Oncorhynchus tshawytscha (Chinook salmon): 112226963
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Entry
112226963 CDS
T05605
Name
(RefSeq) ATP-dependent RNA helicase A
KO
K13184
ATP-dependent RNA/DNA helicase DHX9 [EC:
5.6.2.6
5.6.2.4
]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
otw03041
]
112226963
03012 Translation factors [BR:
otw03012
]
112226963
Enzymes [BR:
otw01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
112226963
5.6.2.6 RNA 3'-5' helicase
112226963
Spliceosome [BR:
otw03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
112226963
Translation factors [BR:
otw03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
112226963
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
dsrm
OB_NTP_bind
Helicase_C
DEAD
HA2_N
HA2_C
Dicer_dimer
ResIII
AAA_19
nSTAND3
AAA_14
ATPase
Motif
Other DBs
NCBI-GeneID:
112226963
NCBI-ProteinID:
XP_024247448
LinkDB
All DBs
Position
LG28:24555371..24574650
Genome browser
AA seq
1326 aa
AA seq
DB search
MRPKSRPDRLVPQCYHVCRLNGLYLLSGSFEKVSGGGRVEKYKSAMADIKNFLYAWCGKK
KLTPSYDIRAAGNKNRQKFLCEVRIEGFNYTGMGNSTNKKDAQANAARDFVNYLVRVGEM
NAAEVPALGASGPDFSVPDCGGGGEGGNVGFGSLPPSGPIPPHLVVKAEQVNAPSAPVPG
VTGLGYSGGSGNFSGGGTNSNAPWDRGANLKDYYSKRDEQEAQATLESEEVDLNAGLHGN
WTLENAKARLNQFFQKEKNQTDYKYSQVGPDHNRSFIAEMQLFVRQLGRKIIAREHGSNK
KLAAQSSALSIVRQLYHLGVIEPYSGVTKKKEGEILEAFEVNVVDELQHQLQSMAQELGV
AIPPPPPDPSTPVSLVQGKMAVFEPSQKQSMAGVVPWSPPQVNWNPWTSSNIDDGPLAFC
TPEQISTDLHHELTYQLEQDQSLQKVIGERDGLPVKKFEEEIMAAVQGSSVVIIRGATGC
GKTTQVPQYILDQFIKSGRASECNIIVTQPRRISAVSVAERVSYERGEDVGKSCGYSVRF
ESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLMVVLRDVVQTYP
EVRIILMSATIDTTMFREYFFNCPVIEVFGRTFPVQEYFLEDCIQMTHFIPPPSDRKRKD
KDEEGGDEEANCNVICGPEYTPETKRSMAQMNEKETPFELVEALLKYIETLQVAGAVLVF
LPGWNLIYSMQKHLEMNPHFGSQRYLILPLHSQIPREEQRRVFEPVPENITKVILSTNIA
ETSITINDVVYVIDSCKQKVKLFTSHNNMTNYATVWGSKTNLEQRKGRAGRVRAGFCFHL
CSRARFDKLETHMTPEIFRTPLHEVALSIKLLRLGAIGHFLSKAIEPPPLDAVIEAEHTL
RELDALDTNDELTPLGRILAKLPIEPRLGKMMIMGCIFNVGDAVCTISAASCFPEPFIND
GKRLGYVHRNFAGTRFSDHVALLSVFQAWDDVRMGGEDAESRFCEHKRLNMSTLRMTWEA
KVQLKEILINSGFPEECLMTQMFNNVGPDNNLDVVVSLLTYGSYPNVCYHKEKRKILTTE
GRNALIHKCSVNCPFSSQDMTYPSPFFVFSEKIRTRAISAKGMTLVSPLQLILFASKKIT
SNGEIIELDDWIKLKIPHNVAGCIAALRAGMEALVVEVTKDPEYIKQLDPTNERMLNIIR
QISKPSAAGLNLMVNNKRFGDGPRPPKMGRFDGGGGGGYQGGGGGGYRGGGYRGGGGYQG
SGGYRGGGGGYRGGGGGYRGSGGGYRGGGGYGGGTGVGVVMEGEQGWGWLWRGNRGGGGY
GGGQGY
NT seq
3981 nt
NT seq
+upstream
nt +downstream
nt
atgcgcccaaagtccaggcctgaccgtctcgtcccccagtgctatcatgtctgccgtctg
aatggtttgtatttgctatccggctcgtttgaaaaagtatctggtggaggtcgagtggag
aaatacaaatccgccatggcggacatcaagaacttcctgtatgcttggtgtgggaagaag
aaactaacacccagctatgacattcgagccgctggaaacaaaaaccgacagaagtttctg
tgtgaggttcgtattgagggattcaactacactggaatgggaaactccaccaataagaag
gatgcccaggcaaatgctgctagagactttgtcaattatcttgtccgagttggagaaatg
aatgcagcagaagtcccagcccttggggcaagtggacctgacttcagtgtacctgactgt
ggaggagggggtgaaggagggaatgttggctttggaagtcttcctccaagtggacctatc
cctcctcacctggttgtgaaagctgagcaagtgaatgcaccttctgcgccagtcccaggt
gtcactggtttgggatattcgggcggtagcggcaatttttccggaggtggcacaaacagc
aatgctccgtgggatcgtggggccaatctaaaggactactactcaaagagagatgagcag
gaggcacaggcgactctggagtctgaggaggtagatctgaacgcaggactccatggcaac
tggactttagagaacgccaaggcccgtctgaaccaatttttccagaaggagaagaatcaa
acagattacaaatacagccaagttgggcctgaccacaacaggagctttattgctgagatg
cagttatttgtaagacagcttggcagaaagataattgcccgcgagcatggctctaacaag
aagcttgcagcacagtcctctgcgctgtctatcgtccgtcaactttaccatctgggtgtc
attgagccttattctggcgtcactaagaagaaagagggggaaattttggaagcttttgag
gtgaatgtggtggatgaactgcaacatcagctgcagagtatggcccaagaactgggtgtt
gcaattccacctccaccacctgatccaagtactccagtgtctttggtccaagggaagatg
gctgtgtttgaaccctcccagaaacagagcatggctggggtggtgccctggtcccctccg
caagtcaactggaacccctggaccagcagcaatattgacgatggaccactagcattttgc
accccagagcaaatcagcactgacctccatcatgagctgacttatcaattggaacaagat
caaagcctacagaaggtcattggggagcgagacgggcttccagtgaagaaatttgaggag
gagataatggctgccgttcagggcagctcagtggtgatcattcgaggggcgaccggctgt
ggcaaaaccacccaggttcctcagtacatcctggatcagttcatcaagagtgggagggcg
tccgagtgtaacattattgtaacccagccccggcgtatcagtgcagtgtctgtggctgag
cgtgtttcctacgagagaggagaggatgtcggtaagagctgtgggtacagcgtccgcttt
gaatccatcctcccacgaccccatgccagcatcatgttctgcactgttggtgtgttactg
cggaagctggaagcaggcattcgcgggatcagccatgtgattgtggatgaaatccacgag
agagacatcaatactgacttcctcatggtggtgctgagggacgtggtccagacctaccca
gaggtccgcatcatcctcatgtctgccaccatcgacaccaccatgtttagagagtacttc
ttcaactgccctgtcatcgaggtgttcggccgcacattcccagtacaagagtactttttg
gaagattgtattcagatgacacatttcattccacctccgagtgatagaaagaggaaggac
aaggatgaggaaggaggagatgaagaggccaactgtaatgtgatatgtgggccagagtac
accccagagactaagcgctctatggcccagatgaatgagaaggagactccctttgagctg
gtggaggccctgctgaagtacatcgagaccctccaggtggccggggccgtgctagtcttc
ctgcccggctggaacctcatctactccatgcagaaacacctggagatgaacccacacttt
gggagtcaacggtacctgattctgcctctccactctcagatccccagagaggaacagagg
agggtatttgagcctgtgcctgaaaacatcaccaaggtgatcttgtcaacaaacattgca
gagaccagtattactatcaatgatgtagtatatgtcatcgactcttgcaagcagaaagtg
aaactgttcacgtctcacaacaacatgaccaactacgccacagtctggggctccaagacc
aacctggagcaaaggaagggtcgtgccggccgcgtccgggctggcttctgctttcatctg
tgtagcagagcacgcttcgacaaactggagacccatatgacccctgagatattccgtact
cctctccacgaggtagccctgagcatcaagctgctgagactaggagccattggccatttc
ctttccaaggccatcgagccccctcccctggacgcggttatagaggcagaacacacactg
agagaactggatgctttggacacaaatgacgagttgacgccgcttggtcggatccttgca
aagcttccaatcgagccgcgtctggggaagatgatgattatgggctgcatattcaatgtt
ggagatgcggtgtgcacgatctcagcagcctcctgcttcccagagcccttcatcaatgat
ggcaagcgcttgggctatgtgcaccgcaactttgctggcacccgcttctcagaccacgtg
gcccttctgtcagtcttccaggcttgggacgatgtgagaatgggaggtgaggatgcagag
tccagattctgtgaacacaagaggctcaacatgtccacactgaggatgacctgggaggca
aaagtgcagctgaaggagatcctcatcaactctggcttccctgaggagtgcttgatgaca
cagatgttcaataacgttggacccgacaacaaccttgacgtggtcgtctctctcctgaca
tacggctcctatcccaacgtgtgctaccacaaggagaagaggaagattctcaccactgag
gggcgcaatgccctcatccacaaatgctccgtcaactgccccttcagcagccaggacatg
acctacccatcaccgttcttcgtctttagcgaaaagatccggactcgagccatctcagcc
aaaggaatgacactagtcagcccactccagctgatcttgtttgcctccaagaaaatcaca
tcaaacggggaaatcattgaactggatgattggatcaaactgaagataccgcataatgtg
gctggctgcatagctgctttgagggctggaatggaggcacttgttgtagaagtcaccaaa
gaccctgagtacatcaaacagctggatcccacaaacgagcgcatgctcaacatcatccgt
caaatctccaagccctctgcagctgggcttaacctcatggtcaacaataaacgttttgga
gatggtccacgtcctcccaagatgggcaggtttgacggaggaggcggtggaggataccag
ggaggaggcggtggaggatacaggggaggaggttacagaggcggtggaggataccagggc
agcggcggatacaggggcggtggtggaggttacagaggcggtggtggaggttacagaggc
agtggtggaggttacaggggtgggggtggttatggagggggaacaggggtgggggtggtt
atggagggggaacaggggtgggggtggttatggagggggaacaggggtgggggtggttat
ggagggggccagggatattag
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