Oncorhynchus tshawytscha (Chinook salmon): 112217958
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Entry
112217958 CDS
T05605
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04115
p53 signaling pathway
otw04145
Phagosome
otw04148
Efferocytosis
otw04350
TGF-beta signaling pathway
otw04510
Focal adhesion
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
112217958
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112217958
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
112217958
04148 Efferocytosis
112217958
09143 Cell growth and death
04115 p53 signaling pathway
112217958
09144 Cellular community - eukaryotes
04510 Focal adhesion
112217958
09142 Cell motility
04820 Cytoskeleton in muscle cells
112217958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112217958
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
otw00536
]
112217958
Membrane trafficking [BR:
otw04131
]
Endocytosis
Phagocytosis
Opsonins
112217958
Glycosaminoglycan binding proteins [BR:
otw00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
112217958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
VWC2L_2nd
EGF_3
TSP1_ADAMTS
TSP1_CFP_C
Laminin_G_3
EGF
TSP1_CCN
Laminin_G_2
cEGF
Motif
Other DBs
NCBI-GeneID:
112217958
NCBI-ProteinID:
XP_024234348
UniProt:
A0A8C8FDW5
LinkDB
All DBs
Position
LG18:37849588..37869204
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AA seq
1172 aa
AA seq
DB search
MKLTGIFLLLMLLTCESVRVAENRDDNSVYDLFELVQVSKKNHGVTLVKGDDPYSPAYKI
LNPDLIPELPESSFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKRDGSGAVFEIVS
NGKANTLDVVFSTVNKQQVVSIEDVDLATGHWKNITLFVQEDRAQLYVGCEEVNTAELDA
PIQSILTQETPATARLRIGKGAVKDRFMGVLQNVRFVFGTTLDAILRNKGCQNSVLTDEI
VLIDDTINGSSPAIRTDYTGHKTKDLQMICGFSCEDLAGMFKELKGLGVVVKELSNELRK
VTDENKFLMNRVGIHSGVCLHNGIVHKNKAEWTVDDCTECTCQNSATVCRKISCPLIPCA
NATVPDGECCPRCGTPSDYAEDGWSLWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSV
QTRDCYLQECDKRFKQDGAWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQLEGKDCQGEG
RQTETCTKSPCPINGNWGPWSLWDTCSATCGGGAQTRKRLCNDPAPKYGGKECQGDSKAT
QQCNKNACPIDGCLSNPCFPGTKCTSFPDGTWRCGKCPSAYSGDGIKCEDIDECKEVPDA
CFVFNGVHRCENTDPGYNCLPCPARYSGPQPFGRGVEEATARKQVCTPRNPCLDGSHDCN
KNARCNYLGQFADPMYRCECKPGYAGNGHICGEDTDLDGWPNQDLVCVENATYHCKKDNC
PNLPNSGQEDYDKDGVGDACDNDDDNDGIADDRDNCPFVYNPRQYDYDRDDIGDRCDNCP
YNSNPDQTDTDNNGEGDACSVDIDGDGILNEKDNCPYVYNVDQKDTDLDGVGDMCDNCPL
EHNPDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDHDD
DNDGIPDEKDNCRLAFNPDQIDSDGDGRGDACKDDFDQDNVPDIYDVCPENFDISETDFR
KFQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTER
DDDYAGFVFGYQSSSRFYVVMWKQITQTYWNNKPTKAQGYSGLSIKVVNSTTGPGEHLRN
ALWHTGNTPGQVKTLWHDPKNIGWKDFTAYRWHLIHRPRTGHIRVVMYEGKKIMADSGSI
YDKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacaggaatatttctgctgttgatgcttttgacctgcgagagcgtacgagtt
gcagagaaccgagacgacaatagcgtgtacgacctgttcgagctggtccaagtctccaag
aagaaccacggagtgaccctagtgaagggcgacgacccatacagtcccgcctacaagatc
ctcaacccggacctgatccccgagctccccgagagctccttcagggacctcatcgattcc
atccatgccgagaggggcttcctcctcctgcttaacttcaagcagtttaagcggaccagg
ggctccctcttgaccgtggagaagcgggacggatcaggagccgtgttcgagattgtctcg
aatggaaaagcgaacaccctggatgtggttttctccaccgttaataagcaacaggtggtc
tcgatagaagatgtggacttggcgacgggccactggaagaatattacgctgttcgtgcag
gaggaccgggcgcagctgtatgttggctgtgaggaggtgaacacggcggaactggacgct
cccatccagagcatcctcactcaggagactcccgccacagcgcgcctcaggatcgggaag
ggagcggtgaaggaccggttcatgggggtgctccaaaacgtgcgctttgtctttggaacc
actttggacgcgattctgcgcaacaagggatgtcaaaactctgttctgactgatgagatc
gtccttatcgacgacaccatcaatgggtccagccctgccattaggacggactacactggc
cacaaaactaaagacctgcagatgatctgtgggttctcctgtgaggacctggctggcatg
ttcaaggaattgaaggggctgggagtggtggtgaaggagctgtctaacgagctgcgcaaa
gtgacggacgagaacaagtttttgatgaacagagttgggatccacagtggagtctgtctg
cacaacggcatcgtccacaagaacaaggccgagtggaccgtcgacgactgtaccgagtgc
acttgtcaaaactctgccaccgtgtgccgtaagatctcctgccccctgatcccgtgtgcc
aacgcaaccgtgcccgatggagagtgctgcccgcgctgtggaacaccgagtgactatgcg
gaggacggctggtccctgtggtctgaatggacccactgttccgtgtcttgtgggcgggga
attcagcagagaggccgctcctgcgaccgcatcaacaacaactgcgagggaacctcggtc
caaaccagggactgctaccttcaggagtgtgacaaacgcttcaagcaggacggtgcctgg
agccactggtccccctggtcatcctgctcggtcacctgtggggcgggtgtcatcacccgt
atccgcctctgcaactcccccacaccccagctggaaggcaaggactgccaaggagaggga
agacagactgagacgtgcaccaagtcaccctgcccaatcaacggtaactggggaccctgg
tcgctatgggatacctgctctgccacctgtgggggaggagctcagacacgtaaacgtctc
tgcaacgaccccgcccctaaatatggtggtaaggagtgccagggtgattccaaggccact
cagcagtgcaacaagaacgcctgtcccatcgatggctgtctgtccaacccttgcttccct
gggaccaagtgcaccagctttcctgatggaacatggaggtgtggaaaatgcccctctgct
tactctggtgacggcatcaagtgcgaggacattgatgagtgcaaagaggttcctgacgct
tgcttcgtgttcaacggagtccaccgctgtgagaacactgaccctggttacaactgtctg
ccctgtcctgcacgctactctggacctcagcccttcggaaggggagtggaggaggccacc
gccaggaaacaggtgtgtacaccacgtaacccctgcctggatgggagccacgactgcaac
aagaacgcccgctgtaactacctgggacaatttgccgaccccatgtaccgctgtgagtgt
aagcctggctatgctggaaatggacacatctgtggtgaggacacggacctggacggatgg
cccaaccaagacctggtctgtgtggagaacgccacctaccactgcaagaaggacaactgc
cccaaccttcccaactcaggccaagaagactacgacaaggatggtgttggtgacgcttgt
gacaacgatgatgacaatgatggtattgctgacgacagggataactgtccgttcgtgtac
aaccccaggcaatatgactatgacagagatgatattggagatcgttgtgataactgtcct
tacaacagcaaccctgaccagaccgacacagacaacaatggggaaggagacgcctgctct
gtggacattgatggagatggcattctgaatgagaaagacaactgcccgtacgtctacaac
gtggaccagaaagacactgacctggacggtgtgggagacatgtgtgacaactgtcctctg
gaacacaaccctgaccaggttgactctgatgacgatcgtgtgggagataagtgtgacagc
aaccaggacatcgatgaagatggccaccagaacaacctggacaactgcccgtacatcccc
aacgctaaccaggccgaccacgacaaagacggcaagggagacgcctgcgaccacgatgat
gacaatgacgggatcccagacgagaaagataactgcagactggccttcaaccctgaccag
atcgactccgatggtgatggtcgaggagacgcttgcaaagatgactttgaccaagacaat
gtgcctgacatttacgacgtgtgtccggagaactttgacatcagcgagacggacttcagg
aagttccagatggttcctctggaccccaagggaacgtcccagatcgaccccaactgggtg
gtcagacatcagggcaaagagctggtccagaccgtcaactgtgaccctggcattgctgtt
ggttttgatgagttcaactctgtggacttcagtggtaccttcttcatcaacacagagcga
gatgatgactacgccggctttgtgttcggctaccagtccagctccaggttctacgtggtg
atgtggaagcagatcacacagacctactggaacaacaaacccaccaaggctcagggatac
tcaggactgtccatcaaggtggtcaactccaccactggacctggtgagcacctcaggaac
gctctctggcacactggtaacaccccaggacaggtgaagactctttggcacgaccctaag
aacattggctggaaagacttcacagcctacagatggcacctgatccacagaccaagaaca
ggacacatcagagtggtcatgtacgaggggaagaagatcatggctgattctgggagcata
tatgacaagacctacgcaggcggaagactaggcctctttgtcttctcgcaagagatggta
tacttctcagacctcaagtatgaatgcagagatgcataa
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