Oncorhynchus tshawytscha (Chinook salmon): 112232475
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Entry
112232475 CDS
T05605
Name
(RefSeq) filamin-C-like
KO
K27393
filamin-C
Organism
otw
Oncorhynchus tshawytscha (Chinook salmon)
Pathway
otw04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
otw00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
112232475
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
otw04812
]
112232475
Cytoskeleton proteins [BR:
otw04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
112232475
Intermediate filaments
Intermediate filament-binding proteins
112232475
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Filamin
Ig_GEX2_N
CH
Big_3_5
Y_Y_Y
Big_13
Motif
Other DBs
NCBI-GeneID:
112232475
NCBI-ProteinID:
XP_024255255
LinkDB
All DBs
Position
LG06:complement(54599124..54658818)
Genome browser
AA seq
2702 aa
AA seq
DB search
MSSNNAHYYDHSHPPQYYQGTDTSEGDKEDEMPATEKDLAEDAPWKKIQQNTFTRWCNEH
LKCINKSITDLQKDVGDGLKLIGLLEVLSQKKMYRKHHNRPNFRQMKLENVSVALEFLDG
EHIKLVSIDSKAIVDGNLKLILGLIWTLILHYSISMPMWEDEDDEEAKELTPKQRLLGWI
RNKVPELPINNFHRDWRDGKALGALVDNCAPGLCPDWQAWDPNQPVENAREAMQQADDWL
GVPQVINPEEIVDPEVDEQSMMTYLSQFPKSKLRPGAPLKPKGVQLYPKKAKFYGPGIEA
NGNMVLKPAVFTVETLEAGQAEVLVYVNDPEGHTEEAKVVFNNDKNRTHTVIYIPKVEGA
HKVKVLFAGQDVDKSPYTVNVDKAIGDPNKVQARGPGLEATGNMANKPTYFYIYTAGAGN
GDVSVVIVDPEGKKDTVKLILENKGDSVFRCTYRPMLEGPHTIHILFAGQEILKSPFKVQ
ITEAINADTCRATGRGLQAKGVRVKEVADFKVFTKGAGNGELKVSVTGPCGDEEPVKVKD
IGGVYECEYLPNQTGKYTVNITWGGQPIPHSPFDVEVSEVAGPQKVRAWGPGLLTGRVGK
SADFVVEAVGTEVGTLGFSIEGPSQAKIECDDKGDGSCDVRYWPTRPDYYAVHVICDDED
IKGSPFMAHILSATNDCFPDKVKAFGPGLEPIGVIVNKPAEFTIDARGAGKGHLKIYAKD
TESVTIDIKITDKGDGTFLCVYVPIKPIKHTIIITWGDVKVPNSHFRVIVGEGCHPDKVK
VYGPGVEKTGLKANEPNFFTVDCAEAGQGDISIGIKCAPGVVGPAEADINFDIIKNDNDT
FTVKYTPPGAGKYTIMVLFAEQEIPISPFRVKVNRSHDAGNVRAEGPGLNKTGVEAGTPT
HFTIFTKGAGKAKPKVQFTAAELKGEAVRDFEIIDNHDYSYTVKYTAVHQGQMTISVTHG
GDPIPKSPFNITVAPPVDLGKVKVTGLDTKVEVGKDQEFYINTQGAGGQGEVAVKMTSPS
GRPIPYKLDSDTANGAHSVKYIPPEEGPYKVDVSYDCNPVPGSPFAVEGVMPADPSKVRA
YGPGLKGGIVGKPAPFAIDTNGAGPGGLGLTVEGSCKAKIECQDNGHSTCLPTEAGEYAI
NILFGKQHIPGSPFKAAVKPCLDPSQVTASGPGLDKAKAGEPAYFTVDCTSAGEAKLTIE
IVSESGAESEVHIQKTAEGSFSVTYIPPFHGTHTITIKYGGHVVPNFPALIQVEPAVDTG
GVQVYGPGVQPRGVIKEVTTHFIVDARKMPKTSGDHLNACIINPSGTNTDTYITNKGDGT
FRVEYTAYEDGMHVIEVLYDEVAIPKSPFRVSVVEGCDPTRVRAYGPGLEGGLINTPNCF
TVETRGAGTGGLGLTIEGASEAKITCKDNKDGSCSVEYVTFTPGEYDVNINFGGHPIPGS
PFRVPVWDPSKVKCSGQGLGDRVRAHLPQTFTVDTIQAGQANLEVSLIGPSGSEPVAVKN
NSDGTHTVNYTPVHDGPYTVSVKYGDQEVPRSPFKVRSQPGHDASKVCASGPGLDKSGVP
ASLPVEFTIDARDAGEGLLTVQILDQECKPKKATIYDNRDGTYTVSYVPDSTGPYTIMIK
YGGDEIPYSPYHILALPTGDASKCLLTVFIGGHALASGLTKMQVNEEAIISVDTKAAGKG
KVTCSVMTPEGVELDMDVQENRDGTVDIYYTAPEPGKYVITIRFGGGHIPKSPFHVTATK
EPIVLSDGMDQFRPLNLVIPFTVQQGPITGEVRMPYGKTAHPYIINDNDGTITVKFNPTE
KGLHEMDIKYEGNHIPGSPLQFYVDAMNSGLVTAHGPGLCQGSINKPVTFIVVTKNAGEG
GLSLAVEGPSKAKITCKDNKDGTCTVSYLPTSPGDYKIIVKSDNKHIAGSPFTAKITGDD
SIRTSQLNVGTAADLSLKITESDLSLLTANIRAPSGNEEPCLLKRLPSRYIGISFTPKEV
GEHEVSVKKNGKHVTNSPFKIQVGQSDIGEASRVKAFGKGLVEAHTFKMAEFFVDTRDAG
YGGLGLSIEGPSKVDINCEVVEDGTCRVSYCPTELGNHIINIKFSDKHIPGSPFTVKVTG
EGRMKESITRKRTAPAIASVGSACGLNLKIPGNWFQMVSAQERMTRTFTRSSHTYTRKER
TEISKMRGGETKREVRVEESTQAGGTGGASPFKDVFGEFLGRESLASFAGIPATVTPGET
TTKGSMMAQVTSPGGKTEQAEIIDGGDSTYSVRFVPQEMGAHTVNVKYSGQHVPGSPFQF
TVGPLGEGGSHKVRAGGTGLERGVAGAPTEFSIWTREAGAGGLSIAVEGPSKAEISFEDR
KDGSCRVVYIVQDPGDYEVSIKFNNEHIPDSPFVVPIATLSDEACRLTVTSLQEKDLKVN
QEASFAVQCNGARGVVDAKVHTPSGSAEECYITDLDSDKNAIRFIPRENGVHSIDVKFNG
SHIPGSPFNVRVGEAGQAGDPGMVTVYGPGLDGGSTGVASEFVVNTCNAGSGALSVTIDG
PSKVKMDCSDCLDGYKVIYRPMAPGNYLITIKYGGPNHIVGSPFKAKVTGTRLSGGHSLH
ETSSVLVQTITKTSKVAGAYSTSFSSKLTSDASKVVCRGGGLTKALVGQKNVFNVDCSKA
GTNMLLVGVHGPRTPCEKVYVKHMGNRLYNVTYTVKDKDNYTIFVKWGDDSVPGSPFKVA
VP
NT seq
8109 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagcaataatgcacattactatgaccacagccatccaccacagtactaccagggc
actgacacctctgaaggggacaaggaagacgagatgccggctacagagaaggaccttgcc
gaggatgcaccatggaagaaaatacaacagaatacttttaccaggtggtgcaatgagcac
ctcaagtgcatcaacaagagcatcactgacttacagaaggatgttggcgacggtttaaag
ctgatcgggctcctagaagttctgagtcagaagaagatgtacagaaagcatcacaataga
cccaacttcagacagatgaaactggaaaatgtgtcggtggcccttgaattcttggacggg
gaacacatcaagttggtgtctattgactccaaggccatcgtggatgggaacctgaagttg
atcctgggtctgatctggactctgatcttgcactactccatctccatgcccatgtgggag
gacgaggatgatgaggaggccaaggaactgaccccgaagcagaggctgcttggctggatc
cggaacaaggtgcctgagctgcccatcaacaacttccaccgtgactggagggacggcaag
gccctaggagccctggtagacaactgtgcccctggtctgtgccctgactggcaggcctgg
gaccctaatcagcctgtggagaatgccagagaggctatgcagcaggctgacgactggctg
ggcgttccccaggtgatcaaccctgaggagattgtagatccggaagtggatgaacagtcc
atgatgacttacctgtcccagttccccaagtctaaactgaggcctggcgctcccctcaaa
cctaaaggggttcagctgtaccccaaaaaagccaagttttacggaccaggtattgaggca
aatggtaacatggttctgaagccagcagtgttcacagtggaaactctagaggcaggtcag
gctgaggtgctggtgtatgtcaatgatcctgagggacacactgaggaggctaaggtggtc
ttcaacaacgacaagaacaggacccacaccgttatttacatccccaaggttgagggcgcc
cacaaggtgaaagtgctatttgctgggcaggatgttgataagagcccctacacagtgaac
gtggacaaggccataggtgatcccaacaaggtccaggccagaggaccagggctggaagct
accggcaacatggccaacaaacccacctacttttacatctacactgcaggtgctggtaac
ggtgatgtgagcgttgtcatcgtggaccctgaggggaagaaagacacggtgaaactgatc
ttggaaaacaagggggacagtgttttccgttgcacctaccggcccatgttggaaggcccc
cacaccatccatatcctgtttgccggtcaggagatccttaagagccccttcaaggttcaa
atcacagaggccatcaatgctgacacgtgtcgtgccacaggaagaggccttcaggcaaaa
ggggtgcgggtcaaggaggtggcagacttcaaggtcttcaccaagggagctggcaacgga
gagctcaaggtctcagtgactggaccatgtggagatgaggagccagtgaaagtaaaagat
attggtggtgtctatgaatgtgaatatcttcctaaccagactggtaaatacaccgtcaac
atcacctggggaggacagcctatcccacacagccccttcgatgtggaggtgagtgaggtg
gcaggccctcagaaggtgagagcctggggtcctggtctgttgaccggccgggtgggcaag
tcggctgacttcgtggtggaggccgtcggcacggaagtgggaactctgggcttctctatc
gagggtccatcccaggctaagatagagtgtgatgataaaggtgacggctcctgcgatgtc
cgctattggcccactaggccagattactatgctgtccatgtcatatgtgatgacgaagac
atcaagggcagccccttcatggcccacatcctctctgcaaccaatgactgcttccctgat
aaggtgaaagctttcggtccaggcctggagcccataggggtcatcgtaaacaaaccagca
gagttcacgatcgatgcccgcggggctggcaaaggccatctgaagatctacgccaaggat
acagagagcgtcaccatcgacattaagataactgataagggagacgggaccttcttgtgt
gtgtacgttcccatcaagcccatcaaacacaccatcatcatcacctggggagatgtcaaa
gtgcccaacagccacttcagggtgattgttggagagggctgccacccagacaaggtcaag
gtgtatggtccaggagtggagaagacaggactcaaggcaaacgagcccaacttcttcact
gtggactgcgcagaggctggacaaggagacatcagtattgggatcaagtgtgctccagga
gtggtgggtccagctgaggctgacatcaactttgacattatcaagaacgacaatgacacc
ttcactgtcaagtacaccccccccggtgcagggaaatacaccatcatggtgttgttcgct
gaacaggaaatccccattagtccatttagggtgaaggtgaatcgttcccatgatgctggc
aatgtgagggctgagggtccaggactcaacaagacaggcgtggaggcgggcactccgacc
cacttcaccatcttcacaaagggagcaggcaaggccaagccaaaggtccagttcacagca
gcagaactgaagggagaggctgtcagggactttgagatcatagacaaccatgactactcc
tacaccgttaagtacaccgctgttcatcagggtcagatgaccatctccgtcacccatgga
ggggaccccattccaaagagccccttcaatattactgtggctcctcctgtagatctggga
aaggtcaaggttacaggactggacaccaaggtggaagttggcaaggatcaagagttctac
atcaacacccagggagccggaggacagggcgaggtggctgtcaagatgacctcaccctct
ggccgaccaatcccttacaagctggattcggacacagccaatggagcccactcggtgaag
tacatccccccagaggaggggccttacaaggtggacgtcagctatgactgcaaccccgtc
cctggatcccccttcgctgtggagggagtgatgcctgctgacccatcaaaggtgcgtgca
tacggcccaggcctgaagggaggcattgtgggtaaaccagccccctttgccattgacacc
aatggagcgggccccggcgggctgggcctgactgtggaggggtcgtgcaaggctaagatc
gagtgccaggacaatggacacagtacctgcctgcctaccgaggctggagagtatgccatc
aatatcctgtttggaaagcagcacatccctgggtctcctttcaaggcagctgttaagcca
tgcctggaccccagccaggtaaccgccagtggtccaggcctagataaagccaaggcaggg
gaaccagcctactttacagtggactgcaccagtgccggagaggctaagctcaccatcgag
attgtctctgagtccggggctgagtccgaggtccacatccagaagacagccgagggatcc
ttctctgtcacctacatcccaccttttcacggcacacacaccatcaccattaagtacggg
ggtcatgtggttcccaacttccctgcgctcatccaagtggagccggctgttgataccggc
ggagtgcaggtctatggaccaggagtgcagcccagaggtgtcatcaaggaggttaccact
cacttcattgtggatgcccgcaaaatgcccaagacctctggtgaccacttgaatgcatgc
atcatcaacccttcaggcaccaacacagacacctacatcacaaacaagggagacggaacc
ttcagagtggaatacaccgcctatgaggacggtatgcatgtgattgaggtactgtatgac
gaggtggccatccctaagagccccttcagggtgtcagtagtggagggatgtgaccccacc
cgggtcagggcctacgggccagggctcgagggaggactcatcaacacacccaactgcttc
accgtcgagaccaggggtgctggtactggaggcctgggcctgaccatagagggagcgtca
gaggcaaaaattacctgtaaagataacaaagatggcagctgcagcgtagagtacgttacc
ttcacacctggagagtacgacgtcaatatcaacttcggaggacaccccattccaggcagt
ccgttccgcgtgccagtgtgggatcccagtaaggtgaaatgttcaggccaaggtttgggt
gacagagtcagagcccacctacctcagacctttactgtggacactatacaggcaggacag
gcaaatctggaggtcagtctcataggaccatcaggttcagagcctgttgctgtaaaaaat
aacagtgatggtacacacacagtcaactacactccagttcatgatggcccttacactgtg
tcagttaaatatggagaccaggaggttcctcgcagtccattcaaggtgagatctcagcct
ggtcatgatgccagtaaggtttgtgcaagcggtccaggtctggacaagtcaggtgtgccc
gccagcctgccagtggagttcaccattgatgcccgcgacgcaggagagggactgctcact
gtacaaatactggaccaagaatgcaagccaaagaaggctaccatctatgataacagagat
gggacctacacagtgtcttacgtaccagactccaccggcccttacacaatcatgatcaag
tatggaggcgatgagatcccctactctccctaccatatcttagccctgcccactggagat
gccagcaagtgtctgcttactgtgtttatcggaggacatgccctggcatcaggtctgact
aagatgcaggtgaacgaggaggccatcatctctgtggacacaaaggccgctgggaagggc
aaggtgacctgctcggtcatgaccccagagggggtggagctagacatggatgtgcaggaa
aaccgtgatggaaccgtcgacatctactacaccgctccagaaccaggaaaatatgtcatc
accatccgcttcggaggagggcacatacccaagagccccttccatgttacggcaacaaag
gagcccattgtccttagtgacggcatggatcagttccgccctctcaacctggtcatcccg
ttcactgtacagcagggaccaatcacaggtgaggtgcgtatgccctacggtaagactgcc
catccctacataataaatgacaatgatgggaccatcacagttaaattcaaccctactgaa
aagggtctgcacgagatggacatcaagtatgaaggaaatcacatcccaggaagccccctc
cagttttatgtggatgctatgaacagtggtctggtgacagcacacggccctggtctctgt
caagggtccatcaacaaacctgtcactttcattgtggtcaccaagaatgctggagaaggt
ggtctgtccctagcggtggagggtccttctaaggcaaagatcacctgtaaagacaataag
gatggaacctgtactgtatcctacctgcccacctcaccaggagactacaagatcattgtc
aagtctgacaacaaacacattgccggcagccccttcactgctaaaatcactggtgatgac
tctatcaggacatcccagctcaacgtggggacagcagcagacttgtcactgaagatcaca
gagtctgacctgagtctgctgacggctaatatcagagctccatcaggcaacgaagagccg
tgtttgctcaagagactgcccagcagatacataggtatctccttcactcctaaggaggtg
ggagagcacgaggtgagcgtgaagaagaacggtaagcacgtgaccaacagccctttcaag
atccaggttggccagtcagatattggcgaggccagtagggtcaaggcctttggtaaagga
ctggtggaggcacacaccttcaaaatggctgagttctttgtggacactagggatgcaggt
tatggtggtctggggttgtcgatcgagggtccgagtaaagtggatattaactgtgaggtt
gtggaggatgggacgtgcagagtcagttactgccccacagagctaggcaaccacatcatc
aacatcaagttttctgacaagcacatcccaggaagtcctttcacagtgaaggtgacagga
gaaggaaggatgaaggagagcatcaccaggaagagaactgcccccgccatcgcttctgtc
ggcagcgcctgtggactcaacctcaaaatccctggaaactggttccagatggtgtcagcc
caggagaggatgacgcgcacattcacacgcagtagccacacgtacacacgcaaggagcgc
acggagatcagcaagatgcggggcggcgagacgaagagggaggtgagggtcgaagagagc
acccaggcgggaggaacaggaggagccagtccattcaaagatgtttttggagagttcctg
ggcagagagagtctggctagcttcgctgggatacccgctacagtcacaccaggtgaaacc
actaccaagggtagtatgatggcccaggttaccagccctgggggtaaaacagaacaggca
gagatcatagatggaggggacagcacctacagtgtccgcttcgtgccccaggagatgggg
gcccacacggtcaatgtgaagtacagcgggcagcacgtcccaggtagtcccttccagttt
acagtgggaccactgggagaaggagggtcccacaaggttcgggccggaggcactgggctg
gagagaggagtggcaggagcaccaactgaatttagtatctggacgcgggaggccggtgca
ggcggtctgtccatcgctgtagaggggcccagtaaggctgagatctcctttgaagacagg
aaggatggatcctgtagggtggtctacattgtacaggatccaggtgactatgaagtgtca
atcaagttcaacaacgagcacatccccgacagcccctttgttgttcccatagcaacgctg
tctgatgaggcatgccgactcactgtcaccagcctgcaggagaaggacctaaaggtgaac
caggaagcgtcgttcgctgtacagtgtaacggggcaaggggcgtggttgatgctaaggtc
cataccccctccggctcagcagaggagtgctacatcacagacctggacagtgacaagaac
gccatccgcttcattccccgtgagaatggcgtgcactccatcgacgtcaagttcaatggc
agccacatccctggaagtccgttcaatgtgagggtgggggaggccggacaggctggagac
ccaggcatggtgacagtttatgggcctggactggatggagggtccacaggtgtagcctca
gagtttgtagtgaacacctgtaacgcggggtcgggtgccctgtccgtgaccatcgacggt
ccctctaaggtgaagatggactgttccgattgccttgatggctacaaggtcatctacaga
cccatggcccctggcaactatctcatcaccatcaaatatggaggacccaaccatatagtg
ggcagcccattcaaagccaaagtcacaggtacccgtctgtctggtggtcacagccttcac
gagacgtcctcggtcctggtacagacgattactaagacgtccaaggtagcaggagcgtac
agtacctcgttttcctcaaaactgacctctgacgccagcaaggtggtgtgtcgaggcggc
gggctcaccaaggctctggtcggacagaagaatgtattcaatgtggactgcagcaaagca
ggtactaacatgttactggtgggagtgcacggtcccaggacgccctgtgaaaaggtgtac
gttaaacacatgggcaaccgcctgtacaacgtcacctacactgtcaaagacaaggacaac
tacaccattttcgtcaagtggggggatgacagtgttcctggcagcccctttaaagtagct
gtgccctga
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integrated database retrieval system
