgcttcagcagagtattgctgcttctaat
catatggaagttcttagaagatggatggatctgcaaagaaatgtaaatgtgctgtatgat
agtagtaaaggcctttcaaaaaatgagaagaatgcaaatggtataaggcagttgttggaa
aagaaagaagggattcttcgacagaagatgatgggtaaaagagttaattatgcatgccgg
tccgttatatctccagatccatatttggctgttaatgaaattggaattcctcccgttttt
gccacacgattgacatatcccgagaaagtgacaccctggaatgccagaaagctacaagaa
gctataaataatggtgctgacattcatcctggcgcaacccattacagggataacaacaac
atgtacaagctacaagctgcccctcccaaacgccgtgcgattgctaagatgctacctgct
tctagaggatccatttctcaaccagggaaagatcccaagtgtgaatttgagagcaaagtg
gtatatcgacaccttcaagatggtgatgttgtactagtcaatcggcagcctactcttcac
aagcccagcatgatggcacatgttgttcgtgtgctacctggagagaagacaattcgaatg
cactatgctaattgcagcacatacaatgctgattttgatggagatgaaatgaatgtgcac
tttccacaagatgaaatatctcgtgctgaggccatcaacattgttgatgcaaataagcag
tacattggtccaaggagtggggatgctgtcagaggcctcattcaggaccacattattggt
gctgtactcctgacaaagctggacacctttctaagccgtgaggaatataatcagcttgta
tatgggtctgtgctctcttcaactcgtagatctggtcagtttggtaaaaagatatctatt
attatggatgatgatgcactcgaacctgtacctcctgctatttggaagccaaagccccta
tggacaggaaaacaggttataacaaccatcttgaaccatgtaacaaaaggtcgccctcca
tttactgtggagaagaaggggagaatcgaaaaagaatatctaatccctgaagaacgcaat
ggtgataaagttaaaactataaatccttcagagcaagttttgtatgttcatgacaatgag
ctcataaaaggcatgatagataaggcccagtttgggaactatgggatagttcatacggtt
catgaactatatggtccagagacagctggagtactactctcatcattcagtcgcttgttt
acgatggtcctgcagttgcatggatttacatgtggagtagatgatctgttactatcccaa
gagtcagatatgacgagagaggaaattcttggaaaaagtgaaaaacacagtaaaatagtg
catataaattttacacgtcccaaaaaggatgataaagctgaagctaaagctgaagatata
cgccccaaagagggtgatgaagctgaagatacacgccccaaagagggtgatgaagctgaa
gatacacgtcccaaggaggatcatgaagctgaagatagtacacatcccaaagaggatcat
gaagctgaagatagtacacatcccaaagaggatcatgaagctgaaggtgatgatgaagat
caaatgaaattgcaaatggaagtcgaaaaaattatacggaggaatggagaatctgcgact
gttatattggatagaaatatgtcaagtgaactgaatactttaacatctaaagtcaataaa
aaagtgtttccttatggtctacggaagccttttcctggaaattgtctctctcttatgact
caaactggagctaaaggtggtttggtcaacatgacacaaatttcatcattgctaggccag
caagaattagaaggaaagcgtgttccacgaatgatttctgggaagacgttaccttgcttt
ccaccgtgggatacttcttcaagagctggtggtttcatcggtgatcgatttttaactggt
ctccgtcctcaagagtactattttcactgcatggctggcagagaggggttggttgacaca
gcagtcaaaacttctcgtagtggttatcttcagcgttgtcttatcaaaagtctcgaatca
ttaaaagtctcatatgatcacacagtacgtgatgttgatggatcaatcatacagttttgc
tatggagaagatggagttgatgtgctcaaaactagctttctagacgacaaattcagggag
ctttctgataatagaagagctctccttggcaagcttgatagccacaatgacaagcacctg
ttattaaatccaaatggatacatttctgaattgcctgagaagctgattgaaaatgcaatg
gagtttctaaaatccaaaagaaatgagaaaggtcgttatgacattaaagagaaagagcta
atgaagttactgaaagtcaagtacatatctagtcttgtagatcctggggaagctgttggt
gtggttgctgctcaatccataggagaaccatcaacacagatgacgctcaacacttttcat
ctcgctggacggggtgagatgaatgttacgcttggtattcctcgtttgaaagaacttcta
atgactgcatcggctaaaattagtacaccttttatgaagtgtcctctgcttgaagataag
acttgggatgatgatgaagaagaaatggatgataaattaaagaaggcccgtgatgctgaa
cgattggctgctaaattaaggacgattgatgatgctgaacgaattgctgctaaattaagg
agggttcgtgtagctgacattgtagagagaattgaagtatgcacagttccttttcacaac
aataatggttgtgtttcaaccctgtataagttacagttgaaactctacccacaagggcta
tatccacgtcagtcagaacttacagtagaagagtgccatgaaaccttgagaactgttttt
attgatgcaatggatcttgctatcagcaaacatttagatttgctacacaaaattaatgag
atccaggcagttaagtcaaatgatatggagagtcaacggtctgatggagtcgaagaatct
gaaaatggacctactgatgaagacaatggtgtgagcgatggtgaaaatgaggatgatttg
ggagctgatgcagaaaaatggaaacggcaagagatagatgagatggagtatgatgatgat
gctgaaaaggaagagggttttgatatggatagtgaatctgaagaagataccaaatctaaa
cctgagagtgaagatcatcaagcaaaattagatgaagagttagaagagtctgaggaagga
catgtgctagattctagcaacaagggggaaaatttaaaagctaagcaagcaacagccaga
ctcgaagatgaaatgaatgaagctgaggatgaaaaggcgcaagtgaccataaagttcaag
aaaaacataaaatggactattcattatgaatcaacaggtttaaattttgaggttcactac
gctttgcaagagcaacctcatattctgttagcccagattgctcagagaacagctaggtct
gtttttgtcaaggcctgtaagaatattgatcgatgtgaagtgaataaaccaaagaagata
gataataatacgataaatactcccatcactctacaaacagcaggggtgaactttgaagta
ttccataagttagtggactatctcgatatcaatgaggtcagatccaatgatatacacgct
atgttgaacacatatggggtagaggctgcaagggcaaccatcattggggaagtgaagggc
gtattcggtgcttatggtatccatgttgacatgaggcatctgaacttgattgcggatttc
atgaccttcgacggcggttaccgaccgatgagcaggctagggatgggccagttcagcacc
tcgccatttggtaagatgacttttgagacggcaaccaagtttattgtggaagcagcttct
catggagagtctgacacactggacggcccttcggcaagcgtctgtctggggaaacctgtt
aaggtggggacgggttcctttggcttgctgcagaatttttccctggagcaacctgttgcg
atgtaa
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integrated database retrieval system
