Orientia tsutsugamushi Boryong: OTBS_1717
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Entry
OTBS_1717 CDS
T00531
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ots
Orientia tsutsugamushi Boryong
Pathway
ots03030
DNA replication
ots03410
Base excision repair
ots03420
Nucleotide excision repair
ots03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ots00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OTBS_1717 (ligA)
03410 Base excision repair
OTBS_1717 (ligA)
03420 Nucleotide excision repair
OTBS_1717 (ligA)
03430 Mismatch repair
OTBS_1717 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ots03032
]
OTBS_1717 (ligA)
03400 DNA repair and recombination proteins [BR:
ots03400
]
OTBS_1717 (ligA)
Enzymes [BR:
ots01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OTBS_1717 (ligA)
DNA replication proteins [BR:
ots03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OTBS_1717 (ligA)
DNA repair and recombination proteins [BR:
ots03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OTBS_1717 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OTBS_1717 (ligA)
MMR (mismatch excision repair)
DNA ligase
OTBS_1717 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OTBS_1717 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
ASFV_360
Ogg-HhH
YdaT_toxin
DZR_2
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CAM80812
UniProt:
A5CEY0
LinkDB
All DBs
Position
1669002..1671098
Genome browser
AA seq
698 aa
AA seq
DB search
MNKLDISTINIEQLTSDHAKKIVDFLALELQKYDQAYYSDNNPLVTDAQYDVLKNLNNKI
VAKFPHLALVNDHSKKVGFTPSAQFSKVVHLKPMLSLANGFCVEDISNFITKIQNFLKID
HCPKIVCEYKIDGLSFNARYEYGVLTLASTRGDGQIGENITENLKTIQSFPQTLPITDKV
FEVRGEIYITNNDFRVLNIQQQKLGKALFSNPRNAAAGSIRQLDPAITAQRPLKYFVYAL
GEVTNHHFASTQFELLQKLSQLKFSVNTDYILSDNLHSMIEFYNNVATERNNLAFEIDGV
VYKVNDFALQERLGATSTSPRFAIAYKFPALIGRTKITNITLQVGKTGAVTPVALLIPIN
IAGVTISRATLHNKQEIESKDIRIGDYVFLHRAGDVIPKINGVDLSARDAQSSTRFIFPA
TCPSCNQNLVVNEGETVARCGNSLACPAQIYERICHFVSKDALNIDGLGRQRIRFLLDNK
YIVNIVDIFLLEENNKLLSSNKLEDIAGWGIKSVNKLFKNINQAKNVILDRFIYALAVKH
VGKYSAKLLAKEFKTAKNFIDQSLKLANNVTEIYEKLCNIEGLGVKTADQLKQFFMVSAN
VNLITKLVNILTIQDWQYHGDNLLLSNQTIVFTGTFATVSRSEIKVQAEKLGAKVGTQVS
NNTDLLVVGNKAGNKLQKAQQLGIKIINEEEWIKMVNE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgaataagctagatattagcacgattaatattgaacaattaacatcagatcatgctaag
aaaattgtggattttttagctttggaattacaaaaatatgatcaagcttattatagtgac
aataatcctttagttactgatgcacaatacgatgttctgaaaaatttaaataataaaatt
gtagccaagtttccacatttagcattagtaaatgatcattctaaaaaagttggatttaca
ccaagtgcgcagttttctaaggtggtacatcttaagccaatgctatcattagcaaatggt
ttttgtgtagaggatattagcaattttattactaagatacaaaattttttaaaaatagat
cattgccccaaaattgtttgtgaatataaaattgatggattgtcatttaatgctagatat
gagtatggggtcttaaccttagcaagcactagaggtgatgggcagattggagaaaatatt
actgaaaacttaaaaacaatacaatctttccctcaaaccttgcctattactgataaagta
tttgaagtcagaggtgaaatttatattactaataatgattttagagttttaaatattcaa
caacagaaactaggtaaagctttattttctaacccacgtaatgctgctgctggttcaatt
agacaacttgatcctgctattacagctcaaagaccactaaaatattttgtttatgcatta
ggagaagtaactaatcaccattttgctagtacgcagtttgaattactacagaaactatct
cagcttaagttttccgttaatacagattatatattatcagataatctgcattcaatgata
gaattttataataacgttgctacagaacgcaacaatttagcatttgagatagatggagta
gtgtacaaggtgaatgattttgctttgcaggaaagacttggagctactagtactagtcca
cgttttgcgattgcgtataaatttccagcattaattggtagaacaaagataactaacatt
actttacaggttggcaaaacaggagctgttactcctgtagcattgcttattcctattaat
attgctggagtaacaatatcaagagcaacgttgcataataaacaagaaatagaatcaaaa
gatattagaattggtgattatgtgtttttacatcgagcaggcgatgttattccaaaaatt
aatggtgttgatttatcagctagagatgcacaatcctctacaagatttatatttcctgca
acatgtccttcttgtaatcagaatttagttgttaatgaaggagaaacagtagcaagatgt
ggtaacagtttagcatgcccagctcaaatttatgaacgtatctgtcactttgtatcaaaa
gatgcattaaatattgatggattaggtagacagagaatacggtttttattagataataag
tacatagtaaatatagttgatatattcttgttagaagagaataataaacttttatcttca
aataaacttgaagatatagctggttggggaataaaatctgtaaacaagctatttaaaaat
atcaatcaagctaaaaatgtcattctagacagatttatttatgcgttagcagttaaacat
gttggtaaatatagcgctaaattattagctaaagaatttaaaacagcaaaaaattttata
gatcaatcactaaaattggcaaataatgttacagaaatatatgaaaaattatgtaatata
gaagggttaggagtaaaaactgctgaccagttaaagcaattttttatggtttcagctaat
gtgaatttgataacaaaacttgttaatatactaactatacaagattggcaatatcatggt
gataatttgttattatcaaatcaaactatagtatttactggaacttttgctactgtttca
cggtctgaaattaaagtacaagcagagaaattgggagcaaaggtaggtactcaagtatct
aataatactgatttactggtagtaggtaacaaagctggaaacaagctacagaaagctcag
caactaggaattaaaattattaatgaagaagaatggattaaaatggttaatgaataa
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