Oncorhynchus tshawytscha (Chinook salmon): 112220809
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Entry
112220809 CDS
T05605
Name
(RefSeq) protocadherin gamma-C5-like isoform X1
KO
K16497
protocadherin gamma subfamily C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
otw04515
]
112220809
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112220809
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_tail
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Bact_surface_Ig-like
Motif
Other DBs
NCBI-GeneID:
112220809
NCBI-ProteinID:
XP_042158877
UniProt:
A0A8C8GDX2
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All DBs
Position
LG21:complement(7175128..7376769)
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AA seq
968 aa
AA seq
DB search
MESRQRKGYGGWPVLSLWFSLACFTGATAQLSYSILEELRPGAVVGNIAKDLGLTVQRII
QRKLRVISESNAQYFEVNHATGDLVIRQTIDREHMCELSATCSLHLEIVLENPLAIHRVL
VDIVDANDNAPQFSTKNISLEISEAAAPGTRFRLESAHDPDVGINSLRTYHLAPNDCFVL
NVETKSDGSKFPELVLEKALDRETQASFRLLLTAVDGGKPEKSGSTLLLIKILDVNDNAP
VFEEPVKKVSILENVEPGTLVTKLNATDADYGQNGQISFLFSKYTQDRVLKLFSVDSKTG
EIRVNGQVDYETANEYHITVQARDGGTPAMEGSCNIIVDVTDVNDNSPEVTLTSLTSPIR
EDAAPGTVIALISARDLDSGKNGEVTLKVQSGLPFKLNSAFGEHYNLVTDGNLDRETMAE
YTVVIMATDAGSPPLSSRTTFVVKLSDVNDNAPSFSQPSYSVDVPENNDLRTPITMVTAS
DPDTGDNARVSFSILPSMVQGSLISSYVYINPETGHIYSMRSLDHETLNAFRVEVQARDA
GAPPRTANVTVHVFVVDLNDNAPLIVYPPFPQDTGLLLSVPQSAGPGHLINKLVGVDPDS
GHNAWLFYSIAPGPHAGLFRIAPHTGELRTARKLAEEEGGSAYDIIVVVQDNGEPTLSTT
VAITVTVEEKGTSDAAMDNRKTSVMRRTGMPDITLYLIISLACVSAVFFLTFLILMVRCL
RHRSDLGGTGCCYSRHRPSRAHHQRPSKDLHLQLNTDGPIRYMEVVGGAQDPPGTRTYRP
CYSTISSRSDFVFVKTPMMSHNNTLSMTLNRKHLMNSAIEQKPPNADWRFTQGQRPGPSG
AGGPPEMAMGTGPWPNPPTEAEQLQALMAAANEVSEATATLGPGTMGLSTRYSPQFTLQH
VPDYRQNVYIPGSTATLTSNPQQQQQQQMAAQHQALQAQPSEAAPQPEPPKAAQTPASKK
KSTKKEKK
NT seq
2907 nt
NT seq
+upstream
nt +downstream
nt
atggaatccagacagaggaaaggctacggagggtggccagtgctgagtctatggttttct
ctggcgtgctttacaggcgcgaccgcgcaactcagctactctattttggaggagctaaga
cccggggctgtggtcgggaatatcgctaaggatttgggcctcacggttcagaggataatt
cagagaaaattgcgggtgatctcggaatctaacgcgcagtacttcgaggtaaaccatgcg
actggggatttggttattagacagacaattgacagggaacacatgtgcgaattaagtgca
acatgttcactgcatcttgagattgtacttgagaaccctttagcaatacatcgggttctt
gtggatattgtggatgcgaatgacaatgcgccgcagttttccactaagaatatttccttg
gagatatcagaggcggccgcgccgggcactcggttccgactggagagtgcgcacgaccca
gatgtgggtatcaactctctgcgcacttatcacctcgcacccaacgactgctttgttttg
aatgtggaaacgaaaagtgacgggagtaagttcccggaattagttttagagaaggctttg
gatagggagacgcaggcctcgtttcgcctgttgctcacggcggtagacgggggaaagccg
gagaagtctggatccactcttttactcataaaaattctggatgtcaatgacaatgcgccc
gtctttgaagagccggtgaaaaaagttagcattttggagaatgttgaaccgggcacttta
gtaacgaaactgaacgcgaccgatgcggattacggtcagaatgggcagatctccttcctg
tttagtaaatacacgcaggaccgggtgctcaagctattcagcgtggattctaaaaccggg
gagatccgtgtaaatggccaggtggactatgagacagcgaatgaatatcacatcaccgtg
caggccagggatgggggaacccccgccatggagggttcctgtaacattatagttgacgtc
actgatgtgaatgacaattctccagaggtaacgttgacgtcactgaccagtcccatcaga
gaggacgcagctcctggtacagtcatcgccctcatcagtgcaagggacctggactctggt
aagaatggggaggtgacattaaaggtccagtccggcctgcccttcaaactcaactctgcc
tttggtgagcactacaacctcgtcacggacggcaacctggaccgagagaccatggcagag
tacactgtggtcatcatggcgaccgacgcgggctcccctcccctgtcgtcgcggacgacc
ttcgtggtcaagctatcagatgtgaacgacaacgctccttcattctcccagccctcctac
tcagtggacgtccccgagaacaacgatctccgcacccccatcaccatggtgacggcctct
gacccggacacaggggacaacgcccgtgtctccttctccatcctgcccagcatggttcag
ggctccctcatttcctcctatgtctacatcaacccagagactggacatatctacagcatg
cgttccctagaccatgagaccctcaatgccttccgtgtcgaggtgcaggcccgagacgcc
ggggcgccaccccggactgccaacgtcaccgtgcatgtgttcgtagtggatcttaacgac
aacgcgcccctcatcgtatatccgcccttcccccaggacactgggctgctgctgagtgta
ccccagtcggctgggccaggtcatctcattaataaactagtaggggtggaccctgatagt
ggacataacgcttggctgttctactccatcgccccagggccacacgctggtctcttccgc
atcgccccccacactggggagctccgcaccgcccgcaaattagctgaggaggagggcggc
tccgcctatgacatcatcgtggtcgtccaggacaacggcgagcccactctctccaccact
gtggccatcacagtaaccgtggaggagaagggcaccagcgacgccgccatggacaaccgg
aagacgtctgtgatgcgtcgcaccggcatgcctgacatcaccctgtacctcatcatctcg
ctggcctgtgtctcggccgtgttcttcctcaccttcctcatcctcatggtgcgatgcctc
cgccaccgcagcgacctcggagggacaggctgctgctacagccgccaccggcccagtagg
gcccaccatcagagacccagcaaggacctccacctgcagctcaacacagacggacccatc
cgttacatggaggtggtgggaggggctcaggaccccccaggaacacggacctacagaccc
tgctactccaccatctccagccgcagtgactttgtgtttgtcaagacgcccatgatgagt
cacaacaacaccctcagcatgacactcaacaggaagcacctaatgaactcagccattgag
caaaagcctccgaacgctgactggcgcttcacacagggacagagacctggacccagtggg
gctggaggtccccctgagatggccatgggaacaggaccctggcccaacccccccactgag
gccgagcagctccaagccctgatggccgcagccaacgaagtgagcgaggcgaccgcaacc
ctggggccgggcaccatgggactaagcacccgttacagcccacagttcaccctgcagcac
gtgcccgactaccgtcagaacgtctacatccctggcagcaccgccaccttgacctccaac
ccccagcagcagcagcagcagcagatggcagcccaacatcaggccctgcaggcccagccc
tctgaggccgcccctcagcctgaaccccccaaggctgcccagacccccgcctccaagaag
aagtccaccaagaaggagaagaagtag
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