Oncorhynchus tshawytscha (Chinook salmon): 112230198
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Entry
112230198 CDS
T05605
Name
(RefSeq) low-density lipoprotein receptor-like
KO
K12473
low-density lipoprotein receptor
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03272
Virion - Hepatitis viruses
otw04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
112230198
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
112230198
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
otw04131
]
112230198
Membrane trafficking [BR:
otw04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
112230198
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
DUF5050
EGF_3
EGF
hEGF
Gemini_mov
Motif
Other DBs
NCBI-GeneID:
112230198
NCBI-ProteinID:
XP_042160411
UniProt:
A0AAZ3NZM6
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Position
LG02:complement(73291688..73314136)
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AA seq
877 aa
AA seq
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MLPTRVGITGLTACCLVLLSHCFAPTDAAYTCGTSQFRCGNGKCITSRWVCDGGDDCGDG
TDELPAACEAKTCLPTEFSCGGPLNKCVSGTWHCDGKADCDNGADEKGCAAKNCTDNEFR
CSNGQCIAVSFVCDKDNDCSDGSDETSCPTATCGPNAFQCNNTVCVPRLWACDGDADCAD
GSDEWPQNCGGRDTKPTTKPCGPHEFHCGSGECIHRSWSCDGGKDCQDNSDETNCSRPTC
QPDEFQCNDGSCIHGSHQCDRQFDCRDLSDEMDCKSVDACEGPNNFRCKSGECITVDKVC
NGKKDCRDMSDEPIRECGNNECLTNNGGCSHTCTDLKIGFNCSCPAGYSLGKDNRKCEDI
DECADPDTCTQICVNILGSYKCECEEGYELDPKTKTCKAATGTVPYLLFTNRHEVRKMTL
DRREYVPLIPRLKNVVALDMDMPGHKIFWSDLYHRKIYSADMNLAGNSSHHNVVIDSQME
SPECLAVDWIHGNIYWTDSELQTISVATTDGTRRKTVISEGLEKPRSIVVDPANNFMYWT
DWGNEAKIEKSGLNGADRVALVTDNIMWPNGITLDMVNQRLYWVDSKMHTLSSIGVNGEG
RHTLIYNEDKLAHPLSLAVFEEKVFWTDMGDRAVMSANRLTGNDITVLAEDLMQPEDIIV
YHNLKQPIGKNWCTEKNFVNGGCEFLCLPAPQINQHSPKYTCACPDHMTLGLDMRKCVAA
PTTTAPSTTPKTAAPIPTRAPTKQPAGPTSTTTTTTTTTSSARRAQPQDPDRSSTTHSPQ
ETAVTGQSGYVAMPKVAEASYHTVLYIVLPIMMMCLVLFGAVLLWRHWRLKNTNTIHFDN
PVYQKTTEDELHICRNHSQDGYTYPQRQMVSLEEDLA
NT seq
2634 nt
NT seq
+upstream
nt +downstream
nt
atgctaccgactcgtgtgggaatcaccgggctgacagcatgttgcctggtgttgctctcc
cactgttttgctcctacagatgctgcgtatacatgtgggacaagtcagttcaggtgtggc
aacgggaaatgtatcaccagccggtgggtgtgtgacggaggtgatgactgtggtgacgga
actgacgagctgccagccgcctgtgaggctaagacctgcctgcccactgagttcagctgc
ggaggcccactgaacaagtgtgtctccggaacgtggcactgtgatggcaaagctgactgt
gacaatggagctgatgagaagggctgtgccgcaaagaactgcaccgacaacgagttccgc
tgctccaacggtcagtgcatcgccgtctccttcgtgtgcgacaaggacaacgactgttcc
gatggttctgacgagacttcctgtcccaccgccacctgcggtcccaacgccttccagtgt
aacaacactgtgtgtgtaccgcgtctctgggcctgcgacggcgacgccgattgtgccgac
ggttcagacgagtggccccagaactgtggcgggagggacaccaaaccgacaacaaagccc
tgtgggccacatgaattccactgtgggagtggggagtgtatccataggagttggagctgt
gatggaggcaaggactgtcaggataattcagatgaaaccaactgcagtcggcccacttgc
cagccagatgagtttcagtgtaatgatggctcctgtatccatggtagccatcagtgtgac
cggcagtttgactgcagggatctgagtgatgagatggactgcaagagcgtggatgcgtgt
gagggcccgaataacttcaggtgtaagagtggggagtgcatcaccgtggacaaggtgtgc
aacgggaagaaagactgccgagacatgtccgacgaacctatccgggagtgtggaaacaac
gagtgtttgaccaataacggcggttgctctcacacctgtaccgacctgaagattggcttc
aattgctcctgtcctgctgggtacagtctggggaaggacaacaggaaatgtgaagacatt
gatgagtgtgctgacccagacacctgtacccagatctgtgtgaacatcctgggaagttac
aagtgtgagtgtgaggagggatatgaactggaccccaagaccaagacctgcaaggctgcc
acaggtactgtcccctacctgttgttcaccaaccgccacgaggtgaggaagatgactctg
gaccgtagagagtacgtccctctcatccccagactgaagaacgtggtggccctggacatg
gacatgcctggacacaagatcttctggtctgacctgtaccacaggaagatctacagcgcc
gacatgaacttggcagggaactcctcccaccacaacgtggtgattgacagccagatggag
tcgccggagtgcctggccgtcgactggattcacggtaacatctattggacggacagtgag
ctccagaccatctccgtggcaaccacagacggaacacggcgaaagacagtgatcagcgaa
ggactggagaaaccaagaagcatcgtggtggacccagccaataacttcatgtactggact
gactggggcaacgaggccaagatcgagaagagtgggctgaacggagccgaccgcgtcgcc
ttggtaacggacaacatcatgtggcccaacggcatcactcttgacatggttaaccagcgt
ctgtactgggtggactctaagatgcacaccctctccagcatcggcgtaaatggagaagga
cgacacacactcatctacaacgaggacaagctggctcaccccctctctctcgccgtcttc
gaggagaaagtattctggaccgacatgggtgacagagcggtcatgagcgccaaccgcctg
acaggaaatgacatcactgtactggcggaggacctgatgcagccagaggacatcattgta
taccacaacctcaagcagcccatcggaaagaactggtgcacagagaaaaactttgtgaat
ggaggttgtgagttcctatgtctacctgctccccagatcaaccaacactcccccaaatac
acctgtgcctgtcctgatcacatgaccctcggcctggacatgaggaagtgtgtggcagct
ccaacaactaccgctccctccaccactcccaaaactgcagctcccatccctaccagggcc
ccaaccaaacagccagccggccccacttccaccacaactacaactaccacaactacctcc
tccgcccgccgggcccagcctcaggaccctgataggtcctcgaccactcacagtccacag
gaaactgcggtcacaggtcaaagtggctatgttgccatgcccaaagtagctgaggcatca
taccatactgtgctctacattgtcttacctatcatgatgatgtgcctggtgctgtttggt
gcagtgttgctatggagacactggaggctgaagaacaccaacaccatccactttgacaac
cccgtgtaccagaagaccacagaggacgagttgcacatctgtagaaaccacagccaggac
ggatacacctacccacagagacagatggtgagcctggaagaagacctggcatga
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