Ostreococcus tauri: OT_ostta11g01600
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Entry
OT_ostta11g01600 CDS
T01358
Name
(RefSeq) DNA ligase, ATP-dependent, N-terminal
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
ota
Ostreococcus tauri
Pathway
ota03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ota00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OT_ostta11g01600
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ota03400
]
OT_ostta11g01600
Enzymes [BR:
ota01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OT_ostta11g01600
DNA repair and recombination proteins [BR:
ota03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
OT_ostta11g01600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
DNA_ligase_A_C
BRCT_2
BRCT
LIG3_BRCT
RNA_ligase
PTCB-BRCT
Motif
Other DBs
NCBI-GeneID:
9832415
NCBI-ProteinID:
XP_003081974
OrcAE:
OT_ostta11g01600
UniProt:
A0A090MA71
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All DBs
Position
11:304601..307582
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AA seq
993 aa
AA seq
DB search
MKDAAVDDDDDDYDDDDGDIDDPSAARRERSMDASGGPRYASARDAPFRALARACERVQR
ERGRKKANAARRYAALDAFHDVCLVSTRDGTRCDAFDAYRLLIPTLDKERETYRLKHDAL
AKCVVSAFDMARASEDAKTLEDWKQKGGGNFPQAVREVLERGHLQGREGDADVRELTIGE
VNDTLDELAACESKHERAATLRKLFGKMDAVMVKWACAIILKETKLRMGDKAIMRHYHRD
AEDLFDWTSDLRRVCEDLPRRDVRLKRADINVGEGLINPQLALRKNTADAIMKTLRGRQF
IIETKFDGERIQLHKDGEIINYWTRNMNDFGPRGYDVMNGLFRHLPKRCILDGELLVWNK
LRETWHPFGAIKTLIKAANLRKSKDEVFPLSNDTDDRDDGDDIAGYDPKSSKYEWYQEYM
KKLTYGDLELVYVPFDILYIGDESVRHLQLVERHAKLREHVHPVSAMCGNIKARILLATP
DCEFSKIGSTKQDIERALLEAIEAGDEGLVIKDLNSEWIPGDRSGNWMKIKPDYCKSEDL
DVLLIGGYYGAGELRGGKISQFLVGIIESTNDPTSAHGIKIMSFCKVGTGISATELDDLR
NRLGDYMHREKPREMDYNVTDAYSERPDVWIWPPQRSVVVRVKGDIRCIRSMTYATGYSL
RFPRVTGIRYDKTWSDILTNAELKQIIEEDRPNIAMDMGEGHMNSRKRTRAAALTTLLPA
HLMPVDVSGVVPESEVFKSLQIHIVNCESREQKQELFKAIIARGGRTSEMWHSDVTHSVA
ANRDGAKFIAASHHGDVYTIDWLKQCIQQNRIVTPRPRHRLNLATSTWYGSNIMDRYGDD
HAIPCNEEDIRALLHQVGDQAKRWETSEVPAMVELTREYPNLLKSMKYCTFSECVFEIDD
SCDVQHNEWMSESEHFRLMLHEERFNVELRLRLFGGTMAPEGRSGTHIVRMNDDSVREEY
LDDGRVLVSNGWVTKRTRKQSPRMSPNLDIRSF
NT seq
2982 nt
NT seq
+upstream
nt +downstream
nt
atgaaggacgcggcggtggacgacgacgacgacgattacgacgacgacgacggcgatatc
gatgatccgagcgcggcgcgtcgggagcggtcgatggatgcgtcgggagggccgaggtac
gcgagcgcgcgagacgcgccgttccgagcgctcgcgcgcgcgtgcgaacgtgtgcaaaga
gaacgtgggcgtaagaaggcgaacgcggcgaggcggtacgcggcgctggatgcgtttcac
gacgtgtgcttggtgtcgacgagggatgggacgcgatgcgatgcgttcgacgcgtatcga
ttgttgataccgacgctggataaagagcgagagacgtatcggttgaaacacgacgcgttg
gccaagtgcgtggtgagcgcgttcgacatggcgcgagcgagcgaggacgcgaagacgctt
gaagactggaaacagaagggtggggggaacttcccgcaggctgtgcgagaggtcttggag
cgcggtcatcttcagggaagggagggcgacgcagacgtacgagagctcaccattggcgag
gtaaacgataccttggacgagttagcggcgtgcgagagcaaacacgagcgtgcggcgacg
ctcaggaagctgttcgggaagatggatgcggtgatggtgaagtgggcgtgcgcgatcatt
ctgaaggaaacaaagctgcgaatgggagacaaggcaattatgcgtcactaccacagagac
gcggaggatttgttcgattggacgagtgacttaagaagggtgtgcgaggatttaccgagg
cgagacgttcggttgaaacgcgcggatatcaacgtcggagagggtttgataaatcctcag
ttggcgctgaggaaaaacaccgccgacgccatcatgaagacgctcaggggccgacagttc
atcattgaaacgaaattcgatggagaacgcatccagcttcacaaagacggagaaatcatc
aactactggactcgtaacatgaatgatttcggaccacgcggctacgacgtgatgaacggc
ctttttcgccatctaccgaagcgatgtatcctcgacggcgaactgttggtgtggaacaag
cttcgagagacatggcatcctttcggagcgattaaaactttaatcaaggcggcgaacctg
cgcaagtcgaaagacgaggttttccccttgtccaacgacactgacgatcgtgacgacggg
gatgacatcgctggttatgacccgaagagctccaagtacgagtggtaccaagagtacatg
aagaaactaacgtacggcgatttggagctggtctatgtaccattcgacatcttgtatatt
ggagacgaaagcgttcggcatctccagctcgtcgagcgtcatgcgaaactcagggagcac
gttcacccggtatcggcgatgtgtggaaacattaaagctcgaattttacttgcgactccc
gactgtgagttttctaaaatcggctcaaccaagcaggacatcgagcgcgcattgcttgaa
gcgatcgaagccggtgacgaaggcttggtcatcaaagatctcaatagcgagtggattcct
ggtgatcgtagcggtaactggatgaaaattaaaccggactactgcaagagcgaggacttg
gacgtgcttctgatcggaggatactacggcgctggtgagttgcgtggaggtaaaatttct
caattcctcgttggtatcatcgaatctacgaacgacccaacgagcgctcacggaatcaag
ataatgagcttttgcaaggtcggcaccggcatcagcgccacagagttggatgaccttaga
aaccgtttgggtgactacatgcatagagaaaagccacgagagatggattacaacgtcaca
gacgcctacagcgaaagacccgacgtatggatttggccaccgcagagatctgttgtcgtg
agagtaaagggtgatattcgatgcattcgttccatgacgtacgcgactggatacagcttg
cgctttccacgagtgactggcattcgatacgataaaacgtggtcagacatactcacaaat
gcagagctcaaacaaataattgaagaagacagaccaaacatcgcgatggatatgggcgag
ggacacatgaattctcggaaacgcacgcgcgcagcggcgctcacgacgttacttccggcc
catctgatgcctgttgatgtctctggtgttgtgccggaatctgaagtattcaaaagcttg
cagatacatatagtgaattgcgaaagtcgagagcaaaagcaggaattgttcaaagcaatc
atcgctcgcggtggacgcacgagcgagatgtggcactccgacgtgacgcatagtgtggct
gcgaacagggacggtgcaaaattcatcgccgcaagccaccatggcgacgtgtacacaatc
gattggctgaagcagtgcatccagcagaaccgtatcgtgacgccgcgaccacgacatcgc
ttaaatctcgcgacgtcgacttggtacggctctaatataatggataggtatggagacgac
cacgccattccgtgcaacgaagaggacatacgcgcacttcttcaccaagttggtgatcaa
gcgaagcgttgggaaacatcggaggtcccggccatggtcgaattaactcgcgagtacccg
aacttacttaagagtatgaagtactgtacgtttagcgagtgcgtgtttgaaatcgacgat
tcgtgcgatgttcaacacaacgaatggatgtctgaaagcgaacactttcgcctcatgttg
catgaggagcgattcaacgtcgaactacgtctgcgactgttcggaggaacgatggcgccg
gagggtcgtagcggaacgcacatagtgcgtatgaacgatgattccgtgcgtgaagagtat
ttggatgacgggcgcgtgcttgtatcgaacggatgggtaacaaagcgcacgcgtaaacaa
tctcctcgtatgagcccaaatttagacattagaagtttctag
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integrated database retrieval system
