Oryza sativa japonica (Japanese rice): 9272009
Help
Entry
9272009 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
9272009
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
9272009
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
9272009
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Roquin_1_2-like_ROQ
Motif
Other DBs
NCBI-GeneID:
9272009
NCBI-ProteinID:
XP_015629837
UniProt:
Q10CF3
A0A8J8YK26
LinkDB
All DBs
Position
3:complement(join(33541996..33542103,33542232..33542301,33542408..33542598,33543056..33543151,33544059..33544165,33544515..33544557,33544851..33544940,33545070..33545141,33547438..33547653))
Genome browser
AA seq
330 aa
AA seq
DB search
MANLPPSLSIGAASFAAPSPPPPSPGASSSSSAAAAAAPGAAKDRKMASAEQLVLDLCDP
ELRENALLDLSKKREIFQDLAPLLWHSYGTIAALLQEIVSIYPSLSPPTLSPGASNRVCN
ALALLQCVASHSDTRIPFLNAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDS
EVIGFLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVASV
LSQMVQALADQPSPRLLKHIIRCYLRLSENSRACTALNSCLPNALKDGTLNNFLQDDHVT
RRWLQQLLHNMTMAGMGGAPHGGLDHIMGM
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatctgccgccgtcgctctccatcggcgccgcctccttcgccgcgccctcgccc
ccgccgccctcgcctggcgcctcctcgtcgtcgtcggcggcggcggcggcggctccgggg
gccgccaaggaccggaagatggcgtccgcggagcagctcgtgctcgacctctgcgacccc
gagctgcgggagaacgccctcctcgacctctccaagaagcgagagatttttcaggatctt
gctccactcctgtggcactcttatggaacaattgctgcactactccaggagattgtgtca
atctatccatcactttcacccccaacattatctccaggggcttcaaaccgtgtctgcaat
gcacttgcacttcttcagtgtgttgcctcacacagtgacacaaggattcctttcttgaat
gctcacatcccactgtatctgtaccctttcttgaatactactagcaagacaaggcctttt
gagtacttgaggcttaccagcttgggtgtcattggcgcacttgtgaaggttgatgattct
gaagtcattgggtttctgctgcaaactgaaataattcctctgtgtctccgtactatggag
atgggcagtgaactttcgaaaacggttgccacctttattgttcaaaagattctgcttgat
gatgttgggcttcgctacatatgtgctactgctgaacgtttctttgccgtagccagtgtt
ctatcacagatggttcaggcacttgctgatcaaccttctccaagactgctgaagcacata
attcgctgctacctcaggctgtcagaaaattccagggcatgtaccgcgctgaacagctgc
ctccccaacgcgctgaaagatggaaccctcaacaacttcctccaggatgatcatgtcaca
aggcgttggctccagcagctgctgcacaacatgactatggccggcatgggaggagctcct
catggaggccttgatcacatcatggggatgtga
DBGET
integrated database retrieval system
