Opitutus terrae: Oter_0004
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Entry
Oter_0004 CDS
T00689
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ote
Opitutus terrae
Pathway
ote03030
DNA replication
ote03410
Base excision repair
ote03420
Nucleotide excision repair
ote03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ote00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Oter_0004
03410 Base excision repair
Oter_0004
03420 Nucleotide excision repair
Oter_0004
03430 Mismatch repair
Oter_0004
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ote03032
]
Oter_0004
03400 DNA repair and recombination proteins [BR:
ote03400
]
Oter_0004
Enzymes [BR:
ote01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Oter_0004
DNA replication proteins [BR:
ote03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Oter_0004
DNA repair and recombination proteins [BR:
ote03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Oter_0004
NER (nucleotide excision repair)
GGR (global genome repair) factors
Oter_0004
MMR (mismatch excision repair)
DNA ligase
Oter_0004
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Oter_0004
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HHH_5
zf-NADH-PPase
zf-tcix
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ACB73296
UniProt:
B1ZWH2
LinkDB
All DBs
Position
complement(4567..6594)
Genome browser
AA seq
675 aa
AA seq
DB search
MTPVEAQSRIAELRAQVARHDELYHRRAQPQIGDFEYDALKRELAELEAAWPQFARGASP
TEQVGDDRTEGFQVYRHRERMMSLDNTYSETELREFHDRLVRELERDGLKFVIEPKIDGL
AVSITYEKGKLVRAVTRGNGIEGDDITTNALTIKSLPRELKRADGVPLPAVIEIRGEVFL
TTEEFLRINRQREEAGEPLYANPRNLAAGTIKQLDPREVAQRKLEVVLYGRGYVEPASAL
PETQAQFHGWVKAWGLPTVERFWTATGADEIWAAVQELDALRDTFAYATDGAVVKLDAVP
LQRRAGSTSKSPRWAMAYKFAPDRAETQLRAITVQVGRTGVLTPVAELDPVQLAGTTVSR
ATLHNRDEIARKDIRVGDFVYVEKAGEIIPAVIGVNPARRAPECVPYVFPEKCPECGTAV
VQLEGEVAVRCPNFSCPVQVRRRVQHFASKACVDIEGMGEAMVDVLVEKGWVHSVPDIYQ
LKRENLLTLGKSVEKSTDKLLEAIEASKRAELWRFIHGLGIPHAGAAAAKDLARTFGGLE
RLASARYEDFIREKASVIGGIGETMALAILAYFAEPRNRAVVDELVRVGVQPVVPNSGSA
LAGKTFVLTGTLPTLTRDEATAQIEAAGGKVSSGVSKKTSYVLAGEEAGSKLEKARALAV
PVIDEAEFLRLLSGG
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgaccccggtcgaggcccaatcgcggattgccgagttgcgcgcgcaggtcgcgcgacac
gatgaactctaccaccgccgcgcgcagccgcagatcggcgacttcgaatacgacgcgttg
aagcgcgagctcgccgagctcgaggcggcatggccgcagtttgcgcgcggcgcgtcgccg
acggagcaggtcggcgacgatcgcacggaagggtttcaagtttaccgccaccgcgagcgg
atgatgagcctggacaacacttactcggagaccgaactccgggagtttcacgaccgactg
gtgcgcgagctcgagcgcgacgggctgaagttcgtcatcgagccgaagatcgacggactg
gccgtgagcattacctacgagaagggaaaactcgtgcgcgcggtcacgcggggcaacggc
atcgaaggcgacgacatcacgacgaacgcgctcacgatcaagtcgctcccccgcgagctg
aaacgtgcggacggcgtgccgctgccggcggtgatcgagatccgaggcgaggtttttctg
acgaccgaagagtttctgcggatcaatcgtcaacgcgaggaagcgggcgagccactctat
gcgaacccacgcaatcttgctgcgggtacgatcaagcagctcgatccgcgcgaagtcgcg
cagcgcaaactcgaggtcgtgctttacggccgcggttatgtggagccggcgagcgcgctg
ccggagacgcaggcgcagtttcacggctgggtgaaggcgtggggattgccgacggtggag
aggttttggacggcgaccggcgccgacgaaatctgggcggcggtgcaggagctcgacgcg
ttgcgggacaccttcgcctacgcgacggatggcgcggtggtgaaactcgacgcggtgccg
ctgcagcgacgcgcgggctcgacgagcaaatcgccccgctgggcgatggcctacaagttc
gcgccggatcgggcggagacgcagctgcgcgcgatcacggtgcaggtgggccggaccggc
gtgctcacgccggtggcggagctcgatccggtgcaactcgcgggcacgacggtgtcgcgc
gcgacgctgcacaaccgtgacgagatcgcgcggaaggacattcgcgtcggggatttcgtg
tacgtcgagaaggcgggtgaaatcatcccggcggtgatcggcgtgaatccggcgcggcgc
gcgccggagtgcgtgccgtatgttttcccggagaaatgtcccgagtgcggcacggcggtg
gtacagctcgagggcgaggtggcggtgcggtgtccgaatttttcgtgcccggtgcaggtg
cggcgccgcgtgcagcatttcgcgtcgaaagcgtgcgtggacatcgaaggcatgggcgag
gcgatggtcgacgtgctggtggaaaaaggctgggtgcacagcgtgccggacatctaccag
ctgaaacgcgagaacctgctcacgctcgggaagagcgtggaaaaatccacggacaagctg
ctggaggcgatcgaggcgagcaaacgcgcggagctgtggcggttcatccatgggctcggg
attccgcacgccggcgccgcagcggcgaaggatttggcgcggacgtttggcggactcgag
cggctggcgagcgcgcgctacgaggatttcattcgcgagaaggcgtcggtgatcggcggg
attggcgagacgatggcgctcgcgatcctcgcgtatttcgccgagccgcggaatcgtgcc
gtggtggacgaactggtgcgcgtcggggtgcagccggtggtgccgaattcgggcagcgcg
ctcgcgggaaaaacctttgtgctgaccggcacgctgccgacgctgacgcgggacgaggcg
acggcgcagatcgaggccgccggcgggaaggtgagcagcggtgtgagcaagaaaaccagc
tacgtgctcgcgggcgaggaggccggatcgaagttggaaaaggcgcgcgcgctcgccgtg
ccggtgatcgatgaggcggagtttctgcggctgctgagcggcggctag
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