Oryza sativa japonica (Japanese rice): 9270665
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Entry
9270665 CDS
T01015
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9270665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
9270665
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
9270665
mRNA degradation factors
5'-3' decay
Decapping complex
9270665
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
9270665
NCBI-ProteinID:
XP_015626732
UniProt:
B7EHZ0
Q6K5B7
LinkDB
All DBs
Position
2:complement(join(11322712..11324882,11325174..11325243,11325471..11325527,11328832..11328992,11329326..11329359))
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AA seq
830 aa
AA seq
DB search
MAAQPSSSASTGATKFDASQYAFFGNNAVEEVELGGLEDDDGVDAGFVGPGDEEYPSAYG
RDMFEDEGGGSFTGVDDLAGAFSKLTRSINEPTQSGIISHGGSISRQSSTPDWAQDSYWP
TQPIFGAEQGLDNESRWSQPPHLARFADSRLHRTSSSPQQDAQYNPNEHILGAMPYLLHR
TSSYPQQEPQYNHTEPIPVPKSSFISYPPSGAVSHSSPGQPHHMNMPSPPTSFQMPVSAQ
NELHHPQFPRGGMPPGPLGRNMAHLDSAGLSTNNLQQNALNSGPIRPNGAMLTPGLVQHN
LQRPNGLVPPQMLSRRPQHGMAPIQHSPPQFSQFHAQMLGPRHPPPQGRQMYNPQHSSQM
MSGFDANLAMPDLSDPRARAMLHHGVHGQHYLPQGFELASMRMDNGWPRFRSKYMSTAEI
ENIARMQQAATQINDPYIDDYYHQACLAKKSAGGQLKHHFCPTLIRDPSSCARSKDEPHA
YLQVDALGRLPFSSIRRPRPLLDVEQTSESSDDVTEKSASKTLDQEPMLAARITIEDGLC
LLLDVDDIDRLLQFSQQQDGGLQLRNRRQALLEQLAESLQLVDPLTPSNNGPLSPNDDLV
FLRIVSLPKGRKLLSRYLELVSSGSELARIACMAVFRHLRFIFGNLPSDSSAVETTTKLA
TAVSTCVVRLELSGLSACLAAIVCSSLQPPLRPLGHAAGDGASFIIKSVLDRATELLTDQ
HVASTYSMQNRALWQASFDAFFGLLTEYCMSKFDSVIHALQTQPAVAAVISREMPVELLR
ASLPHTNEYQRKQLLSFSQRTVPVNNHSSHGSNNGPMTSESIPSSESRKI
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcagccttcttcgtcggcgtcgacgggcgctaccaagtttgatgcatcgcag
tatgctttctttgggaacaacgcggtggaagaggttgagctaggtggattggaggatgat
gatggtgtcgatgctggttttgttggccctggtgatgaagaatacccttctgcttatgga
agggatatgtttgaggatgaaggtggaggttcatttactggtgttgatgatcttgctgga
gcattctcaaagttgaccagaagcatcaatgaaccaacacaatcgggcataattagtcat
gggggttcaatttctagacaaagttctactccggattgggcacaagattcatattggcct
acgcagcctatatttggagctgaacaagggctggataatgaaagccggtggtctcaacca
ccccatttagcccgctttgctgattctagactgcacagaacatcctcatcgccgcagcaa
gatgctcaatacaatcctaatgaacatattcttggagcaatgccatatctgttgcataga
acttcatcatacccacaacaagagcctcaatacaatcacacagaaccaattccggtacct
aaatcatcattcatttcgtaccctccatctggtgcagtatcccattcttcaccaggtcaa
ccacatcacatgaacatgccatctcctcccacttcattccaaatgcctgtatctgcacaa
aatgagttacaccatccccagtttcctcgtggtggtatgcctccagggccacttggtcgg
aacatggctcatttggattcagcaggtttatcaactaataatttgcaacagaatgctcta
aacagtgggccaattcgtccaaatggtgccatgcttacaccaggtttggtgcagcacaat
ctgcagcgtccaaatggattggtcccacctcaaatgctgtcacgccgtccacaacatgga
atggccccaattcaacactctccgccacaattctcacagttccatgctcagatgcttggt
cctcggcatcctccaccacaaggtcgtcagatgtacaatcctcagcattcatcacaaatg
atgagtggatttgatgcaaatttggcaatgcctgacttgagtgatccgagagcaagagca
atgctgcaccatggagtgcatggccagcattatctcccccaaggttttgagcttgccagt
atgaggatggataatgggtggccgcggttcagatccaagtacatgtccacggctgaaatt
gagaacattgcaaggatgcagcaagctgctactcagatcaatgatccgtacattgatgat
tactatcatcaagcctgtttagctaaaaagtcagcaggaggtcaactcaagcaccacttc
tgtccgaccttgattagagatccatcatcctgtgcacggagtaaagatgagccacatgca
tatctccaggttgatgctcttggaaggttaccattttcttccatccgcaggcctcgtccg
ctcctcgatgttgaacaaacctctgaatcaagtgatgacgttactgaaaaatctgcttca
aaaacacttgaccaagaaccaatgctggctgctaggatcacaattgaagatggcctttgc
ctactgcttgatgtagatgatattgatcgcttgctgcaatttagtcagcagcaagatggt
ggcttgcaactgagaaacaggagacaggccctccttgagcagctggcagaatcgctgcaa
ctagttgatccacttacacctagtaacaatggacctctctcaccaaatgatgatctggtg
tttctccgaatagtctctcttccgaagggccgcaagctactttctcgttaccttgaactt
gttagttctggcagtgagcttgctagaattgcttgcatggcagtcttccggcatctaaga
ttcatatttggaaatttgccatctgatagtagtgctgttgagacaacgacaaaacttgct
actgctgtatcaacctgtgttgttcggttggagttgagtggactaagtgcttgccttgca
gctattgtgtgttcttcgttgcaaccccctctgcgaccccttggacatgctgcaggtgat
ggggcttctttcatcataaagtctgtactggacagagcaacagagcttctcactgatcag
catgtggcctctacctacagcatgcaaaacagagctctatggcaagcatcatttgatgcc
ttctttgggctgcttacagagtattgcatgagtaaattcgatagtgtgattcatgcattg
caaacacaacctgctgtggcagcagttataagcagggaaatgccagttgaattgttgcgt
gccagccttcctcacacaaatgagtatcagcgaaaacagttgctcagtttttctcagcgc
acggtgcctgttaacaaccatagttctcatgggtccaataatggacctatgacatcagaa
tctatcccaagttcagaaagccggaaaatataa
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