KEGG   Oryza sativa japonica (Japanese rice): 9270554
Entry
9270554           CDS       T01015                                 
Name
(RefSeq) transcription elongation factor SPT6 homolog isoform X2
  KO
K11292  transcription elongation factor SPT6
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    9270554
   03036 Chromosome and associated proteins [BR:osa03036]
    9270554
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     9270554
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    Other Histone chaperones and regulators
     9270554
SSDB
Motif
Pfam: SH2_2 HHH_7 SPT6_acidic YqgF Spt6_S1 HTH_44 HHH_9 SH2 Tex_central_region Tex_N HHH_3
Other DBs
NCBI-GeneID: 9270554
NCBI-ProteinID: XP_015638707
UniProt: B9FKX6
LinkDB
Position
5:join(24416675..24416708,24416824..24416925,24417288..24417417,24417504..24417588,24417668..24417809,24417905..24418037,24418136..24418397,24418474..24418662,24418739..24418864,24418952..24419338,24419431..24419541,24419772..24420566,24421257..24421398,24421493..24422661,24422752..24422961,24423153..24423621,24424180..24424607)
AA seq 1637 aa
MGGRTVLSDEEDEIEEEEEEENPRPSRRGRDNMDRDDDDDEEDEEDEGQDEYEKDGFIVD
DADEEEEEEDERESDDERRKKKRKKKKKRESEGFMLDEDDYELLQDNNITGIQRPKPGNK
FKRLKKAGRESEMDERSGFSDDDGSGKRRTAEERVQYSLFGDHQDASIEEDIVEEDQQAD
EDEDGDPEDEMAGFIVDEDEIDANGQVVKRKKGKARPRRPAAGVSSSALQEAHDIFGDVD
ELLALRKQELERDAANSGELRGNRLEDEFEPFILAEKYMTPKDEQIRENDVPERIQLSEE
LTGYPPTDTTMIEEESVWIHSQLTGDGFLSFFNNEHVNKDIDQKDIASVLTMLHVNKFEI
PFIAMYRKENCPSLLKDLDANEQTNEEHSDEEDQRKMMWHKMLWAVQTLDKKWLLLQKRK
VALEMYYDKRFDDENRRIDDVTRQALNRQLYSSIIEALKDAKSEKEVEDVDAKFNLHFPP
GEVEEEGQFKRPKRKSLYSICHKAGLWQVANQFGRSAEQLGHHLTLTKIPEAGELDSGKD
SPEEVAANFTCAMFETPQDVLRGARHMAAVEIGCEPIVRKHIRSIFMNKAVVSTCPTAEG
NLIIDPYHQLSGVKWLRDKPLNKFVDAQWLLIQKAEEEKLLKVTIKLPEDAKKELMSEAR
ENYLSDCVSKSAQLWDEQRKMILDDAFFNFLLPSMEKEARSLLTAKAKNWLNMEYGKQLW
NKVSVAPWKKKDADKKDSDIDLDDESELRVMACCWGPGKPATTFVMLDSSGELVDVLYAG
SISIRSQGVAEQQRKKNDQQRVLKFMTDHQPHVVCVGASNYNCRQLKDDIYEVIFKIVED
HPRDVNPQMENFSIVYGDESVPRLYENSRISSDQLPGQSGIVKRAVALGRYLQNPLAMAA
TLCGPGKEILSWKLHPLEQFLTPDEKYEVVEQIMVDATNQIGFDVNLAASHEWHFSTLQF
VAGLGPRKASALQKELLREGSIFSRKDLVKPLGRKVFMNASGFLRVRRSGGAAASAQIID
LLEDTRIHPESYALAKTLAKDVFAEEAPHEANEMDDDEQEMAIEHVREKPRYLKSLDIRE
YMKSMPEEFHNKEQTLKDIKWELLCGFPDWRTPYAEPTPDEEFWMLSGETEDTISDGRIV
QVTVRSIQDNRIICTFDSGLKAIVMADNYSDEGFDLETLQLHEGDVLTGKIKNVNKNRFM
VYLTCKASELRRRPLSRGNHDPYNHEQDMTSQNEQDKLRKQKELAKKHFKPRMIVHPHFQ
NLTAEEAMQFLSDKEPGEKVIRPSSRGPSFLTLTLKIFDGVLAHKEITEGGKDHKDITSL
LRLGKTLTIDNETFEDLDEVIDRYVDPLVGHLKSMLLYRKFKKGSKSEVDEMLRAEKSEN
PMRIVYCFGISHEHPGTFILSYIRSTNPHHEYIGLYPKGFRFRKRDFDNIDRLVSYFQKH
IDKPPPDAGPSMRNVAAMVPMKSSGWGNGGGTGGGNDGWRGDGNNDRDRPFSGRSGGRFD
SRNSSGGRGRGRGRGRGNFGSDDGGGGGWSGGGGGGGNSGGWTDNIGSGGGGWGTGGGSS
WAGGGDGGSGGGDSNRGGGGGWGTPAGGSDGGGGGWGAAPGGSNDAPGWGSGKKAVPAQD
GGSGWGASAGGGSGGWN
NT seq 4914 nt   +upstreamnt  +downstreamnt
atgggtggtcgcacggtgctctccgacgaggaagatgaaatcgaggaggaagaggaggag
gagaatccgcggccttcgcggagaggaagggacaatatggatcgggacgatgatgatgac
gaggaggacgaagaagacgagggtcaggacgaatatgagaaggatggcttcatagtagat
gatgcagatgaggaagaggaggaggaggatgagagggaaagtgatgatgagaggcggaag
aagaagaggaaaaagaagaagaaaagggaatcagaagggttcatgctggatgaggatgac
tatgagttgcttcaggataataacatcactggcattcaacgtcctaagcctggaaacaaa
tttaagcgcttgaagaaggccggaagggaatctgaaatggatgagcgctctggcttttca
gatgatgatgggtcaggaaaaaggcgtactgctgaggaaagagtccagtactccttattt
ggcgaccatcaagatgcgtctattgaggaggacattgttgaggaggatcagcaggcagat
gaagatgaggatggtgatcctgaagatgaaatggcaggtttcattgtcgatgaagatgaa
attgatgcaaatggtcaagttgtaaaaaggaagaagggtaaagcaagaccacgccgaccg
gctgcaggggtatcatcatctgccttgcaagaggcccacgatatatttggtgatgttgat
gaactattagcactgagaaagcaagagcttgagagggatgctgctaattctggtgagttg
agaggaaacagacttgaagatgagtttgagccatttattctggctgagaagtatatgaca
ccgaaagatgaacaaataagagagaatgatgtacctgagaggatacagctgtctgaagaa
ctaactgggtatcctccaacggacaccacaatgatagaggaagaaagtgtatggatacat
agccaactgacgggtgatgggtttctgtcattctttaacaatgagcatgtgaacaaggac
attgaccagaaggacattgcaagtgtattgaccatgttacatgtcaacaaatttgaaatt
cccttcattgctatgtataggaaggagaattgcccgagtctgttaaaagatcttgatgcc
aatgaacagaccaatgaagaacatagtgatgaagaagatcaacgcaagatgatgtggcac
aagatgctttgggctgttcagacattggacaaaaagtggctgcttcttcagaagcgcaag
gttgctttggagatgtactatgataaaagatttgatgatgagaatcgaagaatagatgat
gtcacacgccaggcattaaaccgtcagctttatagctccattattgaagcactgaaggat
gcaaaatctgagaaagaggtggaggatgttgatgcaaagttcaatctgcatttccctcct
ggagaagttgaagaagaaggacaatttaagcggccaaaaaggaaatcattgtacagtatt
tgtcacaaggcagggttatggcaggttgcaaaccaatttggtcggagtgctgagcagtta
ggtcaccatctcacattgacgaagatacccgaagcaggagaacttgatagtgggaaagat
tctcctgaagaggttgctgcaaatttcacatgtgcaatgtttgaaacaccacaagatgtt
cttcggggcgccagacacatggcggcagttgagattgggtgtgagcctattgtaagaaag
catatccgtagcatcttcatgaataaagctgtggtctcaacatgcccgactgctgaagga
aatttaatcatagatccctatcatcaactatcaggtgttaagtggctgcgtgacaaacca
ttaaacaagtttgttgatgcacaatggctgcttattcagaaagcagaagaagaaaagctc
ctcaaggttactataaaactgccagaagatgcaaagaaagagctcatgtctgaggctcgt
gaaaattacttaagtgactgtgtcagcaaatctgcacaactgtgggatgagcaacggaag
atgattctggatgatgccttcttcaatttccttcttccatcaatggaaaaggaagctcga
tctctgttgacagcgaaagccaaaaattggcttaatatggaatacgggaagcaattgtgg
aacaaggtatctgtggctccttggaagaagaaggatgcagacaagaaggattctgatatt
gatctcgatgatgaatccgagttgagggttatggcctgttgctggggacctgggaagcca
gcaaccacttttgtaatgcttgactcatctggagaattggttgatgttctatatgcgggt
tctatcagtattagatctcaaggtgttgctgagcagcagcggaagaagaatgaccagcag
cgagttttgaagtttatgactgaccatcagcctcatgttgtatgtgtaggagcatcaaac
tataattgcagacaactcaaggatgacatttatgaggttatttttaaaattgtggaagat
catccaagagatgtgaacccacaaatggagaactttagcattgtttatggcgatgagtct
gtgcctcgcttgtatgagaactcacggatatcttcagatcaactgcctggccagtcaggt
attgtgaagcgggctgtggctcttggtcggtacctgcagaatccattggctatggctgca
acactctgcggacctggaaaagagatactttcatggaaactgcacccccttgagcagttc
cttactcctgatgagaaatatgaagttgttgagcaaattatggttgatgcaacaaatcaa
ataggtttcgacgttaatcttgctgctagccatgagtggcatttttcaactctacaattc
gttgctggtttggggccacgtaaagcttcagctctacagaaagaattgttacgagaggga
tccatttttagtcgcaaagatcttgtaaaacctctaggcaggaaagtattcatgaatgca
tctggctttttacgtgttcgccgtagtggtggagctgccgcgagtgctcaaatcattgat
ttacttgaggatacaaggatacatcctgagtcatatgcattagcaaaaactttggcaaag
gatgtatttgctgaggaagcaccacatgaagcaaatgaaatggacgatgatgagcaagag
atggcaattgagcatgtcagagaaaagccacgttatctgaaatcgctcgacattcgtgag
tacatgaagagtatgccagaagagttccataataaagagcaaacactgaaagatataaaa
tgggaactgttgtgcggtttccctgattggaggaccccctatgctgagccaactccagat
gaggaattctggatgctttctggggaaactgaggacaccatatcagatggaaggattgtt
caagttactgttcgtagtatacaagataaccgaatcatttgcaccttcgattctggtctg
aaagccatagttatggctgataactattctgatgagggctttgatctagaaactctgcag
ttacatgaaggtgatgtattaacgggcaaaattaagaatgtgaataaaaacaggttcatg
gtttacttaacatgcaaggcaagtgaattgaggagaagaccattgtccagaggtaatcat
gatccgtacaatcatgaacaagacatgacttctcagaatgaacaagataagcttcggaaa
cagaaagaactggcaaagaaacatttcaaaccccggatgattgtccatcctcactttcag
aacttgacagctgaagaagctatgcagttcttatctgacaaagaacctggtgagaaggtc
attcggcctagttctaggggaccatcatttctgacacttactctgaaaatttttgatggt
gtccttgcacacaaggagataactgaaggtggaaaggatcataaagatattacaagcttg
cttcgccttggaaaaacattgacaattgataatgaaacttttgaagatcttgatgaggtt
atagacaggtacgtggatccattggtaggccacctgaagagcatgcttttgtaccgcaaa
ttcaagaaaggatcaaaaagtgaggttgatgagatgttaagggctgagaaatcagagaat
cctatgagaatagtgtattgtttcggcatatctcatgagcatccaggcacatttatttta
tcttacattaggagtacaaatccacatcacgagtatattgggttatacccaaagggcttt
agatttcgtaagagggactttgacaatattgatcgcctagtgtcctatttccagaagcat
attgacaaaccaccacctgatgctggtccatcaatgcgaaatgttgctgcaatggtgcct
atgaaaagttcaggttggggtaatggtggtggcactggtggtggaaatgatggatggaga
ggagatggtaacaacgacagggatagacctttctctggaagatcaggaggcaggtttgat
tcaaggaacagctctggtggtcgtggacgtgggcgcgggcgtggtagaggtaactttggc
agtgatgatggtggcggcggaggttggagtggtggcggtggcggtggcggcaacagtggg
ggatggactgacaatattggaagtggcggaggtggatggggcacaggtggtggttcctcg
tgggctggtggtggcgacggaggttctggaggtggtgatagtaaccgtggtggtggtgga
ggctggggaacacccgctggtggttctgatggcggcggcggtggctggggagcagcaccc
ggtggatccaacgatgccccaggatggggcagcggcaaaaaggcggtcccagcacaggat
ggtggtagcgggtggggagcttccgccggcggcggcagcggtggctggaactag

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