Oncorhynchus tshawytscha (Chinook salmon): 112223231
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Entry
112223231 CDS
T05605
Name
(RefSeq) protocadherin-15-like
KO
K16500
protocadherin-15
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
otw03037
]
112223231
04515 Cell adhesion molecules [BR:
otw04515
]
112223231
Cilium and associated proteins [BR:
otw03037
]
Primary cilia and associated proteins
USH complex and associated proteins
112223231
Cell adhesion molecules [BR:
otw04515
]
Cadherins
Protocadherins
112223231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
ECD
PCDH15_12th
Cadherin_FAT4_N
Cadherin_CELSR2_9th
Fibulin_C
Cadherin_2
Big_9
Ig_SMCHD1_6th
Motif
Other DBs
NCBI-GeneID:
112223231
NCBI-ProteinID:
XP_042161450
LinkDB
All DBs
Position
LG24:complement(21054120..21362211)
Genome browser
AA seq
1719 aa
AA seq
DB search
MQKRSWHFKWLGIGLLLLATCCLSQDTDECKLSRTGPPATIVAIDEESPNGTLLVENMQI
QGRVEDPGRTISLSLRDNYNHWVILDPVRQRLYLNSTGRALDRDPPSYIHSIVVQVQCTN
ELVGTVILHEVRIVVRDRNDNAPRFQQPRYYVAINELTPVGTTIFSGFTGNNGALDIDDG
PNGQIEYIIQYNPTDPAANRTFDIPLTLSGSVVLRERLNYEEITRYLVLIQANDRAPYPN
ERRTATTTLTVDVLDGDDLGPMFLPCSLVDNTRDCSPLTYRVHILELTDPSKVNPVNVTP
VIQAVDQDRNIQPPSQRPGILYSILIGKPETYVDFFSLNRTTAELQLLKPLIRDLYNRFD
LVIKAEQDNGHPLPAFANLHIEVLDENNQSPFFLEATYQGFITESAPVGTTVFTDASLTT
PLGINVLDNDIEETKDPMLQISLDNYNTIFTVTPSGITRYLTLLKPVDREEQHSYTFTMV
ASDGVQESTPVAINITVIDANDNTPTFPNTSYSVNVYTDMQPGETILQLTALDADWGPNG
LVTYKILAGDQGHFIINNRSGVITVVPGVSLAVGRSYTLTVKAVDSGPGSQRRSSITTVY
IEVLPPNNQSPPRFPHFLYSLEVSEAMRIGATLLSLQATDRERDVITYSIQNGDPHHVFE
LSQMSGLLVLRKPLDRETEDRYTLVVTASDGRPEGTSTATVNIVVTDVNDNDPVFDPLLP
QNLTVTEEEANCFVGQVKATDPDVGVNGQVCYRLVNHADLFRINSNGTISTAVPLDREVR
GQYDLMVEAEDGAEEDPRRTTLTLSVTVVDVDDNSPVFSQPSYMVNLPENSPKNTVILQF
TAKDADLDSNITFRIRTQEARQLFAVNPVTGELSVLQTLDFETLAASDHTYTFVVEALDN
EESMPPGLATVTVKIMDMNDYSPVFSQVVYRGMVAPNAVKGTVVATVQAEDLDPPGTPAS
RVRYRLDLNEEPYSGSIFDVDEVTGSVITRVNLNEEPNLVFSLVIVAYDDGEPMKVNKTL
VVITVLQPSIIPVFTQEEYRFPPVSEKAKVGKLVGVILAAAVNQTIVYSIAEGNEGGVFR
LNNNTGVISTAKPLDYEANGSYSLRVEADSMGLAESNLRAPSKTNTARVFIDVLDENDHS
PVFTKPLYLGGVAEDAKTFTSVLQVQALDKDTGNYSSMQYRLVIPPTTNGKDGFVIEPYT
GVIKTAIMYRNMRRSYFKFEVVATDNYGQGGLSNKAEVVVSVVNLLDMQVVVSNVAPTVV
EQNKDKLLGVLERYVQDQIPGAKVVVESIGPRRFGDGFEQEDYSKSDLMVYAVDPLTNRA
ISRQELFKFLDGKLLDINKEFQPYLGRGGRILEIRSPDVVTSVKKAMQTVGYTEGALLAL
AVIIILCCIPAILIVIITYRQFKERQAECAKTARIQMTLPTGKSVVAATNNLYEELGDNT
MRGYGHHEQQQLLRPSLLRPEELSIESGIDPGQDYYTQDYYNCDHGYELPQYGSRRKLIS
PTGLYDEYGEVIVEDDGSYYYCSPQESDGEYGRKKRIKLVVDREYETSSTGEDSAPEPQR
NRLSNLTNHSNVNGSVYLAQNGSVIRTRRAAHSNNIKVNSPVRLGKHFKKLDKLAVTHEE
RLPLNSPVATTSSADKNLNTQPSSGSLASSTTGAESIASKSNIAKARSERTWDAEEQEST
VDNEDVREPLESQSDRTYSDEEELWMGPWNNLHIPMTKL
NT seq
5160 nt
NT seq
+upstream
nt +downstream
nt
atgcagaagaggtcatggcacttcaaatggttagggataggacttctgctgttagctact
tgttgcctgtctcaagacacagatgaatgcaaactctccagaactggtccacccgccacc
attgttgccatagatgaagagagccccaatggaacacttttggttgagaatatgcaaatc
caaggccgagtggaagacccaggcagaaccatctctctctccctccgagacaactacaac
cactgggtcatactggacccggtcagacaaaggctgtacctcaacagcaccggcagggcc
ctcgaccgagaccccccgtcctacatccattccatcgttgtccaggtccagtgcaccaat
gagctggtcgggaccgtcattttacacgaggtgcgcattgtggtgagggatcgcaatgac
aacgcaccccgattccagcagcctcgctactatgtcgccataaatgagttgaccccagtt
ggcaccaccatcttctccggcttcactgggaataatggagctctggacattgatgacggc
cctaacggacagatcgaatacatcatccagtacaacccaactgacccggcggccaacagg
acgtttgacatccctctcaccctctccggctcggtggtcctgagggagaggctcaactac
gaggaaatcacccgctacctggttctcatccaggccaatgatcgcgccccgtaccccaac
gaacggcgcactgccaccaccaccctgactgtagacgtgctggacggggatgacctgggg
cctatgttcctgccctgctctctggtcgacaacacacgtgactgcagccccctcacctac
cgggtccacatcctggagctcactgacccaagcaaagtgaaccctgtcaacgtgactccc
gtcattcaggccgtggaccaggacaggaacatccagcctccgtcacagaggccaggcatc
ctctactccatcctcattggcaagcctgagacgtacgtcgacttcttctccctgaacaga
accaccgccgagctgcagctcctcaaaccgctcatcagggacctgtacaatagatttgac
ttggtaatcaaggcagagcaggacaacggccaccccctgcctgcatttgctaacctccac
attgaggttctggatgagaacaaccagtcaccattcttcctggaggccacataccagggc
ttcatcaccgagtcagcaccagtgggtaccacagtgttcaccgacgccagcctcaccacc
cctctggggatcaacgttctggacaacgacattgaggagacgaaagatcccatgctgcag
atatccttggacaactacaacacaatcttcacagtgacaccttcagggattacccgctac
ctgacactgctgaagcccgtggaccgtgaagagcagcacagctacacgttcacaatggtg
gcttctgatggagttcaggagagtactccagtggccattaatatcacagtgatcgatgcc
aatgacaacacaccgacctttccgaacacctcctacagtgtcaatgtttacacagatatg
cagcctggggaaacaatattacagctgacggctctggatgctgactggggtcccaatggg
cttgtgacctacaagatcctggcgggggatcaaggacacttcatcatcaataaccgctcg
ggagtgatcaccgtggtgcctggcgtctccctggccgtgggacgttcatacacgctgacc
gtgaaggctgtggatagtggtccggggtcccagaggaggagctccatcaccactgtgtac
attgaggtgctcccccccaacaaccagagccccccacgctttccccactttctctacagc
ctggaggtcagcgaggccatgaggatcggagccacactcctcagcctgcaggcaacggac
cgtgaaagagacgtcatcacctacagcatccagaacggggatccccaccacgtctttgag
ctctcgcagatgtcagggctgttggtcctgaggaaaccactggacagggagacagaggat
cgctacaccctcgttgtaactgcctcagatggccgtccagaagggacctccacggccact
gtgaatattgtggtcactgatgtcaacgataatgaccctgtcttcgatccgctcctgccc
caaaacctaaccgttacagaggaggaggccaactgttttgtgggccaagtaaaggcaaca
gatccagacgtgggggttaatggccaggtgtgctaccgactggtcaatcacgccgacctc
ttcaggatcaactccaacggcaccatctccaccgcagtgcctttggatcgagaggtcagg
ggtcagtatgacctcatggtggaggcggaggacggagcggaggaggaccccaggaggacc
acactgactctgtcggtgaccgtggtggatgtggatgataacagcccggtgttctcacaa
ccatcctatatggtcaatctgccggagaatagtcctaagaacacagtcatcctgcagttt
accgccaaagacgctgacctggactccaacatcactttccgtatccggacgcaagaggcc
agacaactttttgctgtcaacccagtgactggagagctctctgtgctgcagacgctagac
tttgagaccctggcagcctcggaccatacctacaccttcgtggtggaagccctggacaat
gaagagagcatgcccccaggcctggccactgtcactgtaaagataatggatatgaatgac
tactctccagtgttcagccaggtggtgtacaggggcatggtagctcccaacgcagtcaag
gggaccgtggtcgccacggtacaggcagaggacctagaccctcctggcacccctgccagc
cgtgtgcgttacagactggacctgaatgaggaaccttacagtggcagcatctttgacgtg
gatgaagtcacaggcagcgtcatcacacgagtcaacctcaatgaagagcccaatctagtg
tttagcctggttattgttgcctatgacgacggggagccaatgaaagtcaacaagaccctg
gtggttatcactgtcctgcaaccctccatcataccagttttcacccaggaggaatacaga
tttccccctgtgagtgagaaggctaaggtggggaagctggtcggtgtcatattggctgca
gctgtcaatcaaacgatcgtctattccatagcggagggcaacgagggaggtgtgttcagg
ctcaacaacaacaccggggtgatctcaacggccaagcccctggactatgaggccaacggc
agctacagcctcagagtggaggctgactccatggggttggccgagtccaacctccgagcg
ccctctaagactaacacagcgagggtgttcattgatgttctggatgagaatgatcactct
cctgtctttaccaaacccttgtacctgggaggagtggccgaggacgccaagacattcact
tccgtactacaagtccaggccctggacaaggacacagggaattacagctccatgcagtac
aggctcgttatccctcccaccaccaacggcaaggacggctttgtcatcgagccctacacc
ggtgtcatcaagactgccattatgtacaggaacatgcgccggtcttacttcaagttcgaa
gtggtcgccactgacaattacggccaggggggactgagcaacaaggcagaggtggtggta
tccgtggtgaatctgctggatatgcaggtggtggtgtccaacgttgctcctacagtggtg
gaacagaacaaggacaagctcctcggggtcctggagcgctatgtgcaggaccagattcca
ggggccaaagtggtggtggagtccatcggaccgcggcggtttggcgacggcttcgagcaa
gaggactactccaagtcagacctgatggtgtatgctgttgaccctctgaccaacagggcc
atttcacgccaagagctgttcaagtttctggacgggaagctgctggacatcaacaaggag
ttccagccgtacctgggccgaggagggaggatcctggagatacgctcccctgacgtggtg
accagcgtgaagaaggccatgcagaccgtgggctacacagagggggcgctgctcgccctc
gccgtcatcatcatcctctgctgcatccccgccatcctcatcgtcatcatcacctacagg
caattcaaagagagacaggcggagtgtgctaaaactgcccggatacaaatgaccctccct
actggcaaatcagtggttgctgccaccaacaacctgtatgaagagctgggggacaacacc
atgcgcgggtatggacatcatgagcaacagcagttgctcaggccctctcttctgagaccg
gaggagctctctattgagtctggtatcgatcctggccaggactattacacccaggattat
tataattgtgaccatgggtatgagctgcctcagtatggcagtcgcaggaagttgatatct
ccgacaggcctgtatgatgagtacggagaggtgattgtggaagacgatgggagctactac
tattgcagtccacaggagtcggatggagagtacgggaggaagaagcggatcaagctggtg
gtggacagggagtatgagaccagttccacgggggaggacagtgctccggagccccaaagg
aaccggctgtccaatctgaccaaccacagcaacgtcaacggcagcgtgtacctggcgcag
aacggctcggtcatacgcacccgccgggccgcccactcaaacaacataaaggtcaactcc
ccagtgcgcctgggcaagcactttaagaaactagacaaactggcggtgactcacgaggag
agactgccgctcaacagccccgtggcgaccacgtcctcggccgacaagaacctaaacacc
cagccctccagcggctccctggcctccagcaccacgggagccgagagcattgcgtccaag
tccaacatcgccaaggccaggagcgagagaacgtgggacgcggaggagcaggagtcaaca
gtggacaatgaggatgtgagagaacctttagaatctcagagcgatcgcacgtattccgat
gaggaggagctatggatggggccctggaacaatctgcacataccaatgacaaaactgtga
DBGET
integrated database retrieval system
