Oncorhynchus tshawytscha (Chinook salmon): 112229848
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Entry
112229848 CDS
T05605
Name
(RefSeq) polyhomeotic-like protein 1 isoform X1
KO
K11456
polyhomeotic-like protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
112229848
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
otw03036
]
112229848
Chromosome and associated proteins [BR:
otw03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Canonical PRC1 (PRC1.2/1.4)
112229848
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-FCS_1
SAM_1
SAM_2
SAM_PNT
Motif
Other DBs
NCBI-GeneID:
112229848
NCBI-ProteinID:
XP_024251705
LinkDB
All DBs
Position
LG31:7251827..7265650
Genome browser
AA seq
904 aa
AA seq
DB search
MMETDGDQNQGSTNGTTPSGVNSRPSPMNSMSLYERQAVQALQALQRQPNAAQYFQQLML
QQQINSAQLQNLAAVQQATFAASRQSSPATNSTSQTTSTTVTSVNVTTSGGGAITSTRAI
GPGSSGTSTISQSVLLGGSAAGQGQMYLRVNRSLRAPLSSQLIFMPGSTATAAMATVTQQ
PQTQQQQQQEVTPTSSSNQSDNDQVQNLALRCVGSPKGVGVKTETPERGEIATYSLIQSS
HQQFNQSTQQSPTKPTQLQQSHIKIPTYIQSSNANLSSLNLKTGNHHSNTPSSPSTSVPL
SQLLLSGPNFGRGGAITTVNSAAAATHILVPTSSAPTQSHSYQMGAATIKPNVSTQTLVV
QPLQKSTINDKGGHGNGPIPIQPKTQQGLRMPLQLPSRNPPPILPAPPANNQTSAAQPPP
HIPVQIVGARPSSIGNPQALALVQARNACSQDGATLLNSSSSASLLTMVASIASRERGGL
GKGVGLKSLQSAQEALSLAHVSHVHAQANQSPRLNQNQNCTLATSISSQSQATISPPTLS
RSSLTLPLPLVEASSASTVVAANGESVCPQPPQGKSMKRKSESDAANEEDGPPPPHLVPM
SEHSPALSSSAMEAGTGPPSPSPVPSPSPALSVSRVGGGQGERAPPPQAVVKPHVLTHLI
EGFVIQEGAEPFPVSGPVKEPAGEDLAMDNPDASQPETVNTATVLKCEYCKSFAPARQFR
GTKRFCSLTCSKRYNVSCSQHFRLRQGLHLTHSDEDGVLRRRVPHRTSSEIASAKIAGRP
LPVKCRSESSRSDDISSCEEEEDDPMSFSPASSSSCHQPPPTLRLEGSPAPHFLPGSPAQ
WSVEEVSQFISSLQDCEELAAHFLSQEIDGQALLLLREEHLMSTMNIKLGPALKICAHIN
NLKD
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgatggagacagatggggaccaaaatcagggctctaccaatggaaccactccatcagga
gtgaactcccgcccctctccaatgaactccatgtccctgtacgagagacaggctgtgcag
gcccttcaggcgctgcagaggcagcccaacgcagcgcagtacttccagcagctaatgctg
cagcaacagatcaacagtgcccagctacaaaacctggctgcagtacaacaggccaccttt
gctgccagtcgccagtccagccctgccaccaacagcacctctcagaccaccagcacaaca
gtcacatctgtgaacgtaaccacttctgggggaggggccataaccagcacccgcgctata
ggcccaggctcttccgggacatccaccataagccaatcagtgctgctgggtgggagtgca
gcaggacagggacagatgtatctgagagtgaaccggtctctgagggctcccctctcctca
caactcatctttatgcctggtagcacggcaaccgctgccatggcaacggtcacccagcag
ccacagactcagcagcagcaacaacaggaagttacacctacttcctccagcaaccaatca
gacaatgaccaggtgcagaacctggctttgcgatgtgtcggcagtcccaagggggtcggg
gtcaagactgaaaccccagagaggggtgaaatagcaacctactcccttatacagtcatct
caccagcagttcaaccagtccactcagcagtctcccactaaaccaacccaactgcaacag
tcccacatcaagatccccacctacatccagagctccaacgccaacctctcctctctcaac
ctcaagacgggcaaccaccactctaacaccccctcctcaccctccacctctgtcccactc
tcacagctcctcctttccggacccaactttggccggggcggggctatcaccacggtgaac
tcggccgccgcggcgacgcacattctggtgcccacctccagtgcacccactcagtcccac
agttaccagatgggtgctgccaccatcaagcccaatgttagtactcaaacgctggtggtt
cagcctctgcagaaaagcactattaacgacaagggaggccatgggaacggtcccattcca
atccagcccaaaactcaacagggtctccgtatgccactgcaactgccctcccgcaaccca
cctcccatcctccccgcgccccccgccaacaaccagactagtgccgcccagcctccgccg
cacatcccagtccagatagtaggggccaggccaagctccataggaaacccccaggctttg
gccttggtccaggcccggaacgcctgttcccaggatggagctacccttctaaatagctcc
agcagcgccagcctcctcaccatggtggcctccatcgcatccagagagagagggggttta
ggcaaaggggtgggtctaaagagccttcaatcagcccaggaagccctctcattggcccac
gtttctcacgtgcatgcacaagccaatcagagtcctaggctgaatcaaaatcaaaattgc
accttggccaccagcatctcctctcagtcccaggccaccatctctcctcccaccctctcc
cgttcctccctcactctacccctgccgttggttgaggcgagcagtgcatccactgtagtg
gctgccaatggagagtctgtgtgtcctcagcctccccagggtaagtcgatgaagaggaaa
tccgagtcagacgcagccaatgaggaagatggtcccccccctccccaccttgttcctatg
agtgaacactcccctgctctctcctcctccgccatggaagcaggcactggtccaccttct
ccctctcccgttccctctccttcccctgccctctcagtgtcccgtgtggggggtggccag
ggggagagagccccccccccacaggctgtggtcaaaccccacgtcctcacccacctcata
gagggcttcgtcatccaggagggagctgaacccttccctgtgagtgggccagtgaaagag
ccagctggagaagatttggcaatggacaatccagacgccagtcagcctgagactgtgaat
acagctacagtgctgaagtgtgagtactgcaaaagcttcgccccagccagacagtttaga
gggaccaagcgcttctgctccttgacctgttccaagaggtataacgtgagctgcagccag
cacttccgcctgcgacaggggcttcacctcacccactctgacgaggacggagtcctgagg
aggagggttccccacaggaccagctccgagatcgccagtgccaaaatagccgggagaccc
ttaccagtcaagtgccgctccgagtccagccgttcggacgacatctccagttgcgaggag
gaagaggacgacccgatgtccttctccccggcctcctcctcttcctgtcatcagcctccc
cccacactccgattggagggctcaccggcgccccacttcctgcccggcagccctgcccag
tggagtgtggaggaagtgtctcagttcatatcatctctgcaagactgtgaggagctggcg
gcccatttcctgtcccaggagattgatggacaggccctgctgctgctcagagaggagcat
ctcatgtccaccatgaacatcaagctcggtcccgccctcaagatctgtgcccacatcaac
aacctgaaagactga
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