Oncorhynchus tshawytscha (Chinook salmon): 112224857
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Entry
112224857 CDS
T05605
Name
(RefSeq) zinc finger protein GLI2 isoform X1
KO
K16798
zinc finger protein GLI2
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
112224857
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
otw03000
]
112224857
Transcription factors [BR:
otw03000
]
Eukaryotic type
Zinc finger
Cys2His2 GLI-like
112224857
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2_15
zf-C2H2
zf-H2C2_2
FOXP-CC
zf-C2H2_4
Zap1_zf1
zf_C2H2_ZNF292
Motif
Other DBs
NCBI-GeneID:
112224857
NCBI-ProteinID:
XP_042162481
LinkDB
All DBs
Position
LG26:36993180..37095724
Genome browser
AA seq
1510 aa
AA seq
DB search
METSALTATEKKEHTGSGLDGGSFSDLPKKPSPTTVTRGPHHLFPTFHTPIPIDMRHHEG
RYHYEPHPLHTMHGPQGLASSPVISDCISLIRLSPQAAGTGESPFSPPHPYINHHMEHYL
RSMHSSPTLSMISAARGLSPAEVTHEHLKERGLFSLPPPPPGANPTQYYHLMASGRSTYG
DLLLQTGAAAAAAAAAAHLPDYISPVDVSRFSSPRLTPRLNRKRALSISPLSDASIDLQT
MIRTSPNSLVAYINNSRSSSAASSSYGHLSVSGISPSFTFPHSINPMAYQQLFNQQRGLS
AFGHTPPLIQPSPSFAARQHAHAIAASALNNTHNTSSSESNQNAGSDPAVSSTVNPMITK
RHKVKTEAEGPRSISPCSQEHVLDLSEERDKDEWKQEPEAVYETNCHWDGCTKEYDTQDQ
LVHHINNDHIHGEKKEFVCRWDECSREQKPFKAQYMLVVHMRRHTGEKPHKCTFEGCCKA
YSRLENLKTHLRSHTGEKPYVCEHEGCNKAFSNASDRAKHQNRTHSNEKPYICKIPGCTK
RYTDPSSLRKHVKTVHGPEAHVTKKQRGDVPPRGPPKGNGENEANSKQSDRGMDGKMEAN
SITRGVEDCLQVKSIKTENSMTYQSSPGGHSSCSSEPSPLGSAHNNDSGVEMALHSGGSF
GELSALDDAPMVDSSTLSHGNSAGVGLGLRKGGGVTIKLENIKKERLKNVRDSCPWANSG
PQIRNTNTKLPPIPAVGSLLENSNMIASPGPYPGQRLGDLSSCEVTMLNQLNEQGRRYSN
TSTASSAYTSRRSSGISPCYSSRRSSEASQFSNRHNNISSADSYDPISTDLSRRSSEASQ
CGGGGGNGPSLLSLTPAQHYHLKAKYAAATGGAPPTPLPNMERMSLRTRMALYGDHSQER
ESSSNSNLFQPPAGAVPRRCSDIGYSNHSMMPHEVPGNLPRRASDPVRRPTLDPLSLPRV
QRYNSMNSMNPNSMMPPPSTDRRGLAMQGYTRSDGSLHRHPFAPRPPSISENVVMETMAV
DGLDHAGDEDMVLPEDVVQYLRSQNTGAGQSAGPVDYTNSQSHGFQVQGNMTSSQQPHQQ
FYGQRRMAMVDTNMPLSESGQAPLTLYKMSPGSGSQQQQYPTSPHMNNKNNMPVQWNEVS
SGTVDTTGTSRLTKQNLLRNNNLAVVQQRQNCGPFQGSMGSNSNQQVMPMSQNMELQGYT
QRSNAQGINSVQQQQRQPCSMNYTDQMSPQQGYGQDIVPIPNSGSGNGSLRPNYNGMALP
NGRVMATHNPDIQNYRSRTQVESYPPHMNQVEQLNYSSMPQQQAVHTGTRDGMQPRLPME
TKSMPRQHVRSSSTMQNRFLQSDFNHNTSEASPKKPGRTAAHNVGQKGNSNSNAPVLYTG
QIHMFESNNNLSFDSPMSPCTPQALVGTAITMASPGVNQVTSTVDSSGVEHAQIDFDAML
DDGDHSSLMSGTLSPGILTSLSQNSSRLTTPRSSVTLASVPAGIGNMAIGDMNSMLTALA
EESKFLNMMS
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atggagacctctgctcttacagccactgagaagaaggagcacacgggatcaggtctggat
ggaggcagcttctcagacctgccaaagaaaccgtctcctactacagttaccagaggtcct
caccatctcttccccacgtttcacacaccaatcccgatcgacatgcgtcaccatgagggg
aggtaccattacgagccacaccccctccacaccatgcatggacctcaaggcctagccagc
agcccagtcatctcagactgcatctctctgatccgtctgtcccctcaggcagcagggacg
ggggagtcccccttcagcccccctcacccctacatcaaccaccacatggagcactacctc
cgctccatgcacagcagccctaccctatccatgatctcagctgcccgtggactcagcccc
gcagaagtgacccacgagcacctgaaggagcgtggtctgttcagcctgccccctccccct
ccaggggccaaccctacacagtactaccacctcatggccagtggcagaagcacctacgga
gacctcctcttgcagaccggggcggccgcggcagcagcagccgcagcagcacacctgccc
gactacatcagccctgtggacgtgtccaggttctccagccccagactgacccccaggctg
aacaggaagcgagccctgtccatctcccctctctcagacgccagcatcgacctgcagacc
atgatccgtacctcgcccaactccctggtggcttacatcaacaactcacgctccagctct
gcagccagcagctcctacggacacctgtcagtcagcggcatcagtccgtcgttcaccttc
ccccactccatcaaccccatggcataccagcagctgttcaaccaacagagaggcctgagt
gcgttcggccatacccctcccctcatccagccctcgccctccttcgctgcccgccagcat
gcccacgccattgcagcctccgccctcaacaacacccacaacacctccagctctgagtcc
aaccagaatgctggtagcgacccggcggtgagcagcacagtcaaccccatgatcaccaag
aggcacaaggtcaagacagaagcagagggaccccggtccatatcaccgtgctctcaggag
catgttctggacctgagtgaggagcgggataaagatgagtggaagcaggagccagaggct
gtctacgagaccaactgtcactgggacggctgcaccaaggagtatgacactcaggaccag
ctcgttcaccacatcaacaacgaccacatccatggggagaagaaagagtttgtgtgccgt
tgggatgagtgctcgagagaacagaagcccttcaaagctcagtacatgctggtggtccac
atgaggagacacactggggagaagccacacaaatgcacatttgaaggttgctgtaaggcc
tactctcgcctggaaaacctgaagacccacctgaggtcccacacaggggagaagccgtac
gtctgtgaacatgagggctgcaacaaagccttctcaaacgcctcagacagagccaagcac
cagaaccgcacacactccaatgagaaaccctacatctgtaagatccctgggtgcactaaa
cgctacacagaccccagctctctcaggaagcatgtgaagacggttcacggaccagaggcc
cacgtcaccaagaaacaacgtggcgatgtgcctcccaggggtcctcccaaaggaaatgga
gagaatgaggcaaattccaaacagagtgatagagggatggatggaaagatggaagccaac
agcattactagaggagtggaggactgcctgcaggtcaagtcaatcaagaccgagaactca
atgacgtatcaatccagccctggcggtcactcgtcatgtagcagtgagccatcgccactt
ggcagtgcccacaacaatgacagtggagtagagatggccctgcacagcgggggaagcttt
ggggagctgagtgcactggatgacgctcccatggtggactcctccaccctctcccatggc
aactcagcaggggtggggcttgggctccgtaaagggggaggagtcaccatcaagctggag
aacatcaagaaggagaggctgaagaatgtgagggattcgtgtccctgggccaactctggt
ccacagatccggaacaccaacaccaagctgcctcctattcctgctgttggttcccttctg
gagaactccaatatgattgcttcacccgggccctaccctggtcagcgtcttggtgacctg
tcatcatgcgaggtgaccatgctaaaccagctgaatgagcagggccgccggtacagcaac
accagcactgccagttcagcctacaccagccgccgctcctcgggcatctccccctgctac
tccagccgccgctcttccgaagcttcgcagttcagcaaccgccacaacaacatcagttca
gccgactcctacgaccccatctccacagacctgtcccggagatccagcgaggccagccag
tgtggagggggtggtggaaacggccctagtttgctcagcctcaccccggctcagcactac
catcttaaggccaagtatgctgccgcaaccgggggagctccacccacacctctgcccaac
atggagcgcatgagcctcaggaccaggatggccctgtacggggaccactcccaggagagg
gagagctcctccaattccaacctgttccagccccctgctggagcagtgcccagacgctgc
agcgacattggctacagtaaccatagtatgatgccccacgaggtccctggtaacctgcca
cggcgagccagcgatcccgtccgcagacctaccttggacccactgtccctgcccagggtc
cagcgctacaacagcatgaacagtatgaaccccaactccatgatgcctcctccctctact
gatcgccggggcctggccatgcagggctacacacgatccgacggaagtctgcaccgccac
cctttcgccccgcggccccccagcatctcagagaatgtggtgatggagaccatggctgtg
gacgggctggaccatgcaggggacgaggacatggtgctgcctgaggatgtcgtacagtat
ctcaggtctcagaacactggcgccggccaatcagcaggccccgtcgactacaccaacagc
caatcacacggcttccaggtccaagggaatatgacctcctcccagcagccccaccagcag
ttctatgggcaaaggaggatggccatggtggataccaacatgcccctgtctgagtcaggc
caggcccccctaacgctctacaagatgagccctggttctggatcacagcaacagcagtac
ccaacctcaccccatatgaacaacaaaaacaacatgccagtgcagtggaatgaggtcagc
tcagggactgtggacaccacaggcacctcaagactcaccaagcagaacctcctcagaaac
aacaacctggcagtggttcagcagagacagaactgtgggcctttccagggaagtatgggt
agtaacagtaaccagcaggtgatgcctatgagccagaacatggagctacaaggctacact
cagagaagcaacgcccaagggatcaactctgtccaacagcaacagaggcagccatgcagc
atgaattatactgatcagatgagtccccagcagggatacggccaagacattgtccccatc
cctaactctggatctgggaatggcagcctacgacccaactataacggcatggcactgccc
aatggcagagtaatggcaacacataatccagatattcaaaactacagatcaaggactcag
gttgaaagctatccccctcacatgaatcaggttgagcagctgaactacagtagtatgcct
cagcagcaagccgtccatactgggaccagagatgggatgcagcccaggcttcccatggag
accaagtctatgcccagacaacatgtaagatccagcagtacgatgcagaaccgtttcctt
cagtctgacttcaatcacaacacctctgaggccagtccaaagaagccaggccgcaccgca
gcacataacgtcggacaaaagggaaactccaactctaacgctccagtgttatacactggc
cagatacacatgttcgagtccaacaacaacctgagtttcgactcccccatgtccccctgc
acaccccaggcactggtaggcactgctattaccatggcatccccaggggtcaaccaggtc
accagcaccgtggactcctctggtgtggagcatgcccagattgactttgatgccatgttg
gatgatggtgaccactccagcctgatgtcggggaccctcagccccgggatcctcacaagt
ctgtcccagaactcctccaggctcaccaccccccgtagctctgtgaccctggcctctgtg
ccagcagggatcggtaacatggccattggcgatatgaactccatgttgaccgccctggct
gaggagagtaagttcctcaacatgatgagctaa
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integrated database retrieval system
