KEGG   Oceaniferula spumae: NT6N_25050
Entry
NT6N_25050        CDS       T11191                                 
Symbol
ligA
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
osu  Oceaniferula spumae
Pathway
osu03030  DNA replication
osu03410  Base excision repair
osu03420  Nucleotide excision repair
osu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:osu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    NT6N_25050 (ligA)
   03410 Base excision repair
    NT6N_25050 (ligA)
   03420 Nucleotide excision repair
    NT6N_25050 (ligA)
   03430 Mismatch repair
    NT6N_25050 (ligA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osu03032]
    NT6N_25050 (ligA)
   03400 DNA repair and recombination proteins [BR:osu03400]
    NT6N_25050 (ligA)
Enzymes [BR:osu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     NT6N_25050 (ligA)
DNA replication proteins [BR:osu03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     NT6N_25050 (ligA)
DNA repair and recombination proteins [BR:osu03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     NT6N_25050 (ligA)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     NT6N_25050 (ligA)
   MMR (mismatch excision repair)
    DNA ligase
     NT6N_25050 (ligA)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      NT6N_25050 (ligA)
SSDB
Motif
Pfam: DNA_ligase_aden OB_DNA_ligase BRCT DNA_ligase_ZBD HHH_2 PTCB-BRCT Nlig-Ia BRCT_2 E1-E2_ATPase zf-RING_11
Other DBs
NCBI-ProteinID: BDS07465
UniProt: A0AAT9FN75
LinkDB
Position
complement(2890557..2893013)
AA seq 818 aa
MHATPPGPPAIYETQSATGNPTTRNNTTPLSPTGCGEFFLSAFVHFAFGLSSSRTTITAM
DDLFSTPEARIKQLTTELEHHNQLYYQEAEPEITDAEYDALMGELKQLEAAHPDLALPDS
PTQRVGGAPLEGFEQIQHLVPMLSIEDIHELKDEERSEIEKLSDEEPRSGENSLVRLYRF
LQLQGLLKSVPSALALYDWFDRFQRSLGHSDVRLTIEPKIDGVAVSCVYRDGVLDYAVTR
GDGTTGDDITQNIKTIKSIPLRLPQGAPDLFEVRGEVFMPNEAFAKLNQQRDEAGEPAFV
NPRNATAGTLKQLDPKLVETRPLDCIFHSYGRVDDAPYSTVSEFQNTLKEYGLKCSHWFH
QPSTMEELLDCIIKLDQDRHDFPYATDGAVIKVDDLALHAQLGATSKHPKWACAYKFLPE
QKETLLKDITIQVGRTGVLTPVAELDPVFVSGTTVSRATLHNQDEIDRKDVRIGDTVIIE
KAGEIIPAVVKVITTKRPPNSEPFNLFNYVHGKCPSCAGPIEQEEGFVAWRCVNFACPAQ
AVTRIKHFASRKALDIDGLGTAVAEKLVENQIVSTTLDLFELEADSLADLLLDPAKLESG
DSKPRRLGEKKAAVITSSLKKARTAPLSRWIYAMGIPHIGESASREIARLHQNLSEVAVS
PILKDLAELPDFEELSISKRKKENHPRLAAYQIESELGPVAAQHITTFFQSEGGQLVLDQ
LQKHGIDPTSDNYDPQKSVLEKSDSAIAGKTFVITGTLSKPRPEFKKIIEAEGGKVSGSI
SSKTDYLLAGEKAGSKRTKAEELGVNILDEAAFEQLLK
NT seq 2457 nt   +upstreamnt  +downstreamnt
atgcacgcgacaccgcctgggccgcccgcgatttacgaaacacaatccgctactggtaat
cccacaacccgcaataataccactcccctcagcccgaccggctgtggggagttttttctg
tcggccttcgtgcactttgcatttggcctgagttcgtcacgaactacaatcaccgccatg
gacgacctcttcagcactcccgaagcacggattaaacaactcaccactgagctggagcac
cataaccagttatactaccaagaggccgaaccggaaatcaccgacgccgagtatgatgct
ctcatgggggagttgaaacagctcgaagccgctcaccccgatctggccctaccagattcc
ccaacccaacgtgtgggcggcgctcctctggaagggttcgagcaaattcagcatctggtg
ccgatgctttccattgaggatatccatgagctaaaagacgaggaacggtctgaaattgaa
aaactatctgacgaagagccacgctcaggcgaaaattctttagttcgtctttataggttc
ctgcaattacaaggtctattaaaatcagtaccttcagctttggcattatacgattggttt
gatcgtttccagcgctcactcggccactccgatgtccgactgacgatcgagccgaagatc
gacggcgttgctgtttcctgtgtttatcgcgatggggtgctcgactacgccgtcacccga
ggcgatggcaccactggtgatgacatcacccagaacatcaagaccatcaaatccatccca
ctacgtctaccgcagggagcgccggatctattcgaagtccgcggcgaggtcttcatgcct
aacgaagccttcgctaaactcaaccaacagcgcgatgaagcgggtgaaccggcctttgtc
aatccacgcaacgccaccgccggaacgctcaagcagctcgatcccaaactggtggaaacc
cgcccgctcgactgcattttccactcctacggaagagtcgatgacgcaccctacagcacc
gttagcgagttccaaaatacactcaaagaatacggcctgaagtgcagccactggttccac
caaccatcaaccatggaggagctgttagactgcatcatcaaactcgatcaagatcgtcac
gacttcccttacgccaccgatggcgccgtcattaaagtcgacgatcttgctctacacgct
cagctcggggccacatccaagcaccctaagtgggcctgcgcttacaaatttctacccgag
caaaaggaaaccttgctcaaggatatcaccatccaggtaggtcgaaccggtgtcctgaca
ccggttgccgaactcgatcccgtctttgtttccggaactaccgtctctcgtgccaccttg
cacaatcaggatgaaatcgaccgcaaagacgtccgcataggcgataccgtgatcatcgaa
aaagccggcgaaatcatccctgctgtggtgaaagtgatcactaccaaacgcccgcctaac
agcgaaccgttcaatcttttcaactacgttcatggcaagtgcccgtcgtgcgccggcccc
atcgagcaagaggaaggatttgttgcctggcgctgtgtcaactttgcctgcccagctcag
gcggtcacccgaatcaaacacttcgcatcgcgcaaggcactggatatcgatggccttggc
accgcagttgcagagaagctcgtcgaaaatcaaattgtcagcaccacgctcgatctgttc
gagctagaagccgactcactcgcagatctgctgttagatcccgccaagttagaatcaggc
gatagtaaaccgcgccgccttggcgaaaaaaaggcagctgtgatcaccagctccctgaaa
aaagcacgcaccgcccctctctctcgctggatttatgccatgggcattccccacattgga
gagtccgcctctcgtgagattgcgcgcctgcatcagaacctcagtgaagttgccgtttct
cctattttgaaagacctggccgagcttccggattttgaagagctctctatttccaagcga
aaaaaagaaaatcatcctcgtctggctgcctatcagatcgagtcagagctggggccggta
gctgcccagcacatcaccaccttcttccaaagtgagggtgggcaactcgtgttagatcaa
cttcaaaaacacggtattgatccgacatcggataattacgatccacagaaatctgtcttg
gagaaatccgactcagccatcgccggcaaaacctttgtcatcaccggcacactttccaag
ccccgcccagagttcaaaaaaatcatcgaggcggagggaggaaaagtttccggctccatt
tccagtaaaactgactatctcttggcaggagaaaaagctggctcgaaacgcaccaaggct
gaggaacttggggtgaacattctggacgaggcagcttttgagcagcttcttaagtag

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