Oncorhynchus tshawytscha (Chinook salmon): 112221315
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Entry
112221315 CDS
T05605
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase-like
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
112221315
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
otw03400
]
112221315
Enzymes [BR:
otw01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
112221315
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
112221315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
112221315
NCBI-ProteinID:
XP_042183197
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All DBs
Position
LG01:9485945..9492944
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AA seq
438 aa
AA seq
DB search
MEEKQYTSLTVPTDYLQQWYQSTQQHPQAQHVMQYHNTGHMGHYMEGSREDRVMTELSVH
QDLPVHQELDFHHDFHQEPIVQHDQPVDTSQAPTPGKRKRGRPPKQKPGEGQPQEDYDQA
EALKKAKRTLNRFNGMSVDEVMAKTLPDIIDHNLDILIIGINPGLLSAYKGRHYPNPGNH
FWKCLFLSGLTDEQLNHMHDLSLPEKYGIGFTNMVERTTPGSKDLSSKEFREGGRQLVEK
LKKYKPLIAAFNGKCIYEIFSKEIFGVKAKKLEFGLQPYKIPETETVCYLMPSSSPRCAQ
FPRAQDKVHFYIKLKELRDKIKGVVSVAREVQETEYHFDLGLAKEDAKRMTIKEEQVDPE
YETCDGEREEARQSTSYCNISSTKETAMPSKDQAQAQATPLNHMPYDQWMTQSFADQIPD
ISCNSSNVAQPQLGAETF
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggaagaaaagcagtatacgtcactgacggttcctacggattatctccaacagtggtac
cagtccacccagcagcacccccaagctcaacatgtgatgcagtaccataacacgggccat
atgggtcattacatggagggatccagagaggaccgggtcatgacggagctgtcggtccac
caggacctccctgtccaccaagagctggacttccatcacgacttccatcaagagccaata
gtccaacacgatcagcctgtggatacatcacaagctccgacgccagggaagagaaagaga
ggtcggcctcccaaacagaagccgggggagggccaaccgcaggaggactacgatcaggca
gaggccctgaagaaagccaaaaggacccttaaccgtttcaatggcatgtcagtggatgag
gttatggccaaaaccctgccagatattattgaccacaacctggacattttgataattggt
atcaatccaggactgttgtcagcctacaagggacgacattacccaaacccaggaaaccat
ttttggaaatgcctgttcctctctggtcttactgatgagcagctcaaccacatgcacgat
ctgagcctgccggagaagtatggcattggctttaccaacatggtggagaggacaacgcca
ggaagcaaagacctctcaagcaaagagtttcgtgaaggaggccggcaattggtggagaag
ctgaagaaatacaagccactaatcgcagctttcaacggaaaatgtatttacgaaattttc
agcaaagagatctttggagtgaaggcaaagaaacttgagtttggcttacagccgtacaaa
atcccagaaaccgaaacagtgtgctacttgatgccttcgtcaagcccccgctgtgcccag
ttcccccgcgctcaggacaaggttcacttctacatcaagctgaaggagctacgggacaag
atcaaaggtgtggtctcagtggcccgcgaggtgcaagagactgagtaccacttcgacttg
ggacttgccaaagaggatgctaagaggatgaccatcaaggaggagcaggtggatcctgag
tacgagacctgcgacggggagcgcgaggaggcaaggcaaagcacaagctactgcaacatt
tcctccaccaaagagaccgcaatgcccagtaaggaccaagcccaagcccaagctacacca
ttgaaccacatgccatacgaccagtggatgacacagtcgtttgcagaccagataccggac
attagctgtaacagtagcaatgtagctcaacctcagttgggagcagaaaccttttga
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