Oncorhynchus tshawytscha (Chinook salmon): 112225898
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Entry
112225898 CDS
T05605
Name
(RefSeq) sodium channel protein type 4 subunit alpha B
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
otw04040
]
112225898
Ion channels [BR:
otw04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
112225898
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Gene cluster
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
Zip
GPHH
Motif
Other DBs
NCBI-GeneID:
112225898
NCBI-ProteinID:
XP_042163219
LinkDB
All DBs
Position
LG27:3939528..4002627
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AA seq
1903 aa
AA seq
DB search
MVALLPPTGTEVFRRFTLESLAEIERRMAEEAEEQERKKALNIEVAEEDLPKPAVDLEAG
KALPFIYGDPPPELFNTPLEELDPFYKSHKTFIVITKGNTIFRFNAEPACYILTPFSILR
RGSIKILIHSLFSMFIMLTIMSNCVFMTMSDPPAWSKTVEYVFTGIYTFEATIKVLSRGF
CVGDFTFLRDPWNWLDFMVISMAYLTEFVDLGNVSALRTFRVLRALKTITVIPGLKTIVG
ALIQSVKKLADVMILTVFCLAVFALVGLQLFMGNLKQKCVYWPPVEWRLNSTNMDNITMA
FNDTSGFNDVMDYNGTNSSNSTWDFKAYIDDKVNHYFLPGMLDPLLCGNASDAGNCPEGY
TCMKAGGNPNYGYTSYDSFGWAYLALFRLMTQDFWENLFQLTLRSAGKTYMIFFVVVIFL
GSFYLINLILAVVAMAYAEQNEATMAEAKEKEEEYAMIMVQLKERREAEVKERHDRHHEH
HEHAEIAGSQTSLSSRTSKKEKGEKADEEVADDEACTSSSLYSEAIKDSNGGLMISANAN
KVLTDQESAVVLKRASGPKGSKDQLEVVGLQKKTPSSSSVYSQDDMDDLEEELRPCPPCW
YKCSDIFLKWNCCVPWVTFKKWMYFIVMDPFVDLGITICIVLNTMFMAMEHYPMTPEFEE
VLSVGNLVFTGIFTAEMVLKLIAMDPYYYFQVGWNIFDSIIVTMSLVELGLANVEGLSVL
RSFRLMRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAIIVFIFAVVGMQLFGKSYKE
CVCKISLDCELPRWHMHDFFHAFLIIFRVLCGEWIETMWECMEVAGQGMCLVVFMMVMVI
GNLVVLNLFLALLLSSFSGDNLAAPEEDGEMNNLQIATGRITRGIDWAKAYIIQQFCIII
GKQPKEDGDGADGNGGSNGDVDGLPKGSLALKNIISSDNPKTDLELAMLDVWIDDVNPSG
FLTNDNLTLDVPIAKMESDDDEDDISEEEEGEGANGDAKEDTELKKPIAPDNASSICSTV
DNPPEVEEEEEEEADTTNPENCWTEKCIGRCPCLDFDITSGKGKTWWNFRKTCFLIVEHN
YFETFIIFMILMSSGALAFEDIYIEQRRTIKIILEYADQVFTYVFIIEMLLKWVAYGFQA
YFTNAWCWLDFLIVDVSLISLTANILGYSELGPIKSLRTLRALRPLRALSRFEGMRVVVN
ALVGAIPSIFNVLLVCLIFWLIFSIMGVNLFAGKYYYCFNTTSEERFSADVVNNKTECYQ
LMEGNDDVRWMNAKVNYDNVAMGYLSLLQIATFKGWMDIMYGAVDSRFVEDQPIYEDNVY
MYIYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKLGSKK
PQKPIPRPQNKFAGLIFDLITQQFFDIFIMVLICLNMVTMMVETDGQSKEKEDILFLINL
VFIIVFTTECILKLIGLRQYFFSVGWNIFDFVVVILSIVGLLLADLIEKYFVSPTLFRVI
RLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLIMFIFSIFGMSNFAYVKKE
AGIDDMFNFETFGNSIICLFMITTSAGWDGLLSPILNSRAPDCDPDVENPGTDVRGNCGS
PGLGICFFCSYIIMCFLVVVNMYIAIILENFNVATEESGDPLCEEDFEMFYETWEKFDPD
ASQFIAYDILSEFCDTLKDPLRIPKPNAIKLITMDLPIVPGDKIHCLDILLALTTEVLGE
SAEMDAMKESMEEKFMANNPSKVSYEPITTTLRRKQEEVAAVVIQRAYRKHLLRRSLKLA
SYKYREKKALTKEDEAPPETEGMIAIRMNKLYGSQQSLGVDETVVDMDSHEKRESKELTE
TQPPVETTEEPLPVELQNEIILHSAPFVIPASIRISQLKESDV
NT seq
5712 nt
NT seq
+upstream
nt +downstream
nt
atggtcgccctgctccctcccacaggcaccgaagtgtttcgccgcttcacccttgagtcg
ctggcggagatcgagaggcggatggccgaggaagcagaggagcaggagagaaaaaaggcc
ctgaacattgaggtggcagaggaggacctgccaaagccagccgtcgacctggaggccggc
aaggccctgccattcatctacggagacccgccacctgagctgttcaacacgcctctggag
gaactggatcctttctacaaatcacacaaaacctttatcgtcatcaccaaagggaataca
atcttcaggttcaatgctgagcctgcctgctatattctaacacccttcagtattctcagg
agaggatccatcaaaattctcatacattcattatttagcatgttcatcatgttaacaatc
atgtccaactgtgtgttcatgacgatgagtgaccctccggcatggagtaaaactgttgaa
tatgttttcactggtatctatacctttgaggcaacaattaaagtgttgtccagaggcttc
tgtgttggagatttcacattccttcgagatccatggaactggctggattttatggtgatc
agcatggcgtacctcacagagttcgttgacctgggcaacgtgtctgccctcaggacgttc
cgtgtgctccgagcccttaaaacaatcactgtaattcccggtctgaaaaccattgtgggc
gctttgatccagtcagtgaagaagctggctgatgtgatgatcctaacagtgttctgcctg
gctgtgttcgctctggtcggccttcaactgttcatgggaaacctgaagcagaagtgtgtt
tactggccccctgtggaatggcgtttaaactctaccaacatggacaacatcactatggcc
ttcaacgacaccagtggttttaatgacgttatggactacaatggcacaaacagcagcaac
agtacgtgggacttcaaggcatacatcgacgataaagtgaaccattacttccttcctgga
atgttagaccctcttctttgtggaaacgcttctgatgctggaaattgccctgaaggatac
acgtgtatgaaggccggagggaatcccaactatggctacacaagctacgacagttttgga
tgggcctatcttgccctatttcggctcatgacacaggacttctgggaaaatctattccag
ctgactcttcgctcagcagggaaaacctatatgattttctttgtggtggtgatcttcctg
ggctcgttctacctgatcaacctgatcctggctgtggtggccatggcgtatgccgagcag
aacgaggccaccatggccgaggccaaggagaaggaggaggagtatgccatgatcatggtg
cagctgaaggaaaggagagaagcagaggtcaaagagagacatgacaggcatcatgaacac
catgaacacgctgaaattgctggcagtcagacgtcactgtccagtagaacatctaagaaa
gagaaaggtgaaaaggcagatgaagaggttgctgatgatgaggcgtgtacgtcctccagc
ctttatagcgaggctataaaggactccaatggaggcctcatgatcagtgccaacgccaac
aaggtcctgacagaccaggagtctgctgttgtgttgaagagggccagtggacccaagggg
agtaaggaccagctggaagtagtaggcctgcagaagaagacacccagttcatccagtgtc
tacagccaagatgacatggacgatttagaggaggaactgagaccttgtccgccttgctgg
tacaagtgttcagacatcttcctgaaatggaactgctgtgtgccctgggtgactttcaag
aagtggatgtacttcatagtgatggacccattcgtggacttgggtatcaccatctgcatt
gtactcaacaccatgttcatggccatggagcactaccccatgacgccagagtttgaagaa
gtgctgagtgtggggaacttggtcttcacaggaatcttcacagcagagatggtgctgaag
ctcatcgccatggatccgtactactacttccaggtcgggtggaacatcttcgacagcatc
attgtgacaatgagcctggtggagctggggctggccaacgtcgaaggtctatccgtgcta
cgttccttccgtctgatgcgtgttttcaagctggccaaatcctggcccacactcaacatg
ctaatcaagatcatcggtaattcagtgggcgcactgggtaacctcaccctggttctggcc
atcatcgtcttcatcttcgccgtggtgggcatgcagctcttcggcaagagctacaaagag
tgtgtctgcaagatctccttggactgcgagctgccccgctggcacatgcatgacttcttt
catgcttttctcatcatcttccgggtgctgtgcggagagtggatcgagaccatgtgggag
tgcatggaggtggccggacagggcatgtgtctcgttgtcttcatgatggtcatggtcatc
ggtaacctagtggtgttgaacctcttcttggccttgctgctgagctcattcagcggtgac
aacctggcggctccagaggaggacggggagatgaacaacctgcagatcgccaccggcagg
atcaccagaggcatcgactgggccaaggcctacatcatccagcagttctgcattatcata
gggaagcagcctaaggaggatggagacggggctgacggtaatgggggtagtaatggggat
gtggacggcctcccaaagggcagcttggctttgaaaaatataatctccagtgacaaccca
aagactgatttggagctcgcaatgcttgacgtttggatagacgatgtcaacccaagtgga
tttcttacaaatgacaatttgaccctggatgtacctattgccaaaatggagtcggatgat
gatgaggatgacatctctgaagaggaagaaggagaaggtgcaaatggagatgctaaagag
gatactgagttaaagaaacctattgcaccggacaatgcctcttcaatatgcagcacagtg
gacaatccccctgaagtggaagaagaggaggaagaagaggcagacaccaccaaccctgag
aactgctggaccgagaaatgcattggacgatgcccgtgccttgattttgacatcacctcg
ggcaaaggaaagacttggtggaacttcaggaagacatgcttcctcattgtggagcacaac
tactttgagaccttcatcatcttcatgatcctgatgagcagcggtgctttggcttttgaa
gacatatacattgagcagcgcaggaccataaaaatcatcctggaatatgctgatcaagtc
ttcacctacgtgttcattattgagatgctcctgaagtgggtggcttacggattccaggcc
tacttcacaaacgcatggtgctggctggacttcctcattgtggatgtgtctttgattagc
ttaacggctaacatcctgggctattctgaacttggaccaatcaaatctcttcgaacttta
agggccttgcggcccctccgcgccctgtccagatttgagggaatgagggtggtggtgaat
gctctggtaggggctattccttccatcttcaacgtgcttctagtgtgcctcatcttctgg
ctcatcttcagcatcatgggtgtaaacctgtttgctgggaagtactactactgcttcaac
accacgtctgaggagaggttctctgctgacgttgtgaataacaagaccgaatgctatcaa
ctaatggagggtaatgatgacgtgcgctggatgaatgcaaaggtcaactatgacaacgtg
gccatgggctacctctccctcctgcaaatagcaacgtttaaaggatggatggatataatg
tatggcgctgtggattcacgttttgtggaagaccagcccatatatgaggataatgtttac
atgtacatctactttgtcatattcatcatctttgggtccttcttcacactgaatctcttc
attggtgtcattatcgacaacttcaaccaacaaaaaaagaagtttggagggaaagacatt
ttcatgacagaggaacagaagaaatactacaatgccatgaaaaagcttggttccaagaag
ccacagaaacccattcctagaccccagaacaaatttgcaggccttattttcgacctgatc
acccaacaattcttcgacatcttcatcatggtgctgatctgcctcaacatggtaacgatg
atggtggagacggacggccagagcaaggagaaggaggatatactcttcctcatcaacctg
gtgtttatcatcgtcttcaccacagagtgtatccttaagttgattggactgcgacaatat
tttttttctgtcggatggaatatttttgattttgtcgtcgtcattctctccattgttggt
ttactgctggcggacctcatagagaagtattttgtctcacctacccttttccgtgtcata
agactggccaggattggtcgagttctgagactcatccgaggagctaaaggcatccggaca
ctgttgtttgccctgatgatgtcacttcctgctctcttcaacattgggctcctgctcttc
cttatcatgtttatcttctccattttcggaatgtccaactttgcgtatgtcaagaaggag
gccggaatagacgatatgttcaattttgaaacttttggcaacagtataatttgtctgttc
atgatcacaacctcagccggttgggatggtctcctctcacccattctaaatagtagagct
ccggactgtgacccggatgtggaaaatcccggcacagatgtaagaggcaactgcggcagc
cctggtttgggaatttgttttttctgcagctacatcatcatgtgtttccttgttgtggtc
aacatgtacattgccattatcctcgagaacttcaatgtggccacagaggagagtggtgac
cctctgtgtgaggaagacttcgagatgttctacgagacctgggagaagttcgaccctgac
gcgtcacaattcatcgcctacgacattttgtcggagttctgtgacacgcttaaagacccg
ctcaggatccccaaacccaacgcaatcaagctgatcaccatggaccttcccattgtccct
ggggataagatccactgtctggacatcctgctggcgctgaccacagaggtgctgggagag
tcagcggagatggatgccatgaaagaaagcatggaggagaagttcatggccaacaacccc
tctaaagtgtcatacgagccaatcaccaccaccctgaggcgaaagcaggaggaggtagca
gctgttgttattcagagagcctatcgtaagcatctgctgagacgttcattgaaactcgct
tcctacaagtaccgcgagaagaaagcgttaaccaaagaggacgaagcgccgccagagacg
gagggaatgattgccatcaggatgaacaaactgtatggaagccaacaatcactcggagtg
gatgaaacagttgtagatatggattctcatgaaaaacgggagagcaaagaactgacagag
acacaacctcctgtggagactactgaagagccactgcctgtggagcttcagaacgagatc
atcttgcactctgccccctttgtcatcccggcctcaatccgtatctcacagctgaaagag
tccgatgtttga
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