Oncorhynchus tshawytscha (Chinook salmon): 112230696
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Entry
112230696 CDS
T05605
Name
(RefSeq) telomerase-binding protein EST1A-like
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
112230696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
otw03019
]
112230696
03032 DNA replication proteins [BR:
otw03032
]
112230696
Messenger RNA biogenesis [BR:
otw03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
112230696
mRNA cycle factors
Common to processing body (P body) and stress granule
112230696
DNA replication proteins [BR:
otw03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
112230696
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
Motif
Other DBs
NCBI-GeneID:
112230696
NCBI-ProteinID:
XP_042167163
LinkDB
All DBs
Position
LG33:complement(39252746..39282772)
Genome browser
AA seq
1391 aa
AA seq
DB search
MEKLSVTVPAGREEGDERGEGQEVDRRKKASVEGRRSRGVEGGGEKTEEKKRERGNRRNR
GGGGEKGGNQDSKRRGRGEGGGGKGGRVIKERNKRESEGDKEEEANRPADTQPTKGREKQ
RDKETEREDPRDREMERDKQRGNNRPRDREREEPRDREMERDKQRGNNRPRDIDREREEP
RDRDKQRGNNRPRDIDRERDGEMERNRERPAEGNERSRANTSPNNNHHHPSSSSKRYSKS
DIRRPRNRTYSTSSASSGTSLDGPGLGQGGGLGEDRARRDRLGRRERERGEGGGGQLQNR
RRSTRDSSTDSLEESKVGEWMDERRRRRRDGGEEDWSPERRKRGEESRGTGGRHRGGGGR
GGLLRISHSDRQSGSSQATSGPGEDPQGRRRQGTGPRSRGRGILILPAHTNLSNLPAEPG
PRLLFGGIRGGRDAGLGRGGGRGGGTRRLWDPNNPDQKPALGLSQHASLQQQPMYLQTGV
GYGALHFLDTDDEAAGSPPVLQGEHFHLQQQAAARAQAFYKYQNSDNPYPYNANPNPNTR
YPYPYHTMPAGPYQVPPSNDMYHPGQFYGGYRGQGYPDGPEALAGGGSGAGVTPEEAGQH
ARGELGRLLRAADSQELQLTNLLSRDRLSADGLDRMAQLRADLLTLYERVILTDIEFSDS
QNLDQALWKNVFYQVIERFRQLLKDPSGDSAPRITTMLLTLLDEGAVFFDALLQKLQMVF
QFKLEDYMDGMAIRPRPLRKTVRYALISAQRCLICQGDIARYREQASDSANYGKARSWYL
KAQQIAPKNGRPYNQLALLAVYTKRKLDAVYYYMRSLAASNPILTAKESLMSLFEEAKRK
ADQMGRKQESEGGSRGPGVQGGGRGRGEPGARVEIWLRPVVQAGALSSHRGGSESSRDSE
QDGELGNLSASDLNKRFILSFLHAHGKLFTKVGMESFPEVVSRVLQEFRVLIQHSPSPLG
STRMLQIITINMFTIHNAQSRGGDGEVRSVLQEQTTALGLAMFSLLVQRCTELLRDTPAE
SIPEEEREDGDEWEEGMVRVSAFPLDLRELLPSVKVWSDWMLGHPDQWNPPPCSIEDTAI
AADCKRVTVLKYFLEALCGQEQPLLAFKGGKYVSMATSPQPSSPGDAHSRHDSLTERESD
DVIVEAESSVSEGDEGGGSEDDIRELRARRSALTNRLAQQQRRRDKIQAVLQTCGQLELE
VRPLFLVPDTNGFIDHLTGLKTLLQSGTYILVVPLIVITELDGLAKGQESCGGSGGGHGG
GGSRGNPGATHARAVQEKAKVAVAFLERGFEAREPCLRALTSRGSQLESIAFRSEDTSGQ
QGNNDDVILSCCLHYCKDKAKDFMPAKRDGPVRLRREVVLLTDDRNLRVKALTRNVPVRD
IPAFLTWAKVG
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atggagaaactcagtgtgactgtcccagccgggagagaggagggggatgagagaggagag
ggtcaggaagtagacaggaggaagaaggctagcgttgagggcaggaggagcagaggagtt
gagggaggaggtgagaagacagaggagaagaagagagagaggggaaaccgcaggaacaga
ggaggaggaggggagaaggggggcaatcaggactccaagagaagaggaagaggggaagga
ggaggggggaagggtgggcgagtgattaaagagagaaataagagagagtcagagggggac
aaagaggaggaagcaaaccgtcctgcagatacacagccaacaaaaggaagagaaaaacag
agggataaagagacggaaagagaggacccgagggacagggagatggagagggacaagcag
agagggaacaacagaccccgagacagagaaagagaggaaccgagggacagggagatggag
agggacaagcagagagggaacaacagaccccgagacatagacagagaaagagaggaaccg
agggatagggacaagcagagagggaacaacagaccccgagacatagacagagaaagggat
ggagagatggagagaaacagagagaggccagcggaggggaatgagaggagcagagccaac
actagtcctaacaacaatcaccaccacccatcatcatcctctaagcgttactccaagtca
gacatcagaagacccaggaaccgcacctacagcaccagctctgccagcagtggcaccagt
ctggacggacctggactgggacagggagggggtttgggggaggacagggcccgacgagac
cggttggggcgcagggagcgagagagaggggagggaggaggaggtcagctccagaacagg
aggagaagcactagagactcctctactgactcactggaagagagcaaggtgggagaatgg
atggatgagaggaggagaaggaggagagacggaggagaggaggactggagcccggagagg
aggaagaggggggaggagagcagagggacaggagggaggcacagaggaggaggagggaga
ggaggtctcctgagaatatctcacagtgacagacagtcaggctcctcccaggctacctca
ggccctggcgaggacccccaggggcgacgcagacagggcactgggcctcgcagcaggggg
aggggcatcctcatcctccccgcccacaccaacctctccaatttgccggcggagcccggg
ccgaggcttctgtttggtgggatccgtggaggaagagatgcggggctagggagaggagga
ggaaggggcggaggaactaggcgtctctgggacccaaacaaccccgaccagaaacctgcc
ctcgggctctcccagcatgcatcgctccagcagcagcccatgtacctgcagacaggcgtt
ggttacggagcgctgcacttcctggatacagatgacgaggctgcagggagtcccccggtc
ctccagggggagcacttccacctccagcagcaggctgcagccagggcccaggccttctac
aagtaccagaactctgacaacccttacccttacaacgccaaccctaaccccaacacacgc
tacccctacccttaccacactatgcccgccggcccttaccaggtccccccctctaacgac
atgtaccacccgggtcagttctacggggggtacaggggccaggggtacccggatggaccc
gaggctctagcagggggtggatccggagcaggtgtaacccctgaggaggctgggcaacat
gccagaggagagctggggagactgctgagagctgcagacagtcaggagttacagctcact
aacctgttgtctcgagacagactcagtgctgatggactggaccgcatggctcagctcaga
gctgacctgttgaccctgtacgagcgggtgatcctaacagacatagagttcagtgacagc
cagaacctggaccaggctctatggaagaacgtgttctaccaggttatagagcgcttcaga
cagctcctcaaagaccccagtggagactcagctccgcgcatcaccaccatgctactgaca
ctgctggacgagggggcagtattctttgatgcgctgctgcagaagcttcagatggtgttt
cagtttaaactggaggattacatggacggcatggccatcagaccacgaccactacgcaaa
acggtgaggtatgctctgatcagtgcccagcggtgtttgatctgtcagggggacatcgcc
cgttaccgggagcaggccagcgactcggctaactacggcaaggcccgcagttggtacctg
aaggcccagcagattgctcctaagaacggacgaccctacaaccagctggccctgctggct
gtctacacgaagaggaagttggatgcagtgtattattacatgcgtagcctggcggcctcc
aatcccatcctcactgccaaggagagcctcatgagtctgtttgaagaggccaaacgcaag
gcagaccagatggggcggaagcaggagtcagaagggggttccaggggcccgggggtccag
ggtggaggaagaggacggggggagccgggggccagagtagagatctggcttcgccctgtc
gtccaggcaggggctctctcatcgcaccgcgggggcagcgagtccagcagagactctgaa
caggacggagagctcggcaacctcagtgctagtgatctcaataagaggttcatactcagc
ttcctccacgctcatggaaaactcttcactaaagtgggcatggagtcgttcccagaggtg
gtcagtcgtgttctccaggagttcagagtgctgatccaacacagcccctcccccctgggc
agcacacgcatgttacagatcatcaccatcaacatgttcactatacacaacgctcagagc
agaggaggagatggtgaggtgaggtctgttttacaggaacagactacagctctgggtctg
gccatgttctctctgctggtccagcgctgcacagaactactgagagacacgcctgcagag
tccatccccgaggaggagagagaagatggggatgagtgggaggaggggatggtgagagtt
tctgccttcccattggacctgagggagttgctgcctagcgttaaagtctggtctgattgg
atgcttggacaccccgaccaatggaatcctccgccttgtagtatagaggataccgcaata
gcagcagactgtaaaagggtaacagtgttgaagtatttcctggaggctctgtgtggacag
gaacaacctcttctggccttcaagggagggaagtatgtctccatggcaacctctccccaa
cccagcagccctggcgacgcccacagtcgacacgactcactgaccgagagagagagcgat
gacgtcatcgtggaggcggagtcgtctgtttccgagggggatgagggcgggggcagcgaa
gatgacatcagagagctccgggccagacgcagcgccctcactaacagactggctcagcag
caacgacgcagggacaagatacaggcggtgttacagacgtgtggtcagttggagttagag
gtacgtcctcttttcctggttccagacaccaatggcttcatcgaccacctgaccggcctc
aagacgctgctgcagtctgggacttacatactggtggtgcccctcatagtgataacagag
ttggatggtctggcgaagggtcaggagagctgcggaggctctggcggtggtcatggcggc
ggtggttcccgtggtaaccctggcgcaactcatgcgcgggcggtccaggagaaggccaag
gttgccgtggcgtttctggagcgagggttcgaggccagagagccctgtctcagagcgctg
accagcagaggaagtcaactggagtctatcgccttccgcagtgaagacacctccggacaa
caggggaacaatgatgatgtcatcttgtcctgctgtctccactactgcaaagacaaggct
aaggacttcatgcctgcaaagagagacggtccggtgcggttgcgtcgggaggtggttctt
ctgacagatgaccgtaacctgcgggtcaaagccctgaccaggaatgtgccggtcagagac
atccccgcattcctcacctgggccaaagtgggctga
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