Oncorhynchus tshawytscha (Chinook salmon): 112231461
Help
Entry
112231461 CDS
T05605
Name
(RefSeq) rho guanine nucleotide exchange factor TIAM1-like
KO
K05731
T-lymphoma invasion and metastasis-inducing protein 1
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04530
Tight junction
otw04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
112231461
09142 Cell motility
04810 Regulation of actin cytoskeleton
112231461
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
otw04990
]
112231461
Domain-containing proteins not elsewhere classified [BR:
otw04990
]
Pleckstrin homology (PH) domain-containing proteins
Dbl-Like RhoGEF family proteins
112231461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RhoGEF
Tiam_CC_Ex
PH
RBD
PDZ
PH_9
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
112231461
NCBI-ProteinID:
XP_042167187
LinkDB
All DBs
Position
LG33:46870419..47075214
Genome browser
AA seq
1769 aa
AA seq
DB search
MGNVESQNGDSGFYGNEKGHLSRKHTSRSLRLSTKHQQQNPSRRSLRPSAGKSEHRNSEA
STRSSSTPSIPQSLVENGLEPFNQTDELGEFGINPHWTDRVAMTMRPSESFPHDDDDLTG
DPSLATPTPETSEVVLEREGAEEEGATTYPAEGDDAEIETDGEVRYLQRVNEGPREEGSC
KKKRSKSADMWRDDSQEFSLSDLSQDHLTSTEEIIDGGEEEEGEEEEEEEERASSRGTAG
SAERASSLDHLCSERSQTVLRGTHNRYAKNHRDGELTAHRGRDGEGDEGLISPQEEEGSG
YGAFTLPCRRSHCLSEGLSGHQVVPCPTFQGRRAQTTQDISGVLGEGSEYGDSGIDGVAT
ETDGEVGTGSRRRCKAMSASFSVYSAAGSSAFNGSDSGSSSGGGEGGGGRGGEGGGGRGG
EGGGRGGGGRKGGWGMYENFHQDFENQHWTHRERDCAEEVGSAESDERSSGTLSTAYPSD
ALIGCCAQGTVRKAGALAVKNFLVHKKNKKVEPATKRKWKHYWVCLKGCTLFLYETDGRS
GIDHHSVPKHAVWAEYSILQAVPEHPKKDFVFCLSNSLGDAFLFQTSGQTELENWITAIH
SACAAAVARQHHREDTVRLLRTEIRKLEQKIDMDEKMKKMGDMQLSAVTDNKKRKTILEQ
IFLWEQNLEQFHLDMFRCRCYLASLQGGELPNPKRLLAVASRATKQAMGRLGIFSVSSFH
ALVAVRTESTVRKRSQAMPRPSSKRRSRFSSLWGLDTTSKKKVKGRPSINQVFVAGGEPV
IKPTVSEISKEEGSLKMIPQDSVDSEIWVPDYLAPSWVCLPNDQPVLVVIQPGETAEDTL
DAVCKAHKLDPSNFYLRLKVCEEDQLLLYVPKMEEDISDLLYKEIEICPKTTKLIRFDKA
ESCTLGYGFSIAVVDEEGTQQLHITEVNAGGLASAKGLHAGDEILLLNGKPASALGVVDM
RSALVGPSLSLSVSTLPTLDPRDLCPFPPRRSNTAEYDTCTDIYSQSQEDILDEVSGLTV
VSPDDTLEDESALDLENSGHNQADYTEPGQKSTEQVTAYCRSLHEMNPSHASPQSSSSCS
SSLSPSQAVPVTAGIAIQRQLSHADKLRKVISELVETERTYVKDLGCLIERYLTPLQKER
FLTQDELDVLFGNLGEMLQFQVEFLKTLEDGTRLVANLDKLERVEQFKKVLFSLGGSFLY
YADRFKIYSAFCASHTKVPKVLAKAKTDADFKAFLAERNPKQQHSSTLESYLIKPIQRIL
KYPLLLRELYSLTDPDSEEHYHLNVAMKAMNKVASHINEMQKLHEEYGAVFDQLINETTT
DRKEVSDLSMGDLLLHSTLVWINPPASLVKGKKDPELATFVFKTAVVFVYRDRSKQRKKL
GASHRPAVSDDRVPFLFRHMISTDSLQVRALTNSEGTAVCEIVHVRSESEGRPERTFHLC
CSSVDSKKDFLKTVHSILRDKQRRQLMKTESLPLNQQYVPFGGKRLCNLKGNRPAMNRAV
SAPSRTLGRRKLVRNRFTIDTDLVLHDNHEDSNPTHSTHDHSHQPPHSHQHPHSHQPPHS
HQPPHSHNPLLPTQMPQQQTLLATGGDTDRWVEEQFDLGCYDDQGGVTGERMEGGIEGRM
EVKETDILSDDDEYCKSVRASSTEPSLLEERMEGVTLEERSQDQDRGVDEEEEEGKKEVE
EERRSSQGILQEDKWGERGESQVDSVSPAPPPSRSPAPPVKLIPLRKQWAVEGVAGKQCS
VEGVAKRDHCDVIWVRREDYANGGNNDVF
NT seq
5310 nt
NT seq
+upstream
nt +downstream
nt
atggggaatgtggaaagtcagaatggtgacagtggtttctacgggaacgagaaaggtcac
ctgtcccgaaagcacacgtcccgatccctccgcctctccaccaagcatcagcagcagaat
cccagtcgacgctccctccgaccctcggcaggaaagtcggaacatcggaattccgaagcc
agcacccgctcttccagcacgcccagtatcccacaatccttagtggagaacggcctggaa
ccttttaaccagacagacgagctgggggagtttggaatcaaccctcattggactgaccgc
gtcgccatgacgatgaggccttccgagtccttcccgcacgacgacgacgacctcaccggt
gacccctctttagccacgcccactccggaaacctccgaggtcgttctggaacgcgaagga
gctgaggaagaaggagcgacgacgtacccggcagaaggggacgacgcagagatagagacg
gacggagaggtgcggtacctccagagggtgaacgagggaccgagggaagaaggaagttgt
aagaagaagaggtcgaaatcagcggacatgtggagagacgacagtcaggagttctctctg
tcagatctcagccaggaccacctcacctccactgaagagattatagatggaggagaggaa
gaggagggggaagaggaggaagaggaggaagagagagccagttccagaggaacagcaggt
tctgcagagagagcctcatcactagaccacctgtgtagcgagcgcagccagacggttctg
cgaggaacacataaccgctacgccaagaaccaccgggacggggaactcaccgcccacaga
ggaagggatggagagggggatgaagggctgatctcgccccaggaggaggagggaagcggg
tacggggcctttacgctgccctgtcggaggtcccactgtctgtctgaaggtctgtcagga
caccaggtggtaccgtgtccgaccttccagggtcgaagggcacagacgacacaggacata
tcgggcgtgctgggagagggcagtgagtacggcgatagcggcatcgacggggttgccacg
gagacggacggggaagtggggacggggtcacggcggcgctgtaaggccatgtcggcctcg
ttctccgtctactccgctgccgggagcagcgcgtttaacggaagtgacagtgggagcagc
agtggaggaggagagggaggaggaggaagaggaggagagggaggaggaggaagaggagga
gagggaggaggaagaggaggaggggggagaaaaggaggatggggaatgtatgagaacttc
catcaggactttgagaatcaacactggactcatcgagagcgtgactgcgcggaggaggtg
ggctcagctgagagtgacgagcgtagcagcggcacactaagcacggcttacccatcagac
gctctcattggctgctgtgcgcagggcacggtgaggaaggcgggagctctggcagtgaag
aacttcctggttcacaagaagaacaagaaggtggagccagccaccaagaggaagtggaaa
cattactgggtgtgtctcaaaggatgcactctgttcctgtacgagactgatgggcggtcg
gggatcgaccatcatagtgttcctaaacacgcggtgtgggctgagtacagtatccttcag
gccgtacctgaacaccccaagaaggactttgtcttctgcctcagcaactctctaggggat
gcatttctcttccagacgtcgggccagacggaactggagaattggatcacggcgatccac
tcagcgtgcgcggctgccgttgctaggcaacatcaccgggaggatacggtgcgattgcta
aggacagagatcaggaaactggagcagaagatagacatggacgagaagatgaagaagatg
ggagatatgcagctgtctgcagtgacagataacaagaagagaaagactattctggaacag
atcttcctgtgggagcagaatctagagcagttccacttggacatgttcaggtgtcgatgt
tacctggccagtctgcagggaggggagctgcccaaccctaaacgcctgctagccgtggcc
tccagagccaccaaacaggccatgggacgcctgggaatcttctcggtgtcttcctttcat
gcgctggtggcggtgcgaacagagagcacggtgaggaagcggtcccaggctatgccccgc
ccctctagtaaacgtcggagtcgcttctcttccctctgggggctggacaccacatctaag
aagaaggttaaaggtcgacccagcatcaaccaggtgtttgttgctgggggggaaccagtg
atcaaaccaacggtcagtgagatatcgaaggaggagggttcattgaaaatgattccccag
gacagcgtggacagtgagatttgggttcctgactacctagccccatcctgggtgtgtcta
cctaacgaccagcctgtgcttgtcgtcattcaaccaggggagactgcagaagatacgctg
gacgctgtctgcaaggcccataaactggacccgtctaacttctacctgcgtctgaaggtg
tgtgaagaggatcagctgctgctatatgttcccaaaatggaagaagacatctctgatctg
ctctacaaagagattgaaatatgtcccaaaaccaccaagctgatccgcttcgacaaagct
gagtcctgcacgttgggatacggtttctccatagcagtagtagacgaggaggggactcag
cagctccatatcactgaagtaaatgcaggaggactggcttctgctaaaggcctgcatgcg
ggtgatgagatcctgttgttaaatggtaaaccggcgtcggctctgggcgtggtggatatg
aggtcagcgttagtcggcccctcgttgtccctgagcgtgagcaccctgccgacccttgac
ccccgcgacctctgcccttttccccctcgacgctccaacacagcagaatacgacacttgt
acagacatctattcccagagccaagaggacattctggatgaggtatcagggttgacggtg
gtcagtccagatgatactttagaggatgagtcagctctggatctggagaattcaggacac
aaccaggcggactacactgagccaggacagaagagtactgagcaggtgactgcatactgc
cggagtctccatgagatgaatccttcccatgcttcccctcagtcttcctcgtcctgctct
tcctccctctctcccagccaagcggtgccagtgacggcgggcattgccatccagagacag
ctgtcacacgccgacaaactacgtaaagtcatcagtgaactggtggagactgagaggacc
tacgtcaaggacctgggctgtctgatagagcgttacctaactcctctgcagaaggaaaga
ttcctcacccaggatgagctcgatgtcctgttcggtaacctaggagagatgctgcagttc
caggttgagttcctgaagactctagaagatgggaccagactggtagccaacctggacaag
ctggagagagtagaacagtttaagaaagtgctgttctctctgggtggatcgttcctgtac
tacgccgaccgctttaagatctacagcgctttctgtgccagccacaccaaggtgcccaag
gtcctggccaaagctaagacagatgcagacttcaaggcattcctggcagagaggaacccg
aaacagcaacactcttcaactctggagtcctacctgatcaaacccatccagaggatcctg
aagtacccactactactgagagagctgtactcactgacggaccctgatagtgaagaacac
tatcacctgaatgttgcgatgaaggccatgaacaaggtggccagtcacatcaatgagatg
cagaaacttcatgaggaatacggagccgtgtttgaccagctcatcaacgagacgaccacc
gaccggaaggaggtatccgatctatccatgggagatcttctcctccactccaccctggtg
tggatcaatcctccagcctcccttgtcaagggcaaaaaggaccctgagctggctaccttc
gtgtttaagaccgcggtggtctttgtgtacagagatcgctccaagcagaggaagaagctt
ggcgcgtctcatcgtcctgctgtgtcagatgacagagtcccgttccttttccgtcacatg
atctcaacagactccctacaagtccgcgccctcacaaactctgagggtacagcggtgtgt
gagatagttcatgtgaggtcagagtctgagggcagaccagagagaacctttcacctgtgc
tgcagttctgtggacagtaagaaggacttcctgaagacagtccactccatcctgagagat
aaacaacgacgtcaactgatgaagactgagtctctacccctcaaccagcagtatgtcccc
ttcggaggaaaacgcctctgtaacctcaagggaaacagaccggccatgaacagagcagtc
tcagccccgtctcggacccttggtcgcaggaagctggttagaaaccgattcaccattgac
accgacctcgttctccatgacaaccacgaagactctaaccccacccactctacccatgac
cattcgcaccagcctccacattcccaccagcatccacattcccaccagcctccacattcc
caccagcctccacattcccataaccccctgcttcctacccagatgcctcagcagcaaacg
ctgttggcgactggaggcgacacggaccgctgggtggaagaacagttcgacctgggttgc
tacgacgaccagggaggagtgacgggggagaggatggagggagggatagagggaaggatg
gaggtgaaagagacggacattctgagcgacgacgacgagtactgcaagtcagtcagggct
tcatcaaccgaacccagcctcctggaagagaggatggagggagtgactctagaagaaagg
agccaagaccaggacagaggggtagatgaggaggaggaggagggaaagaaagaagtagag
gaagagaggaggagctcccagggcattctccaagaggacaagtggggtgaaaggggagag
tcacaggtagactctgtctcccccgcccctcccccctcacggtcccccgcccccccggtg
aagcttatcccgctcaggaagcaatgggctgtagagggcgtggccgggaagcagtgttcc
gtggagggagtggccaagagggaccactgtgatgtcatctgggtgcgacgcgaagactac
gccaacggagggaacaatgacgtcttctga
DBGET
integrated database retrieval system
