Oncorhynchus tshawytscha (Chinook salmon): 112221492
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Entry
112221492 CDS
T05605
Name
(RefSeq) agrin isoform X1
KO
K06254
agrin
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04512
ECM-receptor interaction
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
112221492
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112221492
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
otw00535
]
112221492
Proteoglycans [BR:
otw00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
112221492
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Laminin_G_1
Kazal_2
Laminin_G_2
Kazal_1
EGF_laminin
SEA
EGF
Laminin_G_3
Kazal_CFAI
hEGF
Motif
Other DBs
NCBI-GeneID:
112221492
NCBI-ProteinID:
XP_042159508
LinkDB
All DBs
Position
LG22:1881136..2155378
Genome browser
AA seq
1829 aa
AA seq
DB search
MTSCHYPTPPPERDRMYQHKVSLVVRYFMIPCNICLILLATSTLGFAVLLFLNNYKPVHF
TPAQPPDDCRGMLCGFGSVCERDAADPSKTECVCKKMVCPSVVAPVCGSDSSTYSNECEL
EKAQCNTQQRIKVLRKGPCALEDPCSEVTCSYGSTCIQSSDSLSAKCMCPLSCDGKPEQV
VCGSDGQDYRNECELYKQACHTQKNFRLQHQGYCNPCKDSENSLNVACRVEPRTRQPLTF
APPESCPPVNEPLCASDSQTYESECHMTRTGMQKGIELRKIHPGRCKKQEMCKVECKFNG
VCQVERLGVRCSCEPIQCDGTYKPLCGKDGRSYVNDCERRRAECLAKAHIPVKQQGPCDL
HAPSPCLAKACEFGAVCVVKNDKPVCECPEACLQTPDPVCGSDGHSYGSHCEMRATGCAL
QREIHIQHRGPCDEACANCSFGAICDGQSGSCVCPQECVESHQPVCGSDGSTYDSECELH
VRACSKQLDLRVLAQGECKTCGSAVCAWGAQCIQNKCECTQCQGQALSPVCGSDGMTYDN
TCELGLASCVLKKKIEVAKLGSCEEECGSGGSASGVESCEQDRCRTFGGSWDEDTEDDRC
VCDFDCNRMPRNLVCGSDGKTYSNECEMKKASCERQGHLLIQNQGPCTAISATSPPELTA
PQRCIQSVYGCCRDNKTAALGVGLAGCTSTCQCNPYGSYKGTCDPGSGQCSCKPGVGGQK
CDRCDPGFWNFRGIVTENLSGCTPCNCDAVGSVRDDCEQMSGLCSCKTGVKGMKCNVCPD
GSKMGRSGCDTGADAPTSCNELDCKFGASCVEVNGQAHCECPSPDCDEMNKTKVCGSDGV
TYADQCQLSTIACRRDKHIRVEHFGQCADPTATTIPTAEDRSSCDNTPFGCCPDGKTASS
SPEGAKCPSTMRFSGFLHLDQVEGQEVFYTPEMEDPKSELFGETARSIESALNELFRKSE
VQKDFMSVQVRSLAPSNSILAFIEAHFNPETRFTVQDIEGALLKQLKAAKETAIVVKKPE
EENIRFNNYGLFSLPYFTTSTTATATTPTASTATSTTLPPPNSPFITRRPLGTTRRPYTS
RRTTAAPTMAPTPTTTITPLHRTSPVPHYTNAQQPCDSHPCRHGGTCEDDGADFTCICPA
GRGGAVCEKLITYFIPSFGGKSYLAFDTMRAYHTVRIAMEFRVAEMTGILLFNGQDGKKD
FLSLTLVNGKVELKFNTGSGTGTLVSKVQVKQGRWYQLVVTRNRRNAVLSVDDELHIEGA
SPPGTDGLNLDTHLFIGGVPEDMMTDVKERTSTGTGLVGCVRTLDVNNLVYNLQEKGGNV
LYGTGVGECGNNPCQPNPCKNSASCQVKEAEMFHCKCINSYSGPTCADTHNPCEPNRCHP
SSQCQVQPEGGYKCECPMGREGLHCEQVSDKKGAYMPFFSGDSYLELKGLHTYGHNLHQK
VSMTVVLMANESNGMIFYNGQKTDSKGDFISLSLNDGILEFRYDLGKGPAVIRSKDKIKM
GVWNTVNLERASRKGEININGKDPVRGESPKSRKNQHTALNLKESLFVGGAPDFSRQARA
ASLKDGFKGAIQKITLMGTPILRQENALHSSDVAMFKGHPCSRDPCHYGGLCNPMLESYE
CVCPHGFTGTACQNTILEKSAGESESIVFDGRTFIEYHNAVTKSEKALLVNKFELSIKTE
ATQGLVLWSGKGVERSDYIALAIVDGRVQMTYDLGSKPVVLRSTVRVNTNSWICIKASRA
RRDGSLQVGNEAAVTGSSPLTATQLDTDGALWLGGLEELMVARRLPKAYSTGFVGCVKNV
VVDGMGLHLVEDALNSPKILHCSASEDKK
NT seq
5490 nt
NT seq
+upstream
nt +downstream
nt
atgaccagctgccattaccccacgccgccgccggagcgggaccggatgtaccaacacaag
gtgtccctggtggtgcgctactttatgatcccctgtaacatatgtctcatcctgctggcc
acctccacgctgggcttcgccgtgctgctcttcctcaacaactacaaacctgttcacttc
acaccagcccagcctcctgacgattgcagaggaatgctatgcggcttcggttcagtatgt
gaacgtgatgcggctgacccctccaagacagagtgcgtctgcaagaagatggtgtgtccg
tcggttgtggcgcctgtgtgtggctcggactcctcgacctactccaatgagtgtgagctg
gagaaggcccagtgcaacacgcagcagcgcatcaaggtgctgcgcaaaggaccctgtgcc
ctggaggacccgtgcagtgaggtgacctgcagctacggcagcacctgcatccagtcatcg
gactccttgtcggccaagtgcatgtgcccgctgagctgcgacggtaagcccgagcaggtg
gtgtgtggcagtgacggccaagactaccgcaacgagtgcgagctctacaagcaagcctgc
cacacccagaagaacttccgcctgcagcaccagggatactgcaacccctgcaaagacagc
gagaacagtctgaatgtggcgtgccgggtggagccacgtacccgccagcccctgaccttt
gcccccccggagtcctgcccacctgtcaatgagccactgtgcgccagtgacagccagacg
tacgagagcgagtgccatatgacgaggacgggcatgcagaagggcattgaactcaggaag
atccacccgggccgctgtaagaaacaagagatgtgcaaggtggagtgcaagttcaatggc
gtgtgccaggtggaacgtctaggcgtgcgctgctcctgcgagcctatccagtgcgacggg
acctacaagccgctgtgcggcaaagacggacgcagctacgtcaacgactgtgagcggcga
cgggccgagtgcctggctaaagcccacatccccgtcaagcagcaaggcccgtgtgatctc
cacgcgcccagcccgtgcctggcaaaggcctgcgagtttggcgctgtgtgcgtggtgaag
aacgacaagcccgtatgtgagtgccccgaagcctgcctccagacacccgacccagtgtgc
ggcagtgacggccacagctacggcagccattgtgagatgagggccacgggctgcgccctg
cagagggagatccacatccagcaccgaggaccctgcgacgaggcgtgtgccaactgttca
ttcggggcgatctgcgatgggcagtcgggcagctgtgtgtgcccgcaggagtgcgtggag
tcccaccaaccggtgtgcggcagcgacggctccacctatgacagcgagtgtgagctccac
gtgcgcgcctgttccaagcagcttgacctgcgtgtgctcgcccagggagaatgcaagacc
tgtggcagcgctgtgtgtgcctggggggcccaatgcatccagaacaagtgtgagtgcacg
cagtgccagggccaggctctctcgcctgtgtgtggcagcgacggcatgacctatgacaac
acttgcgagctgggcttggcatcctgcgtcctcaagaagaagatcgaggtggccaagctc
ggcagctgcgaagaagagtgtggttcaggagggtcggcctcaggtgttgagagctgtgaa
caggataggtgtcgtacgtttggaggctcgtgggacgaggacacagaggatgaccgctgt
gtctgtgacttcgactgcaatcgcatgcctcgcaacctggtgtgtggctcagatgggaag
acctacagcaacgagtgtgagatgaagaaggccagttgcgaaaggcaagggcatctgctg
atccagaatcagggaccctgcacagcgatttcagccacctctccaccggagctgacagcg
ccacaacgctgcattcagtcagtctacggctgttgccgcgacaacaagacggcggccctt
ggtgtgggactcgctggatgcaccagtacgtgccagtgtaacccgtatggctcctacaag
gggacgtgtgacccgggcagcggccagtgctcctgtaagcccggcgtcgggggacagaag
tgcgaccgctgtgatccaggcttctggaacttccgtggcattgtcacagagaacttgagc
ggctgcacaccgtgtaactgcgacgcagtgggctcggtgagggacgactgcgagcagatg
tcaggcctgtgctcctgcaagactggagtgaagggcatgaaatgcaatgtgtgccccgac
ggcagtaagatgggcaggagcggctgcgacacaggtgctgatgccccaacctcatgtaat
gagctggactgcaagtttggtgcgtcttgtgttgaggtcaatggtcaagcccactgtgaa
tgcccctcgcccgactgtgacgagatgaacaagaccaaggtgtgtggctctgatggggtg
acctacgctgaccagtgccagctgagcaccattgcctgtaggcgggacaagcacatcaga
gtggaacactttggccagtgtgcagaccccacagccaccaccatccccacagcggaggac
cgctcgtcgtgtgacaacactcccttcggctgttgtcctgatggcaagacggcttctagc
agccctgagggagccaaatgcccctccaccatgcggttcagcggcttcctgcacttggac
caggtggagggccaggaggtcttctacacccctgagatggaggatcccaagtctgagctg
tttggcgagacggccaggagcatcgagagtgctctgaacgagttgttccgtaaatcagag
gtgcagaaggacttcatgagtgtccaagtccgcagcctggcgcccagcaactccatcctg
gccttcatcgaggcccacttcaacccagagaccaggttcacggtgcaggacattgaagga
gccctgctcaagcagctgaaggcagccaaggagacagccattgtggtgaagaagccagag
gaggagaatattcgcttcaacaactatggcctgttctccctcccctacttcaccaccagt
accacagctaccgccaccacccccactgccagcactgccaccagcaccacgctgccgccc
cccaactcccctttcatcacacgccgtcccctgggcaccacacgccgtccctataccagc
cgccggaccaccgccgcccctaccatggcccccactcccaccactactatcacccccctc
cacaggaccagccctgtgccccactacaccaatgcccagcagccctgtgactcccacccc
tgccgccacggcggcacatgcgaggacgacggcgccgatttcacctgcatctgccctgcc
gggagagggggtgctgtctgcgagaaattgatcacatacttcatcccgtcattcgggggt
aagtcctatctggccttcgacaccatgagggcctatcacacagtccgcatcgcaatggag
ttcagggtggccgagatgacgggcatcctgctcttcaacggccaggatggcaagaaggac
ttcctgtctctcaccctggtcaatggcaaggtggagctcaagttcaacaccggctcgggc
acaggcacactagtcagtaaagtccaggtgaagcagggtcgctggtaccagctggtggtg
acgaggaaccggcgcaacgccgtgctgagcgtggatgacgagctccacatcgaaggcgcc
agcccccccggaaccgacggcctcaacctggacacacacctcttcatcggaggggtgccc
gaagacatgatgacagatgtgaaggagaggacctccaccggtacaggtcttgttggctgt
gttcgcacgctggacgtcaacaacctggtgtacaacctgcaggagaagggtggcaacgtg
ctctacggcaccggcgtaggcgagtgcggcaacaacccgtgccagccgaacccctgtaag
aacagcgcctcctgccaggtcaaggaggctgagatgttccactgcaagtgcatcaacagc
tactccggtccgacgtgcgccgacacccacaatccatgcgagcctaacagatgccaccca
tcgtcccagtgtcaggtgcaaccagaaggagggtataagtgtgagtgtcccatgggccgc
gagggactccattgtgagcaagtgtcggacaagaaaggggcctacatgccgttctttagt
ggtgactcttacctggagctgaagggattacacacctacggtcacaatctccaccaaaag
gtcagcatgacggtggtgctcatggccaacgaatccaacggtatgatattctacaatggc
cagaagaccgacagcaaaggggacttcatctccctctccctcaacgacggcatcctggag
ttccgttacgacctgggcaagggccccgccgtcatcaggagtaaagataagatcaagatg
ggtgtgtggaacacagtgaatctggagagggccagtcgcaagggagagatcaacataaac
ggaaaggacccagtcaggggagagtcgccgaaatcacgcaagaaccaacacaccgctctc
aacctgaaggagtctctgttcgtgggtggtgctcctgatttcagccggcaagcgagagcc
gcctcgctcaaagatggcttcaagggggccattcagaagatcaccctgatgggcactccc
atcctgcggcaggagaacgcattgcactccagtgacgtggcaatgtttaagggccacccg
tgcagccgggatccctgccactacgggggtctctgcaaccccatgcttgagagctacgag
tgtgtgtgcccccacggcttcacgggcacagcctgtcagaacaccatcttggagaagtcc
gccggggagtcggagtccattgtttttgacggccggacttttatcgagtaccacaacgcc
gtcaccaagagtgagaaggccctgctggtgaacaaatttgagctgagcatcaagacggag
gccacacagggcctggtgctgtggagcggcaagggcgtggagcgctctgactatatcgcc
ctggccattgtggatggccgcgtgcagatgacctatgacctgggctccaagcctgtggtg
cttcgctcgacggtgcgcgtcaacactaacagttggatctgcatcaaggccagcagagca
cgtagggacggatctctccaggtgggcaacgaggcagcagtcacgggatcgtcgcccctg
acagccactcagctggacacagacggagctctctggttgggtggcttggaggagttgatg
gtggcccgcaggctgcctaaggcctacagcacgggcttcgttggctgtgtaaagaatgtg
gtggtggacggcatggggcttcacctggtggaggacgcactcaatagccccaaaatatta
cactgttccgcctctgaggacaaaaaatag
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