Oncorhynchus tshawytscha (Chinook salmon): 112228329
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Entry
112228329 CDS
T05605
Name
(RefSeq) rap guanine nucleotide exchange factor 6 isoform X1
KO
K08020
Rap guanine nucleotide exchange factor 6
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112228329
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RasGEF
PDZ
RasGEF_N
RA
PDZ_6
cNMP_binding
PDZ_2
Motif
Other DBs
NCBI-GeneID:
112228329
NCBI-ProteinID:
XP_042165467
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All DBs
Position
LG30:complement(38226486..38389954)
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AA seq
1697 aa
AA seq
DB search
MTMTGSMENSFKQALKKPPSLRTAEDLHTIYCHFYHMDVLSHLREHQLRSMSTSARYERH
EANQVLFYADSISTCWYTLLSGSVILKDHMYLARCCFGKQLGGRRGCECITLEPSEMIVL
GDVFQVDNASEGEEGALQREASQRRSRRRFRKVNPRGERELITDGQDPTDYVDNQLPGDL
NKMHLTDHPHSQGIHVPPSQSGCSITSDSGSSSLSDIYQATESDMGDVDLSGLPEAAVDS
EEEEEDEDLERTSDTLIGRDLVRECLEKDPVDRNDDDIEQLLEFMHQLPAFANMTMSVRR
DLCTVMVFEVVEQAATVILQDKQELDLWYVILNGGVEINHPDGRMETLCMGNSFGISPSL
DKQYMSGVVRTKGDDCQFVCIAQEDYWRILNHVEKNTHKVEEEGEIVMVKEHRELDRSGT
RKGHIVIKGTPQRLIMHLVEEPSVVDPTYIEDFLLTYRTFLSSPMEVGKKLLEWFKVDSL
RDTVTRIVLLWVNNHFNDFEGDPAMTQFLEDFEKLLETTKMKGHLRLLNIACAAKAKWRQ
ITLQKPSRESPLYFSLHGGSERGFGIFVESVEESSKAAEAGLKRGDQIMEINGQNFENIS
YVKAMDFLRNNTHLSLTVKTNIFVFKELLSRIVHEKMNRGPHIPKIQEKKSNRFSIPDLP
GDMEFPTDHKATKKMKANTVSGGRNKIRKMLEKTRFSILPPKPFSDGGMGQSQDDSIVGT
KQCRHSVAIMPIPGSSMSSSSPDLLQPATSVLDFSNTADIPDQVIRVFKADQQSCYIIIS
KDTTAKDVVSHVVNEFGLIAAPETYSLCEVSVSPEGVLKQRRLPDQLSKLADRIQLNGRY
YLKNNMETETLCSDDDAQELLKESHITLLQLSTVEVAAQLSMRDFELFRNIESTQYVDDL
FKLLDSSGGLQQTHLKQFEEVINQETFWVATEILREPNTMKRTKTIKHFIKIALHCRECK
NFNSMFAIISGLNLAPIARLRSSWEKLPSKYDKLFQDLQDIFDPSRNMAKYRNVLSSQSM
QPPIIPLFPVIKKDLTFLHEGNDSHVDGLVNFEKLRMIAKEIRHVVRMTSSNMDPALMFR
QRKKRWKSLGSLSQGSTNSNMLDVQGGAHKKRVRRSSLLNAKKLYEDAQMARKVKQYLSN
LAVETDEEKHQTISLQCEPTYSTLSKNLSERRSNKSEMSPVSLRSPLHGGKTQNRVSQVL
QVQVPLYPLRKKSTSKDIHTAHNSSSPQVIKKPSSSQHSQSDDGSCFGMRPAEDTVSTVS
SLHSSPTVSPQGSPRKVGGVANPQHNTNSQMNRSGSSSSLTSEASTKAGSRSYGIGYALM
PAGKSDNLSDSSHSEISSRSSIVSNCSVDSMPAGPAEERQCIKTRDTTETPGTTTQLTHA
NSDCSQPSSSLSLVRSQVMRGSTFTSSTSTEELAPDHASLDSVVDSGRGSWTSCSSNSHD
SFQSLPVPLLGLGRPPAWDHLAPGGFRHTQLAGPIVEVEAGPTGEEVVGAPGSGSRGGED
TKRLSRDSSELNQSQQSWASSSSLSDSYEGKYGTIKRRTADGASVAPGEGHDTPQSTAPI
YKTVTSSTEKGLIVYCVTSPTKDDRFRGPPPTPPGYQGLTLVNGQDGAPPRLPHLRPPDY
SVALQRSKLLQSPGGLVEARRLGVNHCHESQGQSRPGSVCLQGLEDSEDGMWRKTETSPS
QGQHGGPLHQAGHVVVD
NT seq
5094 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgactggatcaatggaaaattctttcaaacaagctttaaagaaacctccatca
ctacggacagcagaggacttgcacactatttactgtcacttctaccatatggatgtcctg
tcccacctcagggagcaccagctcaggtcaatgagtacctcagccaggtatgagagacac
gaagctaaccaggtcctgttctacgcagacagcatctccacatgctggtacaccctcctg
tccggttcagttatcctcaaggaccacatgtacttggccagatgctgctttggcaagcag
ctggggggcagacgaggctgtgaatgcatcactttagagccctcagaaatgattgtgctt
ggtgatgtgtttcaggtggacaatgccagcgagggtgaggagggggcactgcagagggag
gcatcccagagacgttcccgccggcgctttcgcaaagtcaacccccggggagagcgggaa
ctgatcactgacggccaggaccccacggattatgtggataaccagcttcctggagaccta
aacaagatgcaccttacagaccacccccacagccaggggatccacgtgccacccagccaa
tccggatgcagtatcaccagcgactcggggagcagtagcctatcagacatctaccaggct
acagagagtgacatgggtgacgtggacctatccgggctcccggaggcagcggtggactct
gaggaggaggaggaggatgaagacctggagaggacgtcagacaccctgattggtagagac
ctggtcagggagtgtctggagaaagacccggtggaccgcaacgatgatgacattgaacaa
ctgttggagttcatgcaccagctgccagcctttgccaacatgaccatgtcagtgcgaagg
gacctgtgtactgtcatggtgtttgaggtggtggagcaggcggcgaccgtcatcctacag
gacaaacaggagctggacctgtggtatgtgatcctgaacgggggggtggagatcaaccac
ccggacggccgcatggagaccctctgcatgggcaacagctttggcatctccccctccctg
gacaagcagtacatgagcggagtggtgcgcaccaaaggggacgactgccagtttgtgtgc
atcgcccaagaggactactggcggatcctcaaccatgtggagaagaacacacacaaggtg
gaggaggagggagagatcgtcatggtgaaggaacatcgcgagctggaccgcagcggcacc
aggaagggacatattgtcatcaagggcaccccacagcgtctgatcatgcacctggtggag
gagccgtcagtggtggaccccacctacattgaagacttcctcctcacctaccgcaccttc
ctctccagccccatggaggttggcaagaagctgcttgagtggttcaaagttgacagcctc
agagacacggtgacacggatagtgctgttatgggtgaacaatcatttcaacgactttgaa
ggtgacccggccatgacgcagttcctggaagactttgaaaagctgctggaaaccacaaaa
atgaagggtcacctgaggctgctgaacatagcttgtgcagccaaggccaagtggaggcag
atcaccctgcagaaaccttccagggagtccccgctctacttcagcctgcatggcggcagc
gagaggggcttcggcatctttgtggagtcggtggaggagagcagcaaggccgccgaggca
ggactcaaacgaggagaccagattatggagatcaatggtcagaactttgagaacatctcc
tacgtcaaagctatggacttcctgagaaacaacacacacctctccctcacagtcaagacc
aacatcttcgtgttcaaagagctgctgagccggatcgtacacgaaaagatgaacaggggt
ccccacatccccaagatccaggagaagaagagtaaccgcttctccatcccagacctgccc
ggagacatggagttccccacagaccataaggccaccaagaagatgaaggccaacacagtt
tctggaggacggaacaagatcaggaagatgctggagaagacccgcttcagcatcctacca
cccaagcctttcagtgatggcggcatgggccagtctcaggatgacagcatcgtgggcact
aagcagtgtaggcacagcgtggccatcatgcccatccctggcagcagcatgtcatccagc
agtcctgatctgctacagccagccaccagtgtgctggacttctccaacacagcagacatt
ccagaccaggtgatccgggtgttcaaggctgaccaacagagctgttacatcatcatcagt
aaggacaccacggccaaggacgtggtcagtcatgtggtcaacgagtttggccttattgca
gccccggagacctactccctctgtgaggtgtctgtcagtcccgagggtgtcctcaaacaa
cgcaggctacctgaccagctctctaagctggctgaccgcatccagctcaatggcaggtac
tacctgaagaacaacatggagacagagacgttgtgttcagacgatgacgcccaggagctg
ctgaaggagagtcacatcaccctgctccagctcagcaccgtggaggtggccgcccagctc
tccatgagggactttgagctgttccgtaacattgagtccactcagtacgtggacgacctc
ttcaagctgctggactcctcgggggggcttcagcagacacacctcaagcagtttgaggaa
gtcatcaaccaggagaccttctgggtcgccacggagatcctgagggagcccaacaccatg
aagaggacgaagaccatcaaacacttcattaagatcgccctgcactgtagagagtgcaag
aacttcaactccatgttcgccatcatcagtggtctgaatctggctccaatagctcgtctc
aggtcgtcgtgggagaagctgcccagtaaatatgataagctgttccaggacctgcaggac
atctttgacccatccaggaacatggccaagtaccgcaatgtcctgagcagccagagcatg
cagcctcccatcatccccctgttccctgtcatcaagaaggacctcaccttccttcatgaa
ggtaatgactctcacgtagacggcctggtgaattttgaaaagctaaggatgattgctaag
gagatccgtcatgtggtccgtatgacctcctccaacatggacccagctctcatgtttaga
cagaggaagaagaggtggaagagtttagggtctctgagtcagggcagcaccaactccaac
atgttagacgtacagggcggggcccataagaagcgtgtgcgtcgcagctcgctgctcaac
gctaagaagctgtacgaggatgctcagatggcccgtaaggtcaagcagtacctgtccaac
ctggcggtggagactgatgaggagaaacaccagaccatatctctacagtgtgagcctacc
tacagcaccttgtccaagaacttgagtgagcgacggtccaacaagtcggaaatgtctccc
gtgtcgctgcgctcgccgctgcacggggggaagacccagaaccgcgtgtctcaggtgctc
caggtccaagtacccctctaccccctacggaagaagagcacctccaaggacattcacacc
gcacacaactccagctctcctcaggtgataaagaagccttccagctcccagcacagccaa
tcagacgacggttcctgttttgggatgaggcctgctgaagacactgtgtccaccgtttct
tccctgcattccagccccactgtatcgccacagggctcccctcgcaaagtgggaggtgtg
gccaacccccagcataacaccaacagccagatgaaccggtctggctcgtcatcctctctg
accagcgaggccagcaccaaggcaggcagccgcagctacggcataggctatgccctgatg
cctgcagggaagtcagacaacctgtccgactccagccacagtgagatctcgtctcgctcc
agcatcgtcagtaactgctcagtggactccatgcctgctggtcctgcagaggagcgccaa
tgcatcaagaccagggacaccacagagaccccaggcaccaccacgcaactcacacatgcc
aactctgactgcagccaacccagctccagtttgtctttggtgcggagccaggtgatgcgg
ggctccaccttcacctcctcgacctccacagaggaactggcccccgaccacgcttccctg
gacagcgtggtcgacagcgggcggggaagctggacctcctgctcctccaactcccatgac
agcttccagagcctgcctgtcccccttctaggcctgggccgaccccctgcctgggaccac
ctagcgcctgggggcttccgccacacccagctagcagggcctatagtagaggtggaggct
gggccaaccggagaggaggtagtgggagcaccagggtcgggatccaggggaggagaggac
accaagaggctctccagagacagttcagagctcaaccaatcacagcagagctgggcctcg
tcatcctcgctgtctgactcatatgaggggaaatatggcaccatcaaacgccgcactgca
gacggtgcctcagttgcccccggggaggggcacgacacaccccaaagcacagcccccatc
tacaaaacggttacttcaagcaccgagaaaggcctcatagtgtattgtgtaacctctccc
accaaggacgataggttcagggggcctccccccacccctccaggataccagggcctcacc
ctggttaacggacaggatggagctcctcctcggctcccccacttgcggccgcccgactat
agcgtggccctgcagaggtctaagctgctacagagccccggaggactggtggaagcccgg
cgcctgggggtgaaccactgccacgaatcccagggccagtccaggccaggcagcgtctgc
ctacagggtctggaggatagtgaggatggtatgtggagaaagacagagaccagccccagc
cagggacaacatggaggaccattgcaccaggcaggccatgttgtagtagactag
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integrated database retrieval system
