Oryza sativa japonica (Japanese rice): 9272454
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Entry
9272454 CDS
T01015
Name
(RefSeq) autophagy-related protein 13B
KO
K08331
autophagy-related protein 13
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
9272454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
9272454
03029 Mitochondrial biogenesis [BR:
osa03029
]
9272454
Membrane trafficking [BR:
osa04131
]
Autophagy
Autophagosome formation proteins
ULK complex
9272454
Atg1 complex
9272454
Mitochondrial biogenesis [BR:
osa03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
9272454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG13
Motif
Other DBs
NCBI-GeneID:
9272454
NCBI-ProteinID:
XP_015617171
UniProt:
Q53PN1
A0A8J8Y9W5
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Position
11:complement(join(3074717..3075071,3076418..3076569,3076713..3078011))
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AA seq
601 aa
AA seq
DB search
MAAAAEPPMVEQVITEFFAKSLHIILESRSPYESSRNFTRPSPPSSPLSGSQPRDRWFNL
ALRDCPAVLENFDLWRQSNLEPLVIDIVLLCRDSTSNTAAGSGKIIERWVIQYEARKSGG
GNGNGSKNNGRKSRNSSAEDHSLYRATYQGSTVLLRSLHLLVRLLPAYSLFRELNSSGRI
RPLNLSHKISSFVEPFTRAEDAEMKHYAFAPIETLFGRLSLSVSYVPVLEVVAASEPTSP
MPPEIITDYVGSPTTDFLKKFNSLPSAGIAPACAAMTRRHSWSIEHGAGTSVSPSPSPTK
AQSRGSPQLGVPLHVSLKTCSHPQNASSSGQKKYTPFEECYPSPPLSPSPSQSPSANYPK
NPLFRYESAPVTIPTLKSGGGGGSGLPPSPCSKGKHQFSSHNDNLAHSPDHNSNVRKDLV
RLGEFEKDMALQKVLSYSKYDLGYFHGLKLTRTSSKLFIMDELDEHELVFAWEDRDTIID
QLNRADISDREEQKNQDAGGSSTRSPAAAIGALVHLLKTAPSLREGLQSDAAAVVPQEPS
SVQKVVTEEHGSIASSSTPVTATDALEELKKYREVKESILNRGKTQVSGTNLGEKLTDGE
P
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggctgctgccgcggagccacccatggtggagcaagtgatcaccgagtttttcgccaag
agcctccacatcatactggagtcgcgctctccgtacgagtcgtcgcgcaacttcacgcgg
ccctcgccaccgtcctcgccgctgtccgggagccagccacgcgaccggtggttcaacctt
gcgctccgggactgcccggctgtgctcgagaactttgacctgtggcggcagagcaacctt
gagccgttggtcattgacattgtcctcttatgccgggacagcaccagcaacacagctgct
gggagtgggaagataatagagaggtgggtgatacagtatgaagctcgcaagtctggcggt
ggcaatggtaatggcagcaagaacaatggcaggaagtctaggaacagctcggctgaggat
catagcttgtacagggctacctaccagggatcgacagtgttactccggtcattgcatctg
ctcgtcaggctcttgccagcatacagtctcttcagggaactgaactcatctgggagaatc
cgtcctctcaacctgtcacacaagatatcttcatttgttgagccattcacccgggcagag
gatgcagagatgaaacactatgcatttgctccaattgaaactctgtttggccgattgagc
ttgtcagtttcttatgtgccagtgttggaggtggtggcagcttcagaacctacatcacca
atgccaccagagatcataacggattacgttgggagccccacaactgactttctaaagaaa
ttcaattccctcccttcagctggcattgcacctgcatgtgctgcaatgaccaggaggcac
agttggagtattgagcatggagctggaacgtcagtgtcgccatctccttctcccactaag
gcacaatcccgtggaagcccacagctaggcgttcctctgcatgtttctctaaaaacatgc
tcacatccacaaaatgcatcatcctctgggcagaagaaatatacaccatttgaagaatgc
tatccatcaccaccattgtcaccatcaccatcccaatccccttcagctaactaccctaaa
aaccctttgttccgatatgagagtgcaccagttactattcccacattgaagtcaggcgga
ggaggaggtagcgggttgcctccttctccatgttcgaagggtaagcaccagttctcatct
cacaatgacaacctggcacattcccctgatcataactcaaatgtaaggaaggatctagtc
aggttgggtgaatttgaaaaggacatggccttgcaaaaggtattatcttacagtaaatat
gatttgggatactttcatggactgaaattgactcggacatcaagtaaactttttattatg
gatgaactggatgaacatgaattggtttttgcatgggaagatagagacaccataattgat
cagcttaacagggctgatatctcagacagggaggaacagaagaaccaagatgctggtggc
tcgtccacaaggtctccagctgcagccattggtgctcttgtgcatctgctgaagactgca
ccaagcctcagagaaggcctacagtcagatgcagctgctgtggttcctcaagaaccttcg
tcagttcagaaggtcgtgactgaggaacatggcagcatcgcatcaagttctacaccggtg
acggcaactgacgcccttgaggagctgaagaaatacagggaggttaaagaatcaatacta
aatcgcggcaaaacacaggtcagcggcaccaatctaggagagaaactcacagatggagaa
ccttag
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