KEGG   Oncorhynchus tshawytscha (Chinook salmon): 112230200
Entry
112230200         CDS       T05605                                 
Name
(RefSeq) tumor necrosis factor
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
otw  Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04010  MAPK signaling pathway
otw04060  Cytokine-cytokine receptor interaction
otw04150  mTOR signaling pathway
otw04210  Apoptosis
otw04217  Necroptosis
otw04350  TGF-beta signaling pathway
otw04620  Toll-like receptor signaling pathway
otw04621  NOD-like receptor signaling pathway
otw04622  RIG-I-like receptor signaling pathway
otw04625  C-type lectin receptor signaling pathway
otw04920  Adipocytokine signaling pathway
otw05132  Salmonella infection
otw05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:otw00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    112230200
   04350 TGF-beta signaling pathway
    112230200
   04150 mTOR signaling pathway
    112230200
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    112230200
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    112230200
   04217 Necroptosis
    112230200
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    112230200
   04621 NOD-like receptor signaling pathway
    112230200
   04622 RIG-I-like receptor signaling pathway
    112230200
   04625 C-type lectin receptor signaling pathway
    112230200
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    112230200
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    112230200
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    112230200
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:otw04052]
    112230200
   00536 Glycosaminoglycan binding proteins [BR:otw00536]
    112230200
Cytokines and neuropeptides [BR:otw04052]
 Cytokines
  Tumor necrosis fators
   112230200
Glycosaminoglycan binding proteins [BR:otw00536]
 Heparan sulfate / Heparin
  Cytokines
   112230200
SSDB
Motif
Pfam: TNF Mobilization_B
Other DBs
NCBI-GeneID: 112230200
NCBI-ProteinID: XP_024252158
LinkDB
Position
LG23:complement(9749292..9751521)
AA seq 246 aa
MEGYAMTPEDMERGPVYNTTVTAVAEGKASRGWLWRLCGVLLIAVLCAAAALLFAWCQHG
RLATMQGKMEPQLEILIGAKDTHHTLKQIAGNAKAAIHLEGEYNPNLTADTVQWRKDDGQ
AFSQGGFELQGNQILIPHTGLFFVYSQASFRVKCNGPGEHTTPLSHIIWRYSDSIGVNAN
LLSGVRSVCQRNYGDAESKIGEGWYNAVYLGAVFQLNEGDKLWTETNRLTDVEPEQGKNF
FGVFAL
NT seq 741 nt   +upstreamnt  +downstreamnt
atggaagggtatgcgatgacacctgaagacatggagaggggccctgtgtacaacacaacg
gtgacagctgtcgctgagggaaaggcctccagaggttggctatggaggctgtgtggggtc
ctcttaatagcagttctatgtgcggcagcagccctactctttgcatggtgtcagcatgga
agactggcaacgatgcagggcaaaatggagcctcaactggagatactcattggtgcaaaa
gatacccaccatacattgaagcagattgccggcaatgcaaaagcagccatccatttagag
ggtgaatacaatcctaatcttaccgctgacaccgtgcagtggagaaaggatgacggccag
gctttttcccagggcgggttcgagcttcaggggaaccaaatcctcatcccacacactggg
ctcttcttcgtttacagccaggcttcgtttagggtcaagtgcaatggcccgggcgagcat
accactcctctgagtcacattatttggcgctattcggactccatcggggttaatgctaat
cttcttagcggggtaaggtcagtttgtcaacgaaactacggtgatgctgagtccaaaatt
ggcgaaggctggtacaatgcagtttaccttggtgcggtgtttcagctgaatgaaggggac
aaactgtggactgagaccaatcgactgaccgacgtggagcctgagcagggcaagaacttc
tttggtgtgtttgcactgtga

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