Oncorhynchus tshawytscha (Chinook salmon): 112220802
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Entry
112220802 CDS
T05605
Name
(RefSeq) protocadherin gamma-C5-like
KO
K16497
protocadherin gamma subfamily C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112220802
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112220802
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Motif
Other DBs
NCBI-GeneID:
112220802
NCBI-ProteinID:
XP_024238470
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Position
LG21:complement(7222106..7225504)
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AA seq
824 aa
AA seq
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MTKRIGYRNWRWLALWWRHFILLWSTIDGQTRYTIPEELKQGSVVGNLAKDLGLGLSEIF
DRKLHVASEAGKQYFNVDAGKGELVVNERIDRETLCGQSASCVLPLQVVIENPLQLHRIE
VEIRDINDNSPNFLTKDRVLKMAELTAVGARFPLESAEDPDVGSNALKSYILSKDECFSV
KVKDIEGGRKIPELVLEKPLDREKKAVHELLLTALDGGTPARSGTSQITVTVLDNNDNNP
VFQKALYNVRINENSEKGTSLIKLEATDSDEGVNGEIEYSFGEHTLESVLSVFDVDAVTG
EMFLRGELDYESAAYYRIDITAVDKGIPEMEGHCRVQVEITDVNDNAPEIVLTSKPSPVR
EDAPSGTVVALISARDLDSGNNGKVTLQLTKGHPFSLKSSFSDNYALVTSGVLDRESFSE
YNIEITATDSGSPPLTTKKIIPVSIIDVNDNPPKFSQSSYNVYLKENGRPGSMLSSVSTS
DLDFGDNAKISYSILDSKVQDVSVSSYVYMNTDNGSIYSMHSFDYEKLKVFQILVQAKDH
GSPSLSSNVTVHVFILDQNDNAPAVIYPSAALGSLSHQKMPRSAKAGHLVTKVTAVDADS
GHNAWISYKLVEATDTSLFSVNLYTGEVRTKRAVSEQDDSSQRLLIEIQDDGEPVQSASV
TLTILVEDGLHELISDLRQKAPEPSKKSGRIALYLILSLASVSVLSLVTFAILAVKCVRN
SRSSGSCCMRRDDLDGYKNPNRNLQIQLNTDGPIKYVEVLGGDMLSQSQSFRSCLSPMSE
FSDFTFVKPSSTTDFKEMINILDASLPDSAWTFESQQVRSDVGL
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagagaattggataccgaaactggagatggttggctctttggtggcgtcatttc
attctcttgtggagtacaatagacggacagactcgctacaccattccggaggaactgaaa
cagggctctgtggtaggaaatctagccaaagatctgggtttgggactctctgagattttt
gaccgtaaactgcatgtcgcctctgaggctggtaagcagtatttcaatgtggatgcgggg
aagggcgagctggtcgtcaatgagagaatagacagagagacgttatgcggacaaagcgcc
agctgcgttttacctctgcaggttgtcattgagaacccgttacagttgcaccgtattgag
gtggaaatacgagacataaatgacaattctcctaatttcttaacaaaagatcgtgttctg
aaaatggctgaattgacagctgtaggcgcgcgttttccgttggaaagtgcagaggacccc
gatgtgggaagcaatgcacttaaatcctacattcttagtaaagacgaatgtttcagtgta
aaagttaaagacattgaaggaggacgaaaaatcccagagctagtgttagagaagccactg
gacagagagaaaaaagctgtccatgagctattattgacggctctagatggaggcactccg
gctaggtctggaacttcacagatcacggtcactgtccttgataataatgacaataatccc
gtatttcagaaagctctatataatgtaaggattaatgaaaatagcgaaaagggcacttcc
ttgattaagcttgaggctactgactcagacgagggtgtaaacggggagatagaatattca
ttcggcgagcatacactagagtcagtgttatctgtgtttgatgttgatgcagttacgggg
gaaatgtttctaagaggggaattagattatgagagtgcagcttattatcgtatagacatt
actgctgtagataaaggcatcccagaaatggagggacactgtcgggtacaggtcgaaata
acagacgttaatgacaatgctcccgaaattgtcctcacctccaaacctagtccagtgcgc
gaggacgcaccgagtggcacggtagtggctttgatcagtgcccgtgacctagactctggg
aataacggtaaagtaacgttacaacttacaaaaggccatcctttcagtctgaaatcgtca
ttttctgataattatgcactggtcaccagtggtgttttagacagagagagtttctcagag
tataatattgagataacagccactgattcaggttcccctcccctgactaccaagaaaatt
ataccagtcagcatcattgatgtcaacgacaacccccctaaattcagccagtcctcatat
aatgtctatttaaaagagaatggacgaccaggatcaatgctctcctcagtatctacatct
gacctggatttcggggataatgccaagatctcctactccatcttagactccaaagtgcag
gacgtttctgtgtcttcctatgtgtacatgaacactgataacggcagtatctacagcatg
cactcgtttgactatgagaaactaaaggtgtttcagattctggtgcaggccaaggaccac
ggctctccctctctgagcagcaacgtcactgtccatgtttttatcctggaccagaacgac
aatgcccccgctgttatttacccctccgctgccctgggctcgctctctcaccagaagatg
ccccgctccgctaaagcaggccacttagttactaaggtaacggccgtggacgcagactcg
ggccataacgcctggatctcatataaactggtggaggccacagacacgtctctgttcagt
gtcaatctttacacaggggaggtgaggactaaacgcgctgtgtccgagcaggacgactcc
tctcagaggctgcttatagagatacaggatgacggggagccggtccagtctgcctcggtc
acactgaccatactggtagaggacgggctccacgaactcatctcggatctccggcagaaa
gcgccagagcctagcaagaaaagcgggagaatcgccctgtatttgattctctctctggcc
tcggtgtccgtgctgtctctggtgacttttgccatcttagcagtcaagtgcgttagaaac
agcaggagcagcggtagttgctgcatgagacgggacgacttggacggctacaagaacccc
aacagaaacctgcagattcagctcaacactgacgggccgattaagtacgtggaggtcctg
ggaggggacatgttgtctcagagtcagtccttcaggtcctgtctctctcccatgtcagag
ttcagtgatttcaccttcgttaagcccagcagcaccactgattttaaggagatgatcaac
atcctagacgcgtctttacccgacagcgcctggacctttgagagccagcaggtgagaagt
gacgtcggtctataa
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