Oncorhynchus tshawytscha (Chinook salmon): 112217802
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Entry
112217802 CDS
T05605
Symbol
otofa
Name
(RefSeq) otoferlin isoform X12
KO
K19949
otoferlin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112217802 (otofa)
Membrane trafficking [BR:
otw04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
112217802 (otofa)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2
Ferlin_C
FerB
FerI
Motif
Other DBs
NCBI-GeneID:
112217802
NCBI-ProteinID:
XP_024234116
LinkDB
All DBs
Position
LG18:26483253..26611285
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AA seq
2000 aa
AA seq
DB search
MALLVHLKTVRDLRGKGDRIAKVTFRGLSFYTRVLENCEDEARFDEMFRWPIASRVDENE
ILELQVFNYSKIFTNRVIGTFRMVLQKVAEEGQLEVTDTLIDDNNTAIRTSVTVDIKYTT
MDGTVGVWSDGEFLDVPGDPEGTFQFETDSLLSGHSHGSGSGVSPGRSIHGIPTFRKAGK
GVFSAMKLHKTKSSRDDHKKDEPATLDMEDLDRKALRLGGFGGLDPDCISLASVTAVTTN
VSNKRSKPDIKMEPSSGRPVDYQISITVVEARQLVGLNMDPVVCVEIGEDKKYTSMKEST
NCPYYNEYFVFDFHVPPDVMFDKILKLSVIHSKNLLRSGTLVGTFKLDVGTVYSQPEHQF
YHKWAMLSDPDDITAGCKGYIKCDIAVVGKGDNIKTPHKANETDEDDIEGNLLLPEGVPL
ERQWARFYVKIYRAEGLPKMNTSIMANVKKAFIGENRDLVDPYVQVVFAGQRGKTSVQKS
SYEPIWNEQVVFTEMFPPLCKRIKVQIRDSDKVNDVAIGTHFIDLRKIANDGDKGFLPTM
GPAWVNMYGSTRHYTLIDEHQDLNEGLGEGVSFRARLLISVAVEILDTTSTEIVSSTEVQ
VEPVSNISESATGKIEEFFLFGSFLEATMIDRKIGDKPISFEVTIGNYGNQIDGVSKPPA
AKKMKKKEGGGESDEEESELIQQNSSEDEADDDGDLVSVSSTPPMKPVITDRNYFHLPYF
EKKPCIYIKSWWQDQRRRLYNSNIMDKIADKMEEGLNDVQEVIKTEKAYPERRLRGVLEE
LSTGCNRFVTLANKDQNQAGRTKLDKERLKSCMREMESMGQQAKLIRSQVKRNTVRDKLK
MVQNFLHRLRFLADEPQHSIPDVFVWMMSNNKRIAYARIPSKDILYSIVDEETGKDCGKV
KAVFLRLPGKKGFGPAGWTVQAKMEIYLWLGLNKQRKDFLSGLPNGFEENKAPRTSPCLQ
SVPPVSLVYNMKQVFQLRAHMYQARSLFAADSSGLSDPFARVFFSTHSQVTEVLSETLCP
TWDQLLVFEDVELFGEAGELRDDPPIIVVEVYDQDTVGKAEFIGRTFAKPITKMCDEHYG
PPRFPPQLEYYQIYRGNSTAGDLLAAFELLQIGQGGRAELPPIDGPTDSERGPILPVPMG
IRPILSRYRIEVLFWGLRDLKRVNLALVDRPRVDIECAGRGVQSALIQNYKKNPNFSTLV
KGFEVDLPENELLHPPLNVRVVDCRAFGRYTLVGSHAVTSLRRFIYSPPDKTHNNWASAG
DVTVNMDADPSVRKMDTVVKLDATSDAVVKVDVNEEKEEKKKKKKKKKGEVEEDDETDES
MLDWWSKYFASIETLMEILRAQEAALAEAEEREDQEIAAEGADIKPDDLPVKGSKGKEKS
RDKSRNKEKKKSHHAGEETEKHSSKPKVDELLVYNKELEAEYDNFEDWLHTFNLYRGKAG
DDDEAALDDDRIVGRFKGSMCMYKLPLSEEITREVGFDPNMGMFQSIPHNDPINVLVRVF
VVRATDLHPADVNGKADPYVVIKLGKSELKDKENYISKQLNPVFGKAFDMEATFPMESML
TVSVYDWDLVGTDDLIGETKIDLENRFYSKHRATCGIANSYSVHGYNVWRDPMKPSQILA
KLCKEGKLDGPHYGPGGRVKVANRVFMGATEIEDENGLKKQTDEHLALTVLKHWEEIPRV
GCKLIPEHVETRPLLNPDHPGIEQGRIEMWVDMFPMDMPAPGPAIDISPRKPKKYELRVI
IWNTDEVILEDDDYFTGEKSSDIFVRGWLKGQQEDKQDTDVHYHSLTGEGNFNWRFVYPF
DYLMAEEKIVISKKESMFSWDETEYKIPARLTLQVWDADHFSADDFLGAIELDLNRFPRG
AKTAKQCSINMVQNQAELPCISIFKQKRVKGWWPFVARDENDEMELTGKVEAELHLMSAE
EAEKSPVGLGRNEPDPLEKPNRPDTSLMWFVNPLKSIRYFIWHNYRWLILKALGLLLLLL
LLGLFLYSFPGYLVKKMLGA
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggctcttttagtccacctaaaaacagtccgggaccttcgcggaaagggggacagaatc
gccaaagtcacatttcgaggtctgtcgttctacacacgtgttctggagaactgtgaggat
gaggccagatttgatgagatgttccgatggccgatcgccagtagagtggatgaaaacgag
atactggagcttcaagtgttcaactacagcaaaatcttcaccaacagagtcattggaacc
ttccggatggttctacagaaggtggcggaggaggggcagctggaggtgacagacacactc
atcgatgacaacaacaccgccatacggactagtgttaccgtagacatcaagtacacgacc
atggatgggacagtgggggtgtggagcgatggggaattcctggacgttccgggcgaccca
gagggaacgttccagtttgagacagacagcctgctttccggacacagccatggatcagga
tcaggagtgtctcctggacgatccatccacggaattcccactttcaggaaagcagggaaa
ggggtattctcagccatgaagctccacaagaccaagagctccagagatgaccacaagaaa
gatgagccagccaccctggacatggaggatctggacaggaaggccttgcgtctgggaggg
tttgggggtctggacccagactgcatctccctggcgtccgtcaccgccgtcaccaccaat
gtctccaacaagaggtcaaagcctgatatcaagatggaacctagttctgggaggcctgtg
gattaccagattagcatcacagtggtcgaggccaggcagctggtaggcctaaacatggac
cctgtggtctgtgtggagattggggaagacaagaagtacacctccatgaaggaatccacc
aactgcccctactacaatgagtattttgtctttgacttccacgtcccaccagatgtcatg
tttgacaagatcctcaagctctcagtgatccactccaagaacctgctgcggagtggcacc
ttggttggcaccttcaagctagatgttggcacagtctactcccagcctgagcaccagttc
taccacaagtgggccatgctgtctgaccctgatgacatcacagcggggtgcaaaggttac
atcaagtgtgacatcgctgtggtggggaagggggacaatatcaagactccccacaaagcc
aatgagacggatgaagacgacatagaggggaacctcctgcttccagagggagttccgttg
gagaggcagtgggcgcggttctacgtgaagatctaccgagctgagggccttcccaagatg
aacaccagcatcatggccaatgtgaagaaggccttcataggggagaacagagacttggtg
gacccctacgtacaagtggtcttcgctggacagagagggaagacttctgtccagaagagc
agttatgagcccatctggaacgagcaggtggtcttcactgagatgtttcctccgctctgc
aaacgcatcaaggtccagatacgagactctgacaaagtcaatgacgttgccataggaacg
cacttcattgacctgcgaaagatcgccaacgatggtgacaaagggttcctccccaccatg
ggcccagcctgggtcaacatgtatggctcaacccgccactacactctgattgatgagcac
caggacctgaatgaggggctgggggaaggtgtgtccttcagggcccgcctcctcatctct
gttgccgtagagatcctggacaccacctccactgagattgtgagctccaccgaggtgcag
gtagagcctgtctccaacatctcagagagtgccacagggaaaatagaggaattcttccta
tttggttccttcctggaggccaccatgattgacaggaagatcggcgataagccaatcagt
ttcgaggtcacaataggtaactacggtaaccagatagacggagtgagcaagccccccgca
gctaagaagatgaagaagaaagagggaggaggagagagtgatgaggaagagtcagagctg
atccagcagaactccagtgaggacgaggcggacgatgatggggacctggtgtctgtgtcc
tccacccctcccatgaaacctgtcatcacagacaggaactacttccacctgccctacttt
gagaagaagccatgtatctacatcaagagctggtggcaggaccagaggagacgactctac
aactcaaacatcatggacaagatcgctgacaaaatggaggagggtctgaatgacgtgcag
gaggtcattaagacagagaaggcctatccagagcgcagactccgaggggtgctggaggaa
ctcagcactggctgcaatcgtttcgtcactttggccaacaaagaccagaaccaggcaggc
agaactaaactggacaaagagagactcaagtcctgcatgagagaaatggagagcatgggg
cagcaggccaagctgattcgctcccaggtgaagaggaacacggttagagacaaactgaag
atggttcaaaacttcctgcacaggctccgtttccttgccgacgagccccagcacagtatc
ccagacgtgtttgtatggatgatgagtaacaacaagcgtatcgcctacgcccgcatcccc
tccaaagacatcctctactccatcgtagacgaggagacaggcaaggactgtggcaaggtc
aaagctgtcttcctcaggctgcctggtaagaaggggtttggtccagcgggttggacagtg
caggctaagatggagatatacctgtggctgggtctcaacaaacagaggaaggacttcctg
tctggcctgcccaacggctttgaagagaacaaggctcccaggacaagcccctgtctacag
tctgtaccccccgtcagtctggtttacaacatgaagcaggtattccagctgagggctcac
atgtaccaggccaggagtctgtttgctgcagacagcagtggcttgtcagacccctttgcc
agggtattcttctccacacatagccaggtcactgaggtcctgagtgagactctgtgccct
acgtgggatcagctgctggtgtttgaggatgttgagctgttcggagaggccggcgagcta
cgagacgacccgcctatcattgtggtagaggtctacgaccaggacactgtgggcaaggca
gagttcattggtcggacatttgctaagcccatcactaagatgtgtgacgagcactacggc
cctccgaggttccccccacagctagagtactaccagatctaccgtggtaactctaccgcc
ggtgacctactggctgcctttgagctgctgcagattggacaaggggggagggcagagctt
cctcccatcgatggtccaacagactcagaacgtggacccatcctccctgtacccatgggc
atccgacctatcctcagccgctaccgcatagaggttctgttctggggcctgagggacctg
aagagggtgaatttggccctggtggacagacccagggtggacatcgagtgtgcagggaga
ggagtccagtctgctctcattcagaactacaagaagaaccccaacttcagcaccctcgtc
aaggggtttgaggtggacctgccagagaatgagctacttcaccctcctctgaacgtccgg
gtggtggactgcagagcgtttggccgctacaccctggtgggttcccatgccgtcaccagc
ctgcgacgcttcatctacagccccccagacaagacacacaacaactgggccagcgcaggt
gatgtcacagtcaacatggatgccgacccctcagtcaggaagatggacacggtggtcaag
ttagacgctacgtctgatgcagttgttaaagttgatgtgaatgaggagaaagaagaaaag
aagaagaagaagaagaagaagaagggagaggtggaggaggacgatgagacagacgagagc
atgctggactggtggtccaaatattttgcttccatagagacactgatggagatcctcagg
gctcaggaggcagctctggccgaggcagaggagagggaggaccaggagatagcagcagag
ggagcagatatcaaacctgatgacctccctgtaaaaggctccaaggggaaggagaagagc
cgagacaagagcaggaacaaggagaagaagaagagccaccatgcaggagaggagacagag
aaacactccagcaaacccaaagtggacgagctgctggtgtacaacaaggagctggaggca
gagtatgataactttgaggactggctccacaccttcaacctgtacagagggaaggcaggg
gacgacgatgaagcagccctggatgacgacaggatcgtgggcagattcaagggctccatg
tgcatgtacaagttgcctctgtctgaggagatcacccgggaggtgggctttgacccaaac
atgggcatgttccagagcattccacacaatgaccctatcaacgtgctcgtgcgcgtcttc
gtggtcagggccacagacctccaccctgctgatgtgaatgggaaagcggacccctatgtt
gtcatcaaactgggcaagtcagagctgaaggataaagagaactatatctccaaacagctc
aaccctgtctttggcaaggcgtttgacatggaggctacgtttcccatggagtccatgttg
accgtgtcagtgtatgactgggatctggtgggcactgatgacctcatcggggagaccaag
atcgacctggagaaccgcttctacagtaaacacagagctacctgtggcatcgctaacagc
tactctgtacatggttacaacgtgtggcgtgacccgatgaagccaagtcagatcctggcc
aagctgtgtaaggagggcaagctggacggcccccactacggtcccgggggcagggtcaag
gtcgccaaccgcgtcttcatgggtgccacagagatcgaggatgaaaatggtctgaagaag
cagacagacgagcacctggccctgacggtgctgaagcactgggaggagatccccagggtg
ggctgtaaactcatcccagaacacgtggagacaagacccctactcaaccctgaccaccct
ggcattgagcaggggcggattgagatgtgggtagacatgttccccatggacatgccagca
cctggacccgccatcgacatatcaccacgtaaaccaaagaaatatgagctcagggtgatt
atatggaatacagacgaagtaatactggaggacgatgattacttcactggggaaaagtcc
agtgacatatttgtcaggggctggctgaagggtcaacaggaggacaagcaggacacagac
gtccactaccactctctgacgggcgaggggaatttcaactggcgcttcgtgtaccccttc
gactacctgatggctgaggagaagatcgtcatctccaaaaaggagtccatgttttcctgg
gacgagaccgagtacaagatccctgcacgcctcaccctgcaggtctgggatgctgaccac
ttctccgctgatgactttctaggtgcgatagagctggacctgaacaggtttccccgcggg
gcgaagacagccaagcagtgttctataaacatggtccagaaccaggcagagctgccctgc
atctccatcttcaaacagaagagagtcaagggctggtggccattcgtggcccgtgacgag
aacgacgagatggaactcacgggtaaagtggaggcggagcttcatctcatgtcggcagag
gaggcggagaaaagtcctgttggtcttggacgcaatgagcctgaccctctggagaaacca
aatcgcccggacaccagtctcatgtggtttgtgaaccccctgaagtccatccgctacttc
atctggcacaactaccgctggctgatcctcaaggccctgggcctgctgctgctgctactc
ctgttgggtctattcctctactccttccctggatacctggtcaagaagatgctgggggcc
tga
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