Oncorhynchus tshawytscha (Chinook salmon): 112223766
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Entry
112223766 CDS
T05605
Name
(RefSeq) breast cancer type 1 susceptibility protein homolog isoform X3
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03440
Homologous recombination
otw03460
Fanconi anemia pathway
otw04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
112223766
09124 Replication and repair
03440 Homologous recombination
112223766
03460 Fanconi anemia pathway
112223766
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
otw01009
]
112223766
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
otw04121
]
112223766
03036 Chromosome and associated proteins [BR:
otw03036
]
112223766
03400 DNA repair and recombination proteins [BR:
otw03400
]
112223766
Enzymes [BR:
otw01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
112223766
Protein phosphatases and associated proteins [BR:
otw01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
112223766
Ubiquitin system [BR:
otw04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
112223766
Multi subunit type E3
BRCC complex
112223766
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
112223766
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
112223766
BRCA1-A complex
112223766
BRCA1-B complex
112223766
BRCA1-C complex
112223766
BRCA complex
112223766
FA (Fanconi anemia) pathway
Downstream FA components
112223766
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-Nse
zf-RING_5
PTCB-BRCT
zf-ANAPC11
zf-MIZ
RTT107_BRCT_5
zf-RING_4
U-box
zf-rbx1
YicC-like_C
zf-RING_10
TRAF3_RING
Motif
Other DBs
NCBI-GeneID:
112223766
NCBI-ProteinID:
XP_024242722
LinkDB
All DBs
Position
LG24:10517307..10561680
Genome browser
AA seq
1555 aa
AA seq
DB search
MNTMMSPKAEDVRQGISVICEILQCPICLELMSTPVSTKCDHQFCKFCIMKLLDSSRRKE
ANCPVCKTKITKRSLQESPGFQKLAEGLQNMVQAYEHDTCTNYFTGMSQVRRHMSVTETV
QKKNGHDVSSDDVWASDRADDEDHEFSMPCSSTIAAKDGFATLMGLEDSCPVISDEGFDS
SLGDIPPATEKHTDDSKATSTTEKQKPALEAEIPEVVERAPSRPQKLVKKISTHPQDPPC
CPEKVRNHPVRRSTRNNKRESLTEMIDQNQKKSLEKVSEWLMNNSSTEVNSEKEKNTEGS
YDSLAGSCSPSSPLEDNLRNKDQSPNREERGKCLEELVFGAVYKRDRRGNRSFSPQNIAI
TDPPPPCPAEELQILKKIAKRRMRNKLTPADFVKRPRSEENEDSVMDDQPEMTETQEDYP
NEHPKDTEENKLIDLTGELNSNSSDKQGEELDELPEGDNKENEDVEDSPVFDVPLREPGR
KSNKKIHGRWQDVDGDLQGNVKSENNEQKKPAKKKGENIKVEKSKATKSLVLVGVGEGGS
DSKMPKSRPSGQTEVQIESYPSSEDPGSPIMRRTRRSRRLQLFTEEVQGSNKIGTATSTK
VVVLDSDCNEMQQSKEAKADTDKDNVACLQNQNTEKAVRKNGCVLDEEMGGIESLDSSEK
RLCEMIDSQKVNQVEESFVEVPSIGSPCHADVACSVTMVPSSISTPEASGSCAVPESVNQ
SNPVIKPLDDLRSNVPQETSASQAKCIDLDEDVRNDSELDTEQLLKSFKATKRKSFHLGS
PNIKRSSFWSNKEITTLTKTQENKHVGTDMEAGNGQGFSRTTECPTVQQESEKGTILENS
CCSDLSPPSSSLNNISQEKAQRNRKRLRKSILTRPPQDLVDSSKPDTSGKTQKQILSRLS
GNSSKSALSPNKVTKSQMESPHQAVGSGLLFPAFGASKEDLPDPTPVASKQLKVPKSQQL
YKVEGSVSKSPTELESSHSVGSEMAVELNKTCPENMTGNMANTESSLTPDGLLPIIPSVV
IQEAQRTKRCGVVSLHSPIKSTLKRRKAQRLESSSESNCSGEEEELPSLAQIFRPSTCPP
TAEEEEEESVTLLKDHARGQGSYREDGQRASSPPMCPSPEWVTTSQASVDLFGTPEEAEG
MAGDTGLTQESSQFSSECIATQQKVAMQEELRRLERMMALVSEALQEKEEEEPTGAKVYP
GAPDPPALLQPDRSTVSSGLDLQATLPCGQGTRKRSASREGAQNIEGNAASPPPGLGDSE
GLGPTPTTPCRTKHEGPGGTGAGRLGRGSGRSLRSSMRARPNQVSTVVRVHSGTNAPSAG
LEVQDTPVVIQPNNTHPSTHTPLREPAGVRLVLVASGLSAPEQSMVKKFAKRMGGSVCSQ
VTSETTHVIMNTDGNLVCERTLKYFLGIAGRKWVVSFQWISECFKQGTVLNETSFEVRGD
VVNGHDHQGPMRARTTGDTSLLMKDYEICFQGPFTDMTTGQMEWMVELCGATVVQEPLLF
TGELKTRQLIVVQPGSDQSPMNYQALQRIATVITRGWLFDSVATYTLQSLDNYRT
NT seq
4668 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccatgatgtccccgaaggctgaagatgtcagacaggggatctctgtcatctgt
gagatcttgcagtgtccaatatgtttggaattgatgagcacacctgtgtctactaagtgt
gaccaccagttttgcaagttttgtataatgaagcttttggacagcagtaggagaaaggag
gccaactgtccagtttgtaagacaaagatcacaaaaaggagtttgcaggagagccctggg
ttccagaaattggccgagggattgcagaatatggtccaggcctatgaacatgacacctgc
acaaactacttcactggaatgtcccaggtgaggagacatatgagtgtcacagagactgtg
cagaagaaaaacggccatgatgtctcatctgatgacgtatgggctagtgaccgtgctgat
gacgaggatcatgagttttcaatgccctgctcgtcaactatagcagccaaggatggcttt
gcaacgctcatgggtcttgaagattcttgtcctgtcatttcggacgaggggtttgacagc
agcctaggtgacatacctccagccactgaaaagcataccgatgactctaaagctacctcc
accacagaaaaacagaagccagcattagaggcagaaatacctgaggttgttgaaagagct
ccctcacgacctcaaaagcttgtaaaaaagataagcactcatcctcaagatccaccatgc
tgtcctgaaaaggtcagaaaccatcctgtcagacgatccacgaggaataacaaaagagag
tccttgaccgaaatgattgaccagaatcagaagaaaagtctagagaaagtctctgagtgg
ctcatgaataattcctcaacagaagtaaactctgagaaggagaaaaacacagagggctct
tatgactctttggcaggaagttgttccccctcctcacccttagaggataacctcagaaat
aaggaccagagtccaaacagagaagagcgtggcaaatgtcttgaggagctggtatttggg
gctgtttacaaacgggatcgaagagggaaccgcagtttttcaccacagaatatagcgatc
acagaccctccaccaccctgtccagctgaggaactccagatcctgaagaagattgccaaa
aggaggatgagaaataaactgacacctgctgactttgtcaagagaccaagatctgaggag
aatgaagacagtgttatggatgaccaaccagagatgacagaaacacaagaggattatccc
aatgaacacccaaaagatactgaagaaaataagttgattgacctgactggggagctgaat
tctaatagctctgacaagcaaggagaagagcttgatgagttgccggaaggtgacaacaaa
gagaatgaagatgttgaggacagtcctgtgtttgatgtgccactacgggaacctgggagg
aagtcaaataaaaagatacacggtaggtggcaggacgttgacggggatttgcaagggaat
gtaaagtcggagaataacgagcaaaaaaagcctgccaagaaaaaaggggaaaacatcaag
gtggagaagagcaaggcaaccaaatcgttagtccttgtgggtgtcggagagggtggaagt
gactctaagatgcctaagagcagaccgtcaggccagaccgaggttcagattgagagttac
cctagcagtgaggatccaggaagcccaatcatgaggagaaccaggaggagtcggaggctt
cagcttttcacagaggaagtacaagggagtaacaagatcggcactgcaacatccacaaag
gttgtcgttcttgattcagactgcaacgagatgcagcaatcaaaggaggcgaaagctgac
accgacaaggataatgtggcgtgtttgcagaaccaaaatacagaaaaggctgtcaggaaa
aacggatgtgttttagatgaagaaatgggaggtattgagagcttggactctagcgagaaa
agattgtgtgaaatgattgattcacagaaagtgaaccaagttgaggagtcttttgttgaa
gtcccaagtataggaagtccttgtcacgctgatgttgcttgttcagtgactatggtacca
agttcaattagtacccctgaggcaagtggctcatgtgccgtgcctgagagtgtaaaccaa
agtaatccggttatcaaaccattagatgacttgagatcaaatgtaccacaagagacgtca
gccagccaggccaaatgcattgatctagatgaggatgtccggaatgacagtgagctggac
actgagcaactgctgaagagcttcaaagccaccaaaaggaagtccttccaccttggtagt
ccaaatatcaagaggagttccttctggtccaacaaggagattacaacacttacaaagact
caagagaacaaacatgttggcacagatatggaagcaggaaatgggcagggattttcaagg
acaacggagtgtcccacagtccaacaggaatctgagaaagggacaatattagaaaattct
tgctgtagtgatttgagcccaccttcaagttccctcaacaatatttcacaagaaaaggcg
cagaggaatcgtaaaaggctcagaaaatccattcttaccagaccacctcaggatttagtg
gattcttcgaaacctgataccagtgggaagacccagaaacagattctgtccaggctttct
ggcaacagctcaaaaagtgccctcagtcccaacaaagtcacaaaaagccaaatggaatct
ccccaccaagctgtgggttctggtctgctctttccagcttttggcgcctctaaggaagat
ctaccagatccgacacctgtagcttcaaagcaacttaaagtccctaaaagtcagcagcta
tacaaagtggagggcagcgtgagtaaaagtccaacagaactggagagtagccacagtgtt
ggatcagagatggcagtggagttaaacaaaacgtgtccagagaacatgactggaaacatg
gccaatacagagtcctccttgactccagatggcctccttccaattatcccatcagtagtt
atccaagaggcgcagaggactaaaagatgtggtgtggtcagcttgcactctcccatcaag
agcaccctaaagcggaggaaggctcagagactggagtcttcctcggagtccaactgtagt
ggggaggaagaggaactgccttcccttgcacaaattttcagaccgtcgacttgtccacca
accgctgaggaggaggaggaggaatccgtcacattgctcaaagaccatgccaggggacaa
ggaagctacagggaagatgggcagcgagcaagcagtcctcccatgtgccccagtcccgaa
tgggtcaccaccagccaggcatctgtggatctgtttggaacaccagaagaagctgaagga
atggcaggtgacactggcctgacacaggaatcatcacaattttcaagcgagtgtattgcc
actcagcaaaaggttgcgatgcaggaggagctgcggaggctggagagaatgatggcgttg
gtgtctgaagcgctccaggagaaggaggaggaggagcccactggggccaaagtctacccc
ggggccccagatcccccagcgctgcttcaaccagacaggtccacagtctcctcaggcctt
gatctccaggcgaccctgccgtgtggccagggcaccaggaagagatctgccagcagggaa
ggtgcccaaaacattgagggaaatgcagcctcacctccccctggtcttggagacagtgag
ggccttgggcccacccccaccacaccctgccgcaccaaacatgagggacctggagggact
ggagcagggcggcttggcagagggtcaggacggagcctaaggagcagcatgagagcgagg
cccaaccaggtgtcgacagtggtcagagtgcacagcgggaccaatgctccctcagctggg
ctggaggtccaggataccccggtggtcatccagcctaacaacacacacccatcaacacac
actccactgcgggaacccgctggggtcaggttggtgctggtagcatcaggactcagtgca
cctgaacagtcgatggtgaaaaagtttgccaagaggatgggaggcagtgtgtgttcacaa
gtgacgtccgagaccacccatgtcatcatgaacacagatggtaatctggtgtgtgagcgc
acgctcaagtacttcctgggcatcgcaggcaggaagtgggtggtgagcttccagtggatt
tccgagtgtttcaaacaagggacagtcttaaatgagacgtcatttgaggtgcgaggagac
gttgtgaacggacatgatcaccaagggcccatgagagcacggaccacaggggacacaagt
ctgctgatgaaggattacgagatctgtttccaaggccctttcaccgatatgaccactggt
cagatggagtggatggtggagctttgcggtgcaacagtggttcaagagcctcttctcttc
actggtgaactgaaaactcgtcagctcatagtggtacaaccaggctcggaccaatcacca
atgaactaccaagccctccagaggatagccacggtcatcacccgtggttggctatttgat
tccgtggcaacctacacccttcaaagcctcgacaactacagaacgtaa
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