Oncorhynchus tshawytscha (Chinook salmon): 112218727
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Entry
112218727 CDS
T05605
Name
(RefSeq) bile acid receptor isoform X1
KO
K08537
farnesoid X receptor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112218727
09183 Protein families: signaling and cellular processes
03310 Nuclear receptors [BR:
otw03310
]
112218727
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys4 thyroid hormone receptor-like
112218727
Nuclear receptors [BR:
otw03310
]
1. Thyroid hormone like
1H. Liver X receptor like receptor
112218727
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
zf-C4
Hormone_recep
Motif
Other DBs
NCBI-GeneID:
112218727
NCBI-ProteinID:
XP_024235550
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Position
LG19:complement(38221608..38257668)
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AA seq
482 aa
AA seq
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MNEWVGHNVNVVGLLQIPPNDGFPLSESSHFFDILSEQGSPLLQDQEVLPFISYPSMQYP
SVEPSPPYYSSQNYYPQYNTDEWYSRTGMYELRKGPLEGTYNAEMEDASTIVPAVCNRTR
HTSHTGSVKGEELCVVCGDKASGYHYNALTCEGCKGFFRRSMTKKAVYKCKNGGTCEMDM
YMRRKCQECRLRKCKEMGMLAECLLTEIQCKSKRLRKNPKVSPGQSTGDETEGGDNGDTK
QVTSTTKLSKENLELSQEQQALLSFIVEAYQKHQIPQDMAKKLLQEQFNAEENFLLLTEM
ATSHVQVLVEFTKNIPGFSALDHEDQIALLKGSAVEAMFLRSAQVFTRKLPHGHTEVLED
RIRKSGISEEFITPMFTFYKSIGELQMMQEEHALLTAITILSPDRPYVKGQQAVERLQEP
MLEVLRRFCAMQHPLEPQHFARLLGRLTELRTLNHHHAEMLTSWRMSDHKFTPLLCEIWD
VQ
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgaatgagtgggtgggccacaacgtcaatgtggtgggactactacagatccctcccaac
gatggattcccactgtctgagagctcacacttctttgatattctgtcagaacaagggagc
cctctgctccaagaccaggaagtcttacccttcatcagctatcccagcatgcaatacccc
tcggtggagccctccccaccatactactccagtcagaactactacccccagtacaacacc
gatgagtggtactcacgcacagggatgtatgaactgaggaaaggacccctagagggcact
tataatgctgaaatggaagatgcgtccaccatagtgcctgcggtgtgcaataggacccgg
cacacgtcccacacaggcagtgtcaaaggggaggaactgtgtgtggtgtgtggggacaag
gcatccgggtatcactataatgctctcacctgtgaggggtgtaaaggcttcttcagacgg
agcatgaccaagaaagctgtgtacaagtgcaagaatggagggacctgtgagatggacatg
tacatgcggaggaagtgccaggagtgtcgtctccggaagtgcaaagagatgggcatgctg
gcagagtgtctgctgacagagatccagtgtaaatctaaaaggctgaggaaaaaccccaag
gtctcaccaggacagtccactggggacgagacagaggggggagacaacggagacaccaaa
caggtcacctccaccaccaaactgtcaaaggagaatcttgaactcagtcaagagcagcag
gctctcttgagcttcattgtagaagcttatcagaaacatcaaattcctcaagacatggcc
aaaaaactgctacaagagcagttcaatgcagaagagaacttccttcttttgacagagatg
gccaccagtcatgttcaagtgctggtggagtttaccaaaaacattccaggtttctcagcc
ctggaccatgaggatcagatcgcactgttgaagggctcggcagtggaggccatgttcctg
cgctcagcacaggtgtttaccaggaagctaccccatggacacacagaggtgttggaggac
aggatacgcaagagtggcatatcagaggagtttattacacccatgttcaccttctataaa
agcattggggaactccagatgatgcaggaagaacacgccctcctcaccgccattaccatc
ctgtcaccagaccggccgtacgtaaagggccagcaggcggtggagaggctgcaggagccc
atgttggaggtgctcaggaggttctgtgcaatgcagcacccgctggagccccagcacttt
gcccgtctcctgggccgtctgactgagctgcggacactcaaccaccaccatgctgaaatg
cttacctcctggcgcatgagcgaccacaagttcacacccctcctctgcgagatctgggac
gtacagtaa
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