Oncorhynchus tshawytscha (Chinook salmon): 112227966
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Entry
112227966 CDS
T05605
Symbol
smchd1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112227966 (smchd1)
03400 DNA repair and recombination proteins [BR:
otw03400
]
112227966 (smchd1)
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
112227966 (smchd1)
DNA repair and recombination proteins [BR:
otw03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
112227966 (smchd1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
112227966
NCBI-ProteinID:
XP_024248780
LinkDB
All DBs
Position
LG29:10564633..10602958
Genome browser
AA seq
2014 aa
AA seq
DB search
MAESEGVTTSAVANSNRTHISQSKNGVNGSDKPHNSVVIFDCRPERHDAMERVLDINGLD
FNDFLQVVSKEFAIPSNETFVLTTTDRKGIDFDRYENLQQGNTLHLLQTEDQILPVATKE
HIVFLPHYDTLVQSGMYEYYASEGQNSLPYAFAELIDNALSATSHNTGVRTIDIRLLFDE
SLGKHAVVIMDNGCGMTSKQLNNWAVYRLSKFSRESGTFSSDHAGYVRPDPVARSLNSDI
SYFGVGGKQAVFYIGQSTRMITKPAGSPDVHELIISKEEFERKERNKEDIYSGFIRNRKM
ADSSHVRDDEERFLHGLIAEEVGKDSFTAVVVTGVQPEHVTFLKQDFHLWTRELAHLYHY
YIHGLNGNDMKASYRNSDCVSNIDIQISLLEKFPKIPRMVNLREIDNDMQTLYINTSADT
FEFKACTDVDGIVEGVLRYHPFLYDRETYPEDPYAIPATEEDDDSIVLNQARGKRPIFEC
FWNGRLIPYTTVSEFDWCAWPKKTGTVPAECYSRFSGVLFTNDRFQVSTNKLTFMDLELQ
LKNKETLFTRIVNGQEQRVKIHKEFHQWLKTCHEKWDKQVKFRGFKRTITRTDVTTKKMQ
SPWATFSSIEWDGRAYKAGQYVKSQKTQPIFFGSVIQFLLYGDHEGDVYATGGQVQVAME
PKALYDDIKTIPISKIDRVITNAAIKKSIDDELAKLPDKLKVTWPEGNPWTQNDVRPAGT
PLGPLHVEILNKKGESISRIPSAMQNTTRKALLIELKVVWHSPNGDVETNSHIAAHSAKW
AFWFRTMENLNKLGKYTLHLNTILNVNESNATVWAGNRLPNHTLDFSITEGSAERFMVGT
VNTLLHVGVPFHIPLELLDEYGHPARPPPNLKPLLECSALEVSYEGVTARGTILTIRGVR
ARGAVQHYQSKTHDLKVVLPGLKQDSQTLKISLLPGNPDSLKVKQEDPITVENGTSVSFD
VEVHDVAGNVTAHPKLIISCQLQGIPGSSSMVAVDCSNTGAGTLVLKPITFKNIAGDQTV
KATFDIPSQKSVAPVQRDLRVVPSTRVSRLEVYSQEDEDSLVDSMMLRDKEKIDWTAGDL
LENLHYRLYDERGRVVPLSEEMARRIKVNWAADVSVEELAQGKLPNVPVPTLVKEEHFYQ
VSYMEELVSVDTSFTIVPRPDEPKHMKATLSESTVRMGEVLSGKIFLQLTDQYGNKTQML
TATCVDSLAVDAEGLDKASLVFTWQESTHSMLVTGVRFNPGFPGIRELNFTWRDFAEHVT
IKLTAGVPAQLKLVDGPQEPLQVLNEQGIQTPFLLQLFDEWGNPSPDQRVVVTLKTSTPA
LKVKSPVNSQPIDKDGKASFVVDHVSGPKGEYALEFRGSFNKKPIHGPAVKLTIIPDPNK
PVKLVVEYNTNSVFPAGGTLTVFSVSVMSEEGSTIKNLNPANMSMLLWKGEPSGTSRPPS
GAAQLKCSKPMEDEKANSFHFRDKVIPDHVGKYTIQFVLCVDKTKGLWSHQYVINVVPND
PVKLAPDLQPPTPVVVNNNVLDSRTLVEDMSLKLMDMYNNSAGLELSGKVVVTIKSSKGS
SDKNLPLFEGKVKSLQFSLANGEAQITNLFIMENSPGQDGNEYVLLFRPSVPGYGPKNPL
AAFELPFRFYNDVENRKQMSELTKKKDQLKQTVDIYRSLFDTNRQLITELSNQVRNATNK
ESHLKSELGKNGMAVAQLSSIPAIDKVIGQKTADAEKMKLQTRRVCAMPDPFRGNLDVLG
KIGHLALVEDDDVATVISWHLLGDIDCVVTMTTVAARKIYDDTQGKQQVMPLDTVFWRKN
SSRPLPHIRNGRDSFRPIGNPVFARDLLIFPENAENCHIVFGNLLGDTILTDDLDSANHY
RKGVVQSKVPCPTLLTRQGDRIRSNGKFGGLQNKAPPIERLRGQVFGAPLPKDYHTFMGQ
IDLLQQYRLAMEKSRQVQEDFDGHMQYLKSPEMVQKEEEMDEQEKQLKDIETKLASTPVR
TPSAIGVKRSLDKAGESSGMVTKRTRRKLLKQDY
NT seq
6045 nt
NT seq
+upstream
nt +downstream
nt
atggcagagtcggaaggtgtgacaacgtctgctgttgccaatagcaatagaacacacatt
tcacagagtaaaaatggagttaacgggtcagataaaccacataatagtgtggtaatattc
gactgtcgtccggaaagacacgacgcaatggagagagttctggacataaatggcttggac
ttcaacgacttccttcaagttgtatcgaaggaatttgccattccttccaacgaaacgttt
gtcttgacaacaacggacagaaaaggaatagattttgacagatatgagaatcttcaacaa
ggaaacactctccacctgttgcagaccgaggaccagatcctgcccgtggcaactaaggaa
cacattgtgtttctccctcactatgacacactggtccagagtggcatgtatgagtactac
gctagtgagggccagaattctttaccgtatgcctttgcagaactaatcgacaatgcactg
tcagctacatcgcacaacacaggagtgaggaccatagacatccgattgctgtttgatgag
tccttggggaaacatgcagtggttatcatggacaatggctgtggaatgacctccaaacag
cttaataactgggctgtgtacaggctctccaaattcagcagggaaagcggcacgttttca
agtgatcatgcagggtatgttcgccctgatccagtcgctcgcagtctcaacagtgatata
tcatattttggagtaggagggaaacaagcagtgttctacattggacagtcaaccaggatg
atcaccaaaccagcgggctccccagatgtccatgaactcatcatttcaaaagaagaattt
gagaggaaggagcggaacaaggaagatatttacagtggtttcatcagaaaccggaagatg
gctgactcgtcccacgtgagagacgacgaggagcgcttcctccatgggctgatcgctgag
gaggtgggaaaggacagcttcacggccgtggtggttacgggagtccagcctgaacatgtc
accttcctcaagcaggacttccacctgtggaccagagaactggcccacttgtatcactac
tacattcacggcctaaatgggaatgacatgaaagcctcctaccgaaactctgattgcgtt
tccaacattgacattcagatctctctgctggagaagttccccaagatccctcgcatggtg
aacctcagagagatcgacaacgacatgcagacgctctacatcaacacgtcggctgacaca
ttcgagttcaaggcctgcacagacgttgatggaatagtggagggggtcctgaggtaccac
cccttcctctatgacagggagacctaccccgaagacccctatgccataccagctacggaa
gaggatgatgacagtatcgtcctgaaccaggccagggggaagaggcccatatttgagtgt
ttttggaatggacgtctcatcccatacaccactgtatccgagtttgattggtgcgcatgg
ccaaagaagaccgggacagtgcctgcagagtgttacagcaggttctcaggggtgctgttc
accaatgaccggttccaggtcagcaccaataagctcactttcatggacctggagctgcag
ctaaagaataaggagaccttattcacccgcattgtcaatggccaggaacaaagggttaaa
atccataaggagtttcaccagtggctgaagacctgccacgagaagtgggacaagcaagta
aagttcagaggcttcaagagaaccatcacacgaacagacgtgaccacaaagaagatgcaa
tctccttgggctaccttctcctccatcgagtgggacggtagagcgtacaaagctggtcaa
tacgtgaagtctcagaaaacacagcccatcttctttggctccgttattcagttcctactg
tatggcgatcacgagggagatgtctacgccacaggagggcaggtgcaggtggccatggaa
ccaaaggcgctgtacgatgacatcaagaccatacccatctccaaaatcgacagggtgatt
accaatgcagccatcaagaagagcattgatgatgaactagccaaactcccagacaagcta
aaagtgacctggccagagggcaatccctggacccagaacgatgtccggccagcaggcact
ccactaggacctctccatgtcgaaattctcaacaagaaaggagagtcaatatccaggata
ccatcagccatgcaaaacacaacacggaaagcacttttgatcgaactaaaagttgtttgg
cattcacctaatggtgatgtggagaccaactctcacattgcagcacattcggccaagtgg
gcattctggttcagaaccatggagaacctgaacaagctggggaagtacactctgcacctg
aacacaatactcaatgtcaatgagagcaacgctaccgtctgggctgggaatcggcttccc
aaccacacactggacttctccattactgagggcagtgcagagaggtttatggtgggcaca
gtgaacaccctgctccatgtgggggtgcctttccacatcccactggagctgctggatgaa
tacggtcaccctgctcgcccccctcccaacctcaagcccctcctggaatgcagtgccctg
gaagtgagttacgagggggtgaccgctagggggaccattttgaccatccggggcgtcaga
gccaggggggcggtgcagcactaccagagcaagacgcacgacttgaaagtggtattgcct
ggcctcaaacaggactcgcagactctgaagatcagccttctccctggtaacccagattca
ctgaaagtgaaacaagaggatccaatcactgtggagaatggaacttcggttagctttgat
gtggaggtccatgacgtagcaggaaacgtcacagctcaccccaaactgatcatcagctgc
cagttgcaggggatccctggttcgtcctccatggtggctgtagactgcagtaacacagga
gccgggaccctggtgctaaaaccaatcaccttcaaaaacattgcaggagaccagacggtt
aaagctacatttgatattcctagtcagaagagtgtagctccagtccagagggatctgagg
gttgtccccagcacccgtgtgtcacgtctcgaggtgtacagtcaggaggacgaggacagc
ctggtggactccatgatgcttagggacaaggaaaagatagactggactgcaggggacctc
ctggagaacctccattatagactgtatgacgagagaggcagggtggtccctctgtctgag
gagatggcccggaggatcaaggtgaactgggcggctgacgtgagtgtggaggagctggcc
caggggaagctgcccaacgtgccggtcccgacgctggtgaaggaggagcacttctaccag
gtctcctacatggaggagctggtgtctgtcgacacctccttcactatagtgccccgcccc
gacgagccgaaacacatgaaggccaccctgagcgagtcgaccgtgaggatgggagaggtc
ctatcaggaaagatcttcttacagcttacagaccagtatggtaataaaactcagatgctg
accgcgacctgtgtggactctctcgccgtggatgccgagggtcttgacaaagcatccctg
gtctttacctggcaggagagcacccactccatgttagtgacaggggtgcggttcaaccct
gggttcccaggcatcagagagctgaacttcacctggagggactttgcggagcatgtgaca
attaaattgacggctggggtccctgcacagctcaaactagtggacggaccacaagagccc
ctgcaggtactgaatgagcagggcatccagacgcccttcctcctccagctgtttgacgag
tgggggaacccctctcctgaccagagggttgtggtgacactgaagacttccactccagct
ctaaaggtgaagtcacccgttaattcacaaccgatagacaaagatggaaaagccagtttc
gtagtggaccatgtgagcggtccaaagggggagtatgcgctggagttcagagggtccttc
aacaagaagcccatccacggtccagccgtaaagcttaccataatccctgatcctaacaaa
cctgtcaaactggtggtggagtacaacacaaactcagtgtttcctgctggaggcaccctc
acagtgttttcagtgtctgtgatgtcggaggagggcagcaccatcaagaacctcaaccct
gccaacatgtccatgctgttgtggaagggagagccgtcagggacgtcaaggcccccctca
ggggctgcccaactgaaatgcagcaaacccatggaagacgaaaaggcgaacagttttcac
ttcagagacaaagtcatcccagaccatgtcgggaagtacaccatccagtttgtgctgtgt
gttgacaagactaaagggctgtggagtcaccagtatgtcataaatgttgtacccaacgac
cctgtcaaattggccccagacctgcagccaccaaccccagtggtggttaacaacaacgtc
cttgacagtcggactctggtggaggacatgtctctgaaattaatggatatgtataataac
tcagcggggctggagctgagtgggaaagtggtggtgaccattaagagctccaaaggctcc
agtgacaaaaatctgcctctctttgagggcaaagtcaagagcctgcagtttagcctggct
aatggagaggcccaaatcactaatctgttcatcatggagaacagtcctggtcaggatggg
aatgagtacgtcttgctcttcagaccttcggtcccagggtatggccccaaaaatcccctg
gcagcgtttgagcttcccttccgcttctacaacgatgtggaaaacaggaagcagatgtct
gaactgaccaagaagaaggaccagctcaaacagaccgttgatatctacaggagtctgttt
gacaccaacaggcaactcatcactgagctcagtaatcaggtgcgcaacgccaccaacaag
gagagtcacttgaaatccgagctcgggaagaatggcatggctgtagcacaactgtcgtcc
atcccagcgatcgacaaagtcatcggtcagaagactgctgacgcggagaagatgaaactc
cagacgcggagagtctgcgccatgcccgatcccttcaggggcaaccttgacgtcctggga
aaaattggccacctggcgctggtggaggacgatgacgtggccacggtcatctcctggcac
ctcttgggggacattgactgtgtggtcaccatgacaacggtggcggcacggaagatctat
gacgacacccaggggaagcagcaggtcatgcccctggacactgtgttctggaggaagaac
agcagcagacccttgccccatataaggaacggtcgggacagctttcgtcccattgggaac
cctgtgtttgcccgagacctcctaattttcccagagaatgcagagaactgccacatagtg
ttcggcaacctccttggagacaccattttgacggatgacctggactctgctaaccactac
aggaagggggtggtccagagcaaggtgccatgccccaccctcctgactcggcagggcgat
aggatccgcagcaacggcaagtttgggggcttgcagaacaaagcccctccaatagagaga
ctgcgtggccaggtgttcggcgcacccctcccaaaggactaccacacctttatgggccag
attgacctgctccagcagtaccggttggccatggaaaagagcagacaggtgcaggaggac
tttgacggccacatgcaatacctgaagtcacctgagatggtgcagaaagaagaggagatg
gatgagcaggagaagcagctcaaagacatcgagacaaagcttgccagtactccagttcgg
acgccttccgccattggggtgaaacggagtcttgacaaggccggagaatcgtccggtatg
gtaaccaagaggacgaggcggaagttattaaaacaagactattga
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