Onychostruthus taczanowskii (white-rumped snowfinch): 121333231
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Entry
121333231 CDS
T07590
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
otc
Onychostruthus taczanowskii (white-rumped snowfinch)
Brite
KEGG Orthology (KO) [BR:
otc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otc03036
]
121333231 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
otc03400
]
121333231 (SMCHD1)
Chromosome and associated proteins [BR:
otc03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
121333231 (SMCHD1)
DNA repair and recombination proteins [BR:
otc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
121333231 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
SMC_hinge
HATPase_c_3
HATPase_c
Big_1
C9orf72-like
Motif
Other DBs
NCBI-GeneID:
121333231
NCBI-ProteinID:
XP_041255325
LinkDB
All DBs
Position
Unknown
AA seq
2031 aa
AA seq
DB search
MAAAAGGSRTPRRPALLTPRGNGDRTVFLFDRRREQADPDEKVLSYGRDNYRAFRSAVCQ
AFGISSDETFVITTTNRKEITEDNFSELVHDGVTLYLLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSQNTGIRSIQIKLLFDDSQGKPAVAV
IDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPAASQDVHELVLSKEDFEKKEKNKEAIYTGFIRNRKPSDSTHITSDD
ERFLHNLILEERDKESFTAVIITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPTGNEA
NAVTKEISPFNNIDIQISMFEKGKVPKIINLREIKDDMQTLYINTAADSFEFKAHVEEEG
IVEGIIRYHPFLYDKETYPDDPCFPSRLNDDDDDDCLLVEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITVRSDISSKRMQSPWTMYAA
IEWDGKTYKTGQLVKTTKTHPIFYGSIEKFYLYGDHDGDIFATGGEVQIALEPQALYAET
KIIPISKLDRTVSDKVVKKYIEDEMARLPDKLSVTWPEGDELLPNETRFAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISHISQHGGKWPYWFKKMEN
LQKLGNYSLKLQVVLNESNADTYAGRPLPSKVFKFTIVEGKPEKFLVGLLELPFRIGVPF
NIPLELQDEFGHATHLTNHIRPILEASGLTLKHEGIPVAAKCVIKGVTAKGSVNSCQGKN
FNLKITLPGLKEDTQVIKIRLQPGPPCQLKVKPDSEILKIENGTAFPFQVEVLDESGNIT
AQPDLIVHCKFLGASDLPVYSVDCSNGGTNILTGPVIHVQNIKKDQMLKARFEVLNCINV
SPVEKIIKLLPSSHVARLQVLSMNGQKVLQIKHQDEISCVAGQVMNKLVFQMYDEAEREV
PITAAAAEKIKVNWTPKIDRELLMQGLLPDLKVPTSVKDVRYCLITYLDEHVSLESAFTV
RPVPDEPKHIKCKLKGSNTLQMGEELQSEIDVMITDQFGNHVQTVTSACVNSLGVSGPGL
DKSKLKITWQESTQTMKVKGIRYKPCLLGSKELCFAWREFSDFVRVNLVAGSPAKLQFVD
WPELEKPVAVINGRELQRPLIVQLCDQWGNPSPEPNVKISLTKSNNLKLVPSNQQHKTDD
AGRANLGVFSIHAPRGEHILQIKASYNKAMLECLVMTINVLPDPEKPVCLNVKHDKSPSF
PAGGTFPDFMVSVLSENDTIIKNINPARISMKMWEAQSSRVRTPVDVTTFSCSKVKDDKE
DGFFYFRDKVVPERVGTYVIQFTFAMDKTNMLNSEQIIIEVVPNDPVRLLPDSLPATPAV
SNVRALTSRTLVKDLYLHLMDEYNNHTGLDLVGRIIAKIKSPNEEDIEIPQFQGKVSTVE
FPLESGSAEINLVLAEDSPGRDSTEYILVFEPRLPALKKPLEPYCLSFMFYNDSKKQQLM
ATLTREKDQLSKSIDLYRKMFDTTNQLVAEIKCQVKEAETREALLKNELKKHQIELPETN
TLQYVDSLLKKKMLEQEGVMKQPRRTCTLPNYPKGSQDILGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWTRPLPHMRNGRTFFRP
IGNPVFARDLLTFPDNVEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTISGQIDLLQQYRAAVIKFDNVN
KDLDLHLQSLNTPEMQKKKQELAEQEKSLKLVKQKLGMTPALSDKGAESLLQPIMLDISD
TPIPPKRMRRDTVKKLYSSEEWISSPAKQQQQQVLQMAPSELNGTPRKRKA
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atggcagcagcggcgggaggcagccgcacacctcgcaggccggcgctgctgacccctcgc
ggcaacggggaccgcaccgtgttcctcttcgaccggcgccgggagcaggcggacccggac
gagaaagtgctcagctacggcagggacaactaccgcgctttccgcagcgccgtctgccag
gcatttggcatatcttctgatgaaacctttgttatcaccacaacaaataggaaggaaatt
acagaagataacttcagcgagcttgttcacgatggagttactttatatttgctacagtca
gttgatcaaatgttgcttttggcaaccaaggaacgaatcgactttctgccccactacgac
acacttgtcaaaagtggcatgtacgagtactatgccagcgagggccaaaatcctttgcca
tttgcccttgctgaattgattgacaattctctgtcagctacatctcaaaatactggcatt
cggagtatacagataaaattgttgtttgatgattcccaaggaaaaccagctgttgctgtg
attgataatggaagtggaatgacttctaaacagcttaacaactgggctgtgtatagattg
tcaaagttcacaagacaaggtgactttgaaagtgatcattcaggatatgtgcgccctttg
ccagtgcctcgtagtttaaatagtgatatctcatattttggagttggaggcaagcaagca
gtgttcttcgtgggacagtctgccagaatgataagcaagcctgcagcatctcaggatgtt
catgaacttgtcctttctaaagaggattttgaaaagaaggagaaaaacaaagaagcaata
tatacaggattcattcgaaacagaaagccatctgattctactcacatcacaagtgatgat
gaaagatttcttcataatctaatattagaagaaagggataaagagagtttcacagcagtt
atcattacaggtgtacaaccagatcacatgcaatacttgaaaaactactttcatctttgg
acaaggcagctggcacatatctatcactattatatccatggaccaacaggaaatgaagct
aatgctgtaacaaaagaaataagccctttcaacaacatcgatattcagatttcaatgttt
gaaaagggaaaagtaccaaagattatcaatctgagggagatcaaagatgacatgcagaca
ttgtatataaacactgcagcagatagttttgagttcaaggcacatgttgaagaagaaggt
atagttgaaggcatcatccgataccatcccttcctttatgataaagaaacataccctgat
gatccatgttttccatcaagattaaatgatgatgatgacgatgactgtcttttagtagaa
aaaggtgccagaggaaaaaggcctatttttgagtgtttttggaatggaagattaatacca
tacacaactgtggaagattttgactggtgcgctcctccaaagaagagaggattggcacca
attgaatgctacaacagaatttctggtgcattgtttaccaatgataagttccaggtcagc
acaaacaaactcactttcatggatctggagctgaagctaaaggataagaatactctgttc
acaagaatcttcaatggacaggagcagcgaatgaaaattgacagagaatttgctctgtgg
ctcaaagactgtcatgaaaaatatgacaaacagataaaattcacagtctttaaaggaata
actgtacgtagtgacatatcatccaaaagaatgcagagcccttggacaatgtatgctgca
atagagtgggatggaaaaacatacaaaacaggacagctggtgaaaactactaagactcat
ccaatattctatggaagcattgagaaattttacttgtatggggaccatgatggggatata
tttgccactgggggagaggttcaaattgctttggagccacaggcattgtatgctgaaaca
aaaattattccaatctcaaaacttgacagaacagtgtctgacaaagttgttaaaaaatac
atagaggatgaaatggcaagacttcctgacaaattatcagtaacatggcctgaaggagat
gagttgttaccaaatgaaacaagatttgctggtacaccaataggagcattaagaatagaa
attttaaataaaaaaggggaagcaatgcaaaaacttccaggtacaagccacggaggttca
aagaaacttcttgttgaactcaaagttattttgcattcacctactgagaataaagaaata
atttctcatatcagtcagcatggaggcaagtggccatactggtttaaaaaaatggaaaat
cttcagaaacttggtaactactccttgaaactgcaagtagtgttgaatgaaagtaatgca
gacacttatgcaggaaggcctctgccatctaaagtatttaaatttactattgtagagggc
aaaccggagaaatttttggtgggtctcttggagcttccttttcgaattggagtacctttt
aatattcctttggaattgcaggatgaatttggtcatgcaacacacttgacaaatcacatt
agaccaattttggaagctagtggattaacactgaagcatgaaggcatacctgtggcagca
aagtgtgtcattaagggtgttactgctaaaggcagtgtaaatagttgccagggcaagaac
tttaatctgaagattactcttcctggtttgaaagaagatacacaagtcattaaaataaga
ttgcagcctggccctccttgtcaattgaaagtaaaaccagattcagaaattctaaagatt
gagaatggtacagcttttccctttcaggttgaagttctggatgaatcaggaaatataaca
gcgcagccagatttgattgttcactgtaagtttttaggtgcttcagaccttcccgtgtat
tctgtggactgcagtaatggaggaacaaacattttaactggcccagttatacatgtacag
aatatcaagaaagaccagatgttgaaagcaaggtttgaagtacttaattgcataaatgtg
tcaccagtcgaaaagattataaaacttcttcctagcagtcatgttgcaagactacaggtc
ttaagtatgaatggacaaaaagttcttcagattaaacatcaggatgaaatcagttgtgtt
gctggccaagtcatgaataaacttgtatttcaaatgtatgatgaagcagaaagggaagta
cccataactgcagctgctgcagaaaaaatcaaggtgaactggacacctaaaattgacaga
gagctgttgatgcagggattattacctgatctaaaagtaccgacttcagtaaaagatgta
cgttactgcctaattacttaccttgatgaacacgtgtctttggaaagtgcattcacagtc
agaccagttcctgatgaacccaaacacattaaatgtaaactaaaaggctcaaacactctg
cagatgggtgaagaactgcagagtgaaattgatgtaatgattacagatcagtttggaaat
cacgttcagacagtgacatctgcatgtgtaaattccctaggagtttctgggcctggactt
gataaatcaaagttgaaaataacttggcaggaaagtactcaaacaatgaaagtaaaaggt
attcgatacaaaccctgtttactcggaagcaaagaattgtgctttgcctggcgtgaattt
tctgactttgtcagagtgaatttagtagcaggatccccagctaaattgcagtttgtggat
tggccagagctagaaaagcctgttgcagtgattaatggtagagaattgcagaggcccctt
attgttcagttgtgtgatcagtggggaaatccatctcctgaacctaatgtcaaaatcagc
cttacaaagagtaacaacttaaagcttgttccttcaaaccagcaacataaaacagatgac
gctggtagggctaacctgggcgtttttagtattcacgcacctaggggagagcacatttta
cagattaaagcctcatacaacaaggctatgttagaatgtcttgtaatgacaataaatgtc
ctgcctgatcctgagaaacctgtctgcctgaatgttaaacatgacaaaagtccttctttt
ccagcaggaggtacctttcctgattttatggtcagtgttctttctgaaaatgacaccatt
attaaaaacattaatccagcacggatttctatgaaaatgtgggaagcacagagcagccgg
gttaggacaccagttgatgttacaacgtttagctgtagtaaagtgaaggatgataaggaa
gatggcttcttctacttcagggataaagtagttccagagagagtgggcacttatgtgatc
cagtttacctttgcaatggataagacaaatatgctcaacagtgagcagattataattgaa
gttgtacctaatgaccctgtacgcttgttacctgattctttaccagctactccagcagtt
tccaatgttcgagctcttaccagccgtacactggtcaaggatttatacctccatttaatg
gatgaatataacaaccacactggacttgatctggttggcagaataatagcaaaaattaaa
agccccaatgaagaagatatagagatcccgcagtttcaggggaaagtcagtacagtagag
tttccattggagagtggatcagctgaaattaatttagtgctggctgaagacagtcctgga
agagatagcactgaatatattcttgtctttgagccacgtctgccagctttgaaaaaacct
ttggaaccatattgtctctcatttatgttttacaatgattccaagaagcagcagctgatg
gcaacactgaccagggagaaagaccaattatctaagtccatagatctttacagaaagatg
tttgatactacgaatcagctcgtagctgaaataaaatgtcaggttaaagaagctgaaacg
cgagaagctctcctgaagaatgaactgaaaaagcaccaaattgaattaccagagacaaac
acacttcagtatgtagattctcttctgaaaaaaaagatgttggaacaagaaggagtaatg
aagcagccaaggagaacttgtacactcccaaactacccaaaaggtagccaggatattcta
ggcaagattgcacatttagctcaaattgaggataacgaagcagcaaaagtcatctcttgg
cacctggcaagtgacatggactgtgtagtcacactgaccacggaagctgcgcgttctatc
ttcgatgaaactcaaggtcgacagcaagtgttaccccttgattctatttacaagaagaca
cttccagattggaccagacctttacctcacatgagaaatggaagaaccttcttcaggcct
attggaaatcctgtatttgccagagatctgttaacatttccagataatgtagagcattgt
caaacagtgtttggtatgctcttgggtgatactatcattatagataacttggatgctgcc
aaccactacagaaaagaggttgtaaaaattacacactgccctaccttgctgactagggaa
ggagacaggattcgcagcaatggaaaatttggaggcctgcagaataaagctcctccaatg
gacaagctcagaggaatggtatttggagcaccaatgccaaaactttactctactatctct
ggacagatagatcttcttcagcaataccgtgcagcagtgattaaatttgataatgtgaat
aaggacctggatttacatttgcagtcactgaacactccagaaatgcaaaagaaaaaacag
gaacttgctgagcaagagaaaagcctcaagctagtaaaacaaaaattgggtatgactcct
gctttatcagataaaggtgctgaatcgttacttcagcctataatgttagatatatctgac
acccccattcctcccaaaagaatgagaagagacacagtgaaaaaattgtatagctcagaa
gaatggatctcctctcctgcaaagcagcagcaacagcaagtgctgcaaatggccccttca
gaacttaatggaactccacggaaaagaaaggcatag
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