Oncorhynchus tshawytscha (Chinook salmon): 112219043
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Entry
112219043 CDS
T05605
Name
(RefSeq) filamin-C-like
KO
K27393
filamin-C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112219043
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112219043
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112219043
Intermediate filaments
Intermediate filament-binding proteins
112219043
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filamin
Ig_GEX2_N
CH
Big_3_5
DUF5060
Big_1
Big_13
CH_2
Motif
Other DBs
NCBI-GeneID:
112219043
NCBI-ProteinID:
XP_042157778
LinkDB
All DBs
Position
LG19:50994998..51038412
Genome browser
AA seq
2714 aa
AA seq
DB search
MTSNNTHYYDDSQPPQHYQGTDNFEGDEEDEMPATEKDLAEDAPWKKIQQNTFTRWCNEH
LKCVNKTVTDLQKDFGDGLKLIGLLEVLSQKKMYKKHHTRPNFRQMKLENVSVALEFLDR
EHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEEAKKLTPKQRLLGWI
QNKVPELPINNFHRDWRDGKALGALVDNCAPGLCPDWKAWDPNHPVENAREAMQQADDWL
GVPQVIAPEEIVDPDVDEHSVMTYLSQFPKAKLKPGAPLKPKGVQLYPNKAKAYGPGIDS
HGNMVLKPAVFTVETLQAGQAEVLVYVTDPEGHTEEATVVFNNDKNRTYTVTYVPKVEGV
HKVKVLFAGQDIDKSPYTVNVAKAMGDPNKVQARGPGLEPTGNVANKPTYFDIYTAGAGN
GDVSVVVVDPEGKKDTVELILENKGDSVFRCTYRPMLEGPHTIHILFAGQEIPKSPFKVQ
IAEAINANACRATGRGLQPKGVRVKEVADFKVFTKGAGSGELKVSVTGPSGAETPVKVKD
IGDGVYECEYLPVQTGKYTVNITWGGQLIPRSPFEVEVSEEVGPQKVRAWGPGLLTGQVG
KSADFVVEAIGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTEPGDYAVHVICDDE
DIKDSPFMAHILPAANDCFPEKVKAFGPGLAPTGVIVNKPAEFTIDAREAGNGHLKIYAQ
DTEGVTIDIKITDKGDGTFLCVYVPTKPIKHTIIITWGDVNVPNSPFRVIVGEGCHPAKV
KVYGPGVEKTGLKANEPTYFTVDCAEAGQGDISIGIKCAPGVVGPAEADIDFDIIKNDND
TFTVKYTPPGAGKYTIMVLFAEQEIPISPFRIKVDPSHDAGKVRAEGPGLNKTGVEVGTP
THFTIFTKGAGKAKPEVQFTAAGLKGEAVRDFEIIDNHDYSYTVKYTAVQQGQMTISVTH
GGDPIPKSPFNITVAPPIDLGKVKVTGLDTKVEVGKDQEFSINTKGAGGQGEVAVKMTSP
SGRPIPCKLESDAANGAHSVKYIPPEEGPYKVDVSYDGNPVPGSPFAVEGVMPADPSKVR
AYGPGLKGGIVGKPAPFAIDTKGAGAGGLGLTVEGPCEAKIECQDNGDGTCSVFYLPTEA
GEYAINILFGEQHIPGSPFKAAVKPCLDPSKVTASGPGLEKAKAGEPAYFTVDCTSAGEA
ELTIEIVSESGAQAEVHIQKTADGTFSVTYIPPFHGTHTITIKYGGHVVPKFPAVIQVEP
AVDTSGVQVYGPGVEPRGVLKEVTTHFIVDARKTTKIGGDHVKARIINPSGANTDAYITD
KGDGTYRVEYTAFEDGMHLLEVLYDDVAVPKSPFRVSVVEGCDPTRVRAYGPGLEGGLIN
KANCFTVETRGAGTGGLGLTIEGASEAKMTCKDNKDGSCSVEYVPFTPGEYDVNINFGGH
PIPGSPFRVPVKDVVDPSKVKCSGPGLGDGVRAHVPQAFTVDATQAGKAKVEVQLTGPSG
SAEPVAVKNNGDGTHTVNYTPAQDGPYTVSVKYGDQEVPRSPFKVRSQPGHDASKVRASG
PGLDKSGVAASLPVEFTIDARDAGEGLLTVQILDPEGKPKKATIHDNRDGTYTVSYVPDS
TGPYTITIKYGGDEIPYSPYRISALPTGDASKCLLTVSIGGRALASGLTKMQAHEETIVS
VDAKAAGKGKVTCSVTTPAGVELDMDVQENRDGTYDIYYTAPEPGKYVITIRFGGQHIPK
SPFHVTATKEPVVPSDGMDQFRPLNLVIPFSAQQGPITGEVRMPSGKTARPHITDNKDGT
ITVKFNPTEKGLHEMDIKYEGNHIPGSPLQFYVDAINSGLVTAYGPGLCHGTVNKPATFT
VVTKNAGEGGLSLAVEGPSKAEISCKDNKDGTCTVSYLPTSPGDYNIIVKFDNKHIPGSP
FTAKITGDDSIRTSLLNVGTAADLSLKITESDLSLLTASIRAPSGNEEPCLLKRLPNRHI
GISFTPKEVGEHEVSVKKGGKHVTNSPFKIQVGQSEIGEASRVKAFGKGLVEAHTFEMAE
FFVDTRNAGYGGLGLSIEGPSKVDINCEDVEDGTCRVSYCPTEPGNYIINIKFSDKHIPG
SPFTVKVTGEGRMKESITRKRTAPSIASVGSACGLNLKIPGNWFQMVSAQERMTRTFTRS
SHTYTRTERTEISKMRGGETKREVRVEESTQMGGAGGGSPFRDVFGDFLGRESLASFAGI
PATATPTPGETVTQGSMTAQVTSPGGKTEQAEIVDGGDSTYSVRFVPQEMGAHTVNVKYS
GQHVPGSPFQFTVGPMGEGGSHKVRAGGTGLERGVAGVPSEFSIWTREAGAGGLSIAVEG
PSKAEISFEDRKDGSCGVAYIVQEPGDYEVSIKFNNEHIPDSPFIVPIATLSDEARRLTV
TSLQEKDLKVNQEASFAVQRNGARGVVDAKVHTPSGSAEECYVTELDSDKNAIRFIPREN
GVHSIDVKFNGSHIPGSPFNVRVGEAGQAGDPGMVTAYGPGLEGGSTGVASEFVVNTCNA
GSGALSVTIDGPSKVKMDCSECPDGYKVIYTPMAPGSYLINIKYGGPNHIVGSPFKARVT
GTRLSGGHSLHETSSVLVETVTKTSKVAGAYSSLSSSSKLTSDASKVVCRGAGLSKALVG
QKNIFNVDCSKAGSNMLLVGVHGPTTPCEEVYVKHMGNRLYNVTYTVKDKGNYIVIVKWG
DDSVPGSPFNVAVP
NT seq
8145 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcaataacacacattactacgacgacagccagccaccgcagcactaccagggc
actgacaacttcgagggggacgaggaagacgagatgccggctacggagaaagatcttgcc
gaggatgcaccatggaagaaaatccaacagaacacctttacaagatggtgcaacgagcat
ctcaagtgtgtcaataagaccgtgacagacctccagaaggattttggcgacgggttaaag
ctcattgggctcctggaggttctgagccagaaaaagatgtacaaaaaacaccacaccaga
cccaacttccgacagatgaaattggaaaatgtgtccgtcgctctggaatttttggacagg
gaacacatcaagttggtgtctattgactccaaggccatcgtggacggtaatctgaaactg
atcctaggtctgatctggactctgatcctgcactactccatctccatgcccatgtgggag
gatgaggatgatgaggaggctaagaaactgacccccaagcagaggctgctgggatggatc
cagaacaaggtgcctgagctacccatcaacaacttccaccgtgactggagggatggcaag
gccctgggagccctggtagacaactgtgcccctggtctgtgccccgactggaaggcctgg
gaccctaaccaccctgtggagaatgccagagaggccatgcagcaggctgacgactggctg
ggcgtgccccaggtgatcgcccctgaggagattgtcgatccggatgtggatgaacactca
gtgatgacctacctgtcccagttccccaaggctaagctgaagcctggcgctcccctcaaa
cctaaaggcgttcagctgtaccccaacaaggccaaggcatacggacctggtattgattcc
cacggaaacatggttctgaagccagcagtgttcacagtggagactctgcaggcaggtcag
gctgaggtgctggtctatgtgaccgatcccgagggacacactgaggaggctacggtggtc
tttaacaatgacaaaaacaggacctacactgtcacttatgtacccaaggttgagggtgta
cacaaggtaaaagtgctgtttgcagggcaggacattgacaagagtccctacacagtcaac
gttgccaaggccatgggcgatcccaacaaggtccaggccagaggaccagggctggaacct
accggcaacgtggccaacaaacccacctatttcgacatctacaccgcaggtgctggtaat
ggtgatgtgagtgttgtcgtcgtggatcctgaggggaagaaagacacagtggaactgatt
ttggaaaacaaaggggacagtgttttccgttgcacctaccggcccatgttggagggcccc
cacaccatccacatcctgttcgcgggtcaggagatccccaagagccccttcaaagttcaa
atcgcagaggccatcaatgccaacgcgtgtcgtgccacgggccgaggcctccagcctaag
ggggtgagggtgaaggaggtggcagacttcaaggtcttcaccaagggagccggcagcgga
gagctcaaagtctccgtgactggaccaagtggagcagagacaccagtgaaagttaaggat
attggtgatggtgtctatgagtgtgaatatctccctgtccagactggtaaatacacagtt
aacatcacctggggaggacaactcatcccacgcagtcccttcgaggtggaggtgagtgag
gaggttggccctcagaaggtgagagcttggggccccgggctgctgaccggccaggtgggc
aagtcagctgacttcgtggtcgaggccatcggcaccgaagtaggaactctgggtttctcc
atcgagggtccgtcccaggctaagatagaatgtgacgataagggtgacggctcctgcgat
gtccgctattggcccactgagccaggtgactacgccgtccatgtcatctgtgatgacgaa
gacatcaaggacagccccttcatggcccacatcctgcctgcagccaatgactgcttccct
gaaaaggtgaaagctttcggtccaggtctggcgcccactggggtcattgtaaacaaaccg
gcagagttcaccatcgatgcccgcgaggctggcaacggccacctcaagatctacgcccag
gatacagaaggtgtcaccatcgacattaagatcactgacaaaggagacggcaccttcctg
tgtgtgtacgtccccaccaagcccatcaaacacaccatcatcatcacctggggagacgtc
aacgtgcccaacagtcccttcagggtgattgttggagagggctgccacccagccaaggtc
aaggtatatggtccaggagtggagaagacaggactcaaggcaaatgagcccacctacttc
actgtggactgtgccgaggctggacaaggagacattagcattgggatcaagtgtgctcca
ggagtggtgggcccagccgaggctgacatcgactttgacatcatcaagaacgacaatgac
accttcactgtcaagtacactccgcccggcgctgggaaatacaccatcatggtgctgttc
gccgagcaggaaatccccatcagtccattcagaattaaggttgatccttcccatgatgcg
ggcaaagtgagggctgagggcccaggactcaacaagacaggcgtggaggtgggtactcca
acccacttcaccatctttaccaagggagcaggcaaggccaagcctgaggtccagttcaca
gcagcaggcctgaagggggaagctgtgagggactttgagatcatcgacaaccatgactac
tcctacaccgtcaagtacacggccgttcaacagggccagatgaccatctccgtcacccac
ggaggggaccccattcccaagagccccttcaatattactgtggctcctcctatagatctg
ggaaaggtcaaggtgacaggactcgacaccaaagtagaggtgggcaaggaccaggagttc
tccatcaacaccaagggagctggtgggcagggcgaggtagccgtcaagatgacctcaccc
tccggccgaccaatcccctgcaagctggagtcagacgcggccaatggcgcccactctgtg
aagtatattcccccagaggaggggccttacaaggtggacgtcagctacgatgggaaccct
gtccctggatcccccttcgcagtggagggagtgatgcctgccgacccttcaaaggtgcgc
gcttatggcccaggcctgaagggaggcattgtgggtaaaccagctccattcgccatcgac
accaaaggagcgggcgctggtgggctgggcctgacggtggaggggccgtgcgaggctaag
attgagtgtcaggacaacggagacggaacctgctcagttttctacttgcccactgaggct
ggagagtacgccatcaacatcctgtttggagagcagcacatccctgggtctcccttcaag
gcagctgtgaagccatgtctcgaccccagcaaggtaacagccagtgggccaggcctggag
aaggccaaggcaggggaaccagcctacttcacagtggactgcaccagtgctggagaggct
gaactcaccattgagatcgtctctgagtctggggctcaggccgaggtccacatccagaag
actgcagatgggaccttctctgtcacctacatcccacccttccacggcacacacaccatt
accatcaagtacgggggtcatgttgtacccaagttccccgcggtcatccaggtggagccg
gctgtggacaccagtggtgtgcaggtctatggaccaggggtggagcccagaggagtcctc
aaggaggtcaccacccacttcatcgtggacgcccgtaaaacgaccaagattggcggggac
cacgtgaaagcacgcatcatcaacccttcaggcgccaacacagacgcctacatcacagac
aagggagacggaacctacagagtggagtataccgccttcgaggacggtatgcacctgctg
gaggtgttgtacgatgacgtggcggtccctaagagtccgttcagggtgtctgtggtggag
ggctgtgaccccacccgggtcagggcctacgggccaggcctggagggaggacttatcaac
aaagccaactgcttcaccgtcgagaccaggggtgctggtactggaggcctgggcctgacc
atagagggagcctccgaggctaagatgacctgtaaagacaacaaagatggcagctgcagc
gtagagtacgttcccttcacacctggagagtacgacgtcaacatcaacttcggaggacac
cccattccaggcagtccgttccgggtgccagtgaaggatgtggtggaccctagtaaggtg
aagtgttcaggtccagggctgggggatggagtcagagcccacgtacctcaggcctttaca
gtggacgctacccaggctggaaaggcaaaggtggaagtacagctaacaggaccatcaggt
tctgctgagcctgttgctgtgaagaacaacggtgacggcacacatacggtcaactacacc
ccagctcaggacggcccttacactgtgtctgtcaaatacggagatcaggaggtccctcgc
agtccattcaaggtgaggtcccagcctggtcatgatgccagtaaggtgcgtgccagtggt
ccaggtctggataaatcaggtgtggccgccagcctaccagtggagttcaccatcgatgcc
cgcgacgcaggagagggactgctcactgtacagatactggatcccgagggcaagccaaag
aaggccactatccatgacaacagagatgggacatacacagtgtcctacgtaccagactcc
accggcccctacaccatcaccatcaagtatggaggagatgagattccctactccccctac
cgcatctcagctctgcccactggagacgccagcaagtgtctgcttactgtgtctatcgga
ggccgtgccctggcgtcgggtctgaccaagatgcaggcgcacgaagagaccatcgtctcc
gttgacgcaaaggctgcagggaagggcaaggtgacctgttcggtgacgaccccagcgggg
gtggagctagacatggacgttcaggagaatcgtgacggaacctacgacatctactacacg
gctccggaacctgggaaatacgtcatcaccatccggttcggaggacaacacatccccaag
agccccttccatgtaacggccaccaaggagcctgttgtccctagcgacggtatggaccag
ttcagacctcttaacctggtcatccccttctccgctcagcagggaccaatcacaggtgag
gtgcgtatgccctccggtaagacggcccgtccccatatcacagacaacaaggatgggacc
atcacagtcaagttcaaccctactgagaagggtctgcatgagatggacatcaaatatgaa
ggaaaccacatcccaggaagtcccctccagttctatgtcgatgctataaacagtggtctg
gtgacagcgtatggacctgggttgtgtcatggcaccgtcaacaaacccgccacctttacc
gtcgtcaccaagaacgctggagaaggtggtctgtccctggctgtggaaggtccctctaag
gcagagatcagctgtaaagacaataaggacggtacatgtactgtgtcctacctgcccacc
tcaccaggagactacaacatcatcgtcaagtttgacaacaagcacatccccggcagtccc
ttcactgctaagatcacaggtgatgactctatcaggacgtccctgctcaacgtaggaaca
gcagcagatctatccctgaagatcacagagtctgacctgagcctgctgacagctagcatc
agagctccatcaggaaacgaggagccctgtctgctcaagagactgcccaacagacacatc
ggtatctcctttacccctaaggaggtgggagagcacgaagtgagcgtgaagaagggtggt
aagcacgtgaccaacagccccttcaagatccaggttggccagtcagagattggcgaggcc
agccgggtcaaggccttcggtaaaggactggtggaggcacacacctttgaaatggctgag
ttctttgtggacactaggaatgcaggttatggtggtctgggattgtctatcgagggcccg
agtaaagtggacataaactgtgaggatgtggaggatgggacttgcagagtcagttactgc
cccacagagccaggcaactacattatcaacatcaagttctctgataagcacatccctgga
agtcctttcacggtgaaggtaacaggagaaggaagaatgaaggagagcatcaccaggaag
agaacagccccttccatcgcctctgtcggcagcgcctgtggcctcaacctgaaaatccct
ggaaactggttccagatggtgtcagcccaggagaggatgactcgtacgttcacacgcagc
agccacacgtacacgcgcacagagcgcacggagatcagcaagatgaggggcggagagacg
aagagggaggtgagggtagaggagagcacccagatgggaggagcaggaggaggcagtccc
ttcagagatgtgtttggagacttcctgggcagagagagtctggctagcttcgctggtata
cccgctacagccacaccaacacctggtgagacagttacccagggtagtatgacagcccag
gtgaccagccccgggggtaaaacagaacaggcagagatcgtagatggaggtgatagcacc
tacagcgtccgcttcgtaccccaggagatgggggcacacacggtcaacgtgaagtacagc
gggcagcatgtccccggaagtcccttccagttcactgttgggcccatgggagaaggaggg
tcccacaaggtccgggctggaggcactgggctggagagaggagtggcaggagtaccctct
gagttcagtatctggacccgtgaggctggtgcaggaggcctgtccatcgcagtagagggg
cccagtaaggctgagatctcatttgaagacaggaaggatggatcctgtggggtggcctac
atcgttcaggagccaggtgactatgaagtgtctatcaagttcaacaacgagcacatcccc
gacagccccttcatcgttcccatagcaacgctgtctgacgaggcacgcagactcactgtc
accagcctgcaggagaaggatctgaaggtgaatcaggaagcgtcgttcgctgtgcagcgt
aatggggcgaggggcgtggtcgatgctaaggtccacaccccatctggctcagctgaggag
tgttacgtcaccgagctggacagtgacaagaacgcgatccgcttcatcccacgtgagaac
ggcgtgcactccattgacgtcaagttcaacggcagtcacatccccggcagcccgttcaac
gtgcgggttggggaggcaggacaggctggagacccaggcatggtgacagcatacgggcct
ggcctggagggaggatctacaggcgtggcctctgagttcgtagtgaacacgtgtaacgcg
gggtcaggtgccctgtctgtgaccattgacggcccctctaaggtcaagatggactgttct
gagtgccccgatggctacaaggttatttacactcctatggcccccggcagctatctcatc
aacatcaaatacggaggacccaaccacatagtgggcagccccttcaaagccagagtcaca
ggtacccgtctgtccggtggtcacagccttcacgagacgtcctcggtgctggtagagacg
gtcaccaagacttccaaggttgccggagcgtacagctccttatcgtcctcatccaaactg
acctcagatgccagcaaagtggtgtgtcgaggcgcagggctctctaaggctctggtggga
cagaagaacatcttcaatgtagactgcagcaaagcaggctctaacatgttgctggtggga
gtgcacggccccacgaccccatgtgaagaggtgtacgtcaaacacatgggcaaccgcctc
tacaacgtcacctacactgtcaaagacaagggaaactacatcgttatcgtcaagtggggc
gacgatagtgtccccggtagccccttcaacgttgctgtgccttga
DBGET
integrated database retrieval system
