Oryza sativa japonica (Japanese rice): 9271984
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Entry
9271984 CDS
T01015
Name
(RefSeq) autophagy-related protein 13A
KO
K08331
autophagy-related protein 13
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
9271984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
9271984
03029 Mitochondrial biogenesis [BR:
osa03029
]
9271984
Membrane trafficking [BR:
osa04131
]
Autophagy
Autophagosome formation proteins
ULK complex
9271984
Atg1 complex
9271984
Mitochondrial biogenesis [BR:
osa03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
9271984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
9271984
NCBI-ProteinID:
NP_001403715
LinkDB
All DBs
Position
2:complement(join(26399626..26399929,26400405..26400583,26401884..26403035))
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AA seq
544 aa
AA seq
DB search
MATLSDSAGGGGGGRAGAELMVPQFHLKALHAILAVRAPRPLAAAPAPAASFRRRDRWFH
LPLHAPPPPASAEHLPEPSPGEPLVVDVYLTPSGGGGGAEAVVERWTVSCEPWSAGARGG
GGAAASGEGLAVNRAYKRCITLLRSVYTALRLLPAYRVFRLLCASGQAYNYEMGFRVGSF
AAPFTRAEEAAMSTRRFAPVETQLGRLVVSVQYLPSLAAFNLEICSLAPAMLITDYVGSP
AADPMRAFPASLTEAASSAPAFPPRRPNSWAPSPAPWPYTPGQQAKFSPPPALYASPTPS
PPTFAGGYLQSRLSGETAPMIIPGGGRGPVHNRNMSDPVRGFMLPPPSPKNIRGDSGGHE
TPMETGRTGIRMADLYTNLPSVPKIKIKDSRDESGRFSGVFSSSGSPRLGFSRSSSRLSM
QDDTDDLDFPFAVDDVDTPDSRPGSSGGKDVGDQASSSSHKSQDAAVGYLVHMLKSARPL
RDSSNSPLTSRVESVEGGNVSSFMSRRTSDALEELESFKEIKENLLARSRSRMQESLDKS
LRHS
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctgtcggactccgcgggcggtggcggcggtggccgggcgggcgccgagctg
atggtgccgcagttccacctcaaggcgctgcacgccatcctcgccgtgcgcgcgccgcgg
ccgctcgcggccgcgcccgcgccggcggcgtcgttccggaggcgggacaggtggttccac
ctgccgctccacgcgccgccgccgccggcgtcggccgagcatctgccggagccgtccccc
ggggagccgctcgtggtggatgtctacctgaccccgtcgggcggcggtgggggagctgag
gcggtggtggagaggtggacggtgtcgtgcgagccgtggtcggccggggcgaggggcggc
ggcggcgccgccgcctccggggaggggctcgccgtgaaccgggcgtacaagcggtgcatc
acgctgctgaggtcggtgtacaccgcgctccgcctcctccccgcctaccgcgtcttccgc
ctgctgtgcgcatccggccaggcgtacaactacgagatgggcttccgcgtcggttccttc
gccgcgcccttcacccgcgccgaggaggcggccatgagcacccgccgcttcgcccccgtc
gagacccagctcggtcgcctcgtcgtctccgttcagtacctcccctccctcgccgccttc
aacctcgagatctgctccctcgcgcccgccatgctcatcaccgattacgtcggaagcccg
gcagctgatcccatgcgtgccttcccggcgtcgctcacggaggccgccagctcagcgccg
gccttcccgccgcggcgcccgaacagctgggcgccgtcacctgctccctggccgtatacg
cccgggcagcaggcgaaattctcgccgccaccggcattgtacgcgtctcccacgccgtct
cctcccacgtttgcgggtggctacctgcaatcgcggctgagcggggagactgcgccgatg
atcataccgggtggtgggagaggccccgttcacaatcggaacatgtcggatcccgtcagg
gggttcatgctacctccaccttcaccgaagaacatcagaggcgactctggggggcatgag
acaccgatggagacaggccggacagggatccggatggctgatctctacactaatttgcct
tctgttcctaagattaagattaaggatagtagggatgaatctggcagattctcaggtgtt
ttttcctctagtggttccccacggcttgggttttcaagaagttcaagcagattgtcaatg
caggatgatactgatgatttagattttccttttgcggtggatgatgttgatacacctgat
tcccgaccagggagcagtggtggaaaggatgtgggggatcaagcgagctcatcatcccat
aaatcacaggatgctgctgtgggttatcttgtccacatgctgaagtctgcgcggccgctg
cgagactctagcaattcacctcttacatcaagggttgaatctgttgaaggaggtaatgtc
agttctttcatgtcccgtaggacatctgatgcgctcgaggagcttgaatcttttaaagaa
ataaaggagaacctgcttgcccgtagtagatcaaggatgcaagagtcattggataaatcc
ttgcgccattcttaa
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